Wall clock time and date at job start Tue Mar 31 2020 13:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35243 * 126.06559 * 2 1 4 4 C 1.40408 * 107.86535 * 179.97438 * 3 2 1 5 5 N 1.40186 * 125.97603 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99963 * 359.97438 * 5 4 3 7 7 O 1.21598 * 119.99729 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00129 * 179.97438 * 6 5 4 9 9 C 1.48151 * 127.83824 * 180.02562 * 8 6 5 10 10 C 1.54393 * 104.71948 * 219.52711 * 9 8 6 11 11 H 1.09000 * 117.61478 * 115.27730 * 10 9 8 12 12 C 1.52876 * 118.19652 * 273.00000 * 10 9 8 13 13 H 1.08998 * 117.39301 * 343.66704 * 12 10 9 14 14 C 1.53003 * 117.42883 * 199.07136 * 12 10 9 15 15 O 1.42902 * 109.47099 * 115.63862 * 14 12 10 16 16 C 1.52997 * 60.66526 * 91.37723 * 12 10 9 17 17 H 1.08996 * 120.26620 * 111.50126 * 16 12 10 18 18 C 1.48148 * 127.83991 * 0.02562 * 8 6 5 19 19 N 1.31212 * 108.05296 * 0.26575 * 4 3 2 20 20 N 1.34953 * 126.07001 * 179.97438 * 2 1 3 21 21 C 1.46503 * 125.98127 * 0.02562 * 20 2 1 22 22 C 1.50698 * 109.47078 * 89.99712 * 21 20 2 23 23 H 1.08001 * 119.99981 * 359.97438 * 22 21 20 24 24 C 1.37878 * 119.99820 * 180.02562 * 22 21 20 25 25 N 1.31509 * 120.00088 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00063 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47199 * 59.99390 * 26 24 22 28 28 H 1.48497 * 109.47229 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46804 * 299.99838 * 26 24 22 30 30 H 1.09004 * 109.47453 * 90.02463 * 1 2 3 31 31 H 1.08997 * 109.47301 * 210.02465 * 1 2 3 32 32 H 1.09009 * 109.47382 * 330.02651 * 1 2 3 33 33 H 1.07999 * 126.07435 * 359.97438 * 3 2 1 34 34 H 0.96996 * 120.00615 * 180.02562 * 5 4 3 35 35 H 1.09002 * 110.40666 * 338.37043 * 9 8 6 36 36 H 1.09002 * 110.40751 * 100.68485 * 9 8 6 37 37 H 1.08998 * 109.46792 * 235.63857 * 14 12 10 38 38 H 1.08996 * 109.46953 * 355.63618 * 14 12 10 39 39 H 0.96702 * 113.99458 * 180.02562 * 15 14 12 40 40 H 1.08996 * 110.41208 * 259.20110 * 18 8 6 41 41 H 1.09004 * 110.40532 * 21.63139 * 18 8 6 42 42 H 1.09002 * 109.47457 * 209.99966 * 21 20 2 43 43 H 1.08999 * 109.46997 * 329.99804 * 21 20 2 44 44 H 0.97005 * 120.00066 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6547 0.0006 5 7 4.7737 1.4752 0.0003 6 6 4.6369 2.8160 -0.0012 7 8 3.5276 3.3140 -0.0018 8 7 5.7296 3.6049 -0.0010 9 6 5.7817 5.0855 -0.0019 10 6 6.9472 5.4364 -0.9517 11 1 6.7067 5.9719 -1.8702 12 6 8.3590 5.5026 -0.3690 13 1 8.4515 5.5706 0.7149 14 6 9.4167 6.2653 -1.1693 15 8 9.8524 7.4020 -0.4209 16 6 7.8497 4.1828 -0.9519 17 1 8.2816 3.7848 -1.8700 18 6 7.1513 3.1882 0.0002 19 7 3.6337 -0.6574 -0.0048 20 7 2.3016 -1.0908 0.0005 21 6 1.8501 -2.4846 0.0006 22 6 1.6958 -2.9627 -1.4202 23 1 1.9119 -2.2950 -2.2411 24 6 1.2776 -4.2521 -1.6720 25 7 1.0139 -5.0650 -0.6724 26 14 1.0869 -4.8451 -3.4331 27 1 2.3936 -4.7486 -4.1322 28 1 0.6292 -6.2578 -3.4330 29 1 0.0869 -4.0003 -4.1343 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3634 0.8903 0.5135 33 1 1.9720 2.1212 -0.0004 34 1 5.6586 1.0780 0.0004 35 1 4.8462 5.4984 -0.3793 36 1 5.9836 5.4593 1.0019 37 1 10.2665 5.6111 -1.3642 38 1 8.9881 6.5957 -2.1154 39 1 10.5246 7.9336 -0.8688 40 1 7.5693 3.2656 1.0039 41 1 7.2492 2.1697 -0.3756 42 1 2.5846 -3.1044 0.5148 43 1 0.8913 -2.5558 0.5141 44 1 0.7201 -5.9723 -0.8496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365172298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:10 Heat of formation + Delta-G solvation = 46.043008 kcal Electronic energy + Delta-G solvation = -26063.972638 eV Core-core repulsion = 22212.771760 eV Total energy + Delta-G solvation = -3851.200878 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01383 -40.35336 -38.86150 -37.03041 -34.79795 -34.04752 -33.26802 -31.38251 -30.78052 -28.85764 -28.26696 -26.58865 -26.29063 -24.76517 -22.93538 -21.33372 -20.99333 -20.59206 -19.67548 -19.23626 -17.82818 -17.70676 -16.66996 -16.26750 -15.93250 -15.81840 -15.41634 -15.17195 -14.70888 -14.44870 -14.13408 -13.99552 -13.87025 -13.40817 -13.02279 -12.91931 -12.52453 -12.44512 -12.24935 -12.14977 -11.93884 -11.67390 -11.58173 -11.37141 -11.10181 -10.93611 -10.80430 -10.55388 -10.44940 -10.22596 -10.14564 -9.95689 -9.63591 -9.53009 -8.97314 -8.62547 -7.89287 -7.38351 -6.23767 -4.31297 2.22748 2.64613 2.91925 3.08161 3.24096 3.27768 3.31394 3.42750 3.53972 3.85058 4.06439 4.12117 4.30789 4.34451 4.55423 4.65468 4.70117 4.82469 4.92368 5.04641 5.09138 5.09734 5.22766 5.39980 5.52519 5.54430 5.65087 5.73157 5.77480 5.81611 5.96047 6.14615 6.27848 6.48495 6.63028 6.70628 6.93330 7.06374 7.11592 7.15184 7.53735 7.68747 7.90106 7.91954 8.09269 8.57491 8.69195 8.77470 9.34709 10.83328 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.002281 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.403694 B =12270.727902 C =12913.284213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.092 3.908 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.641 5.641 6 C 0.738 3.262 7 O -0.562 6.562 8 N -0.640 5.640 9 C 0.153 3.847 10 C -0.168 4.168 11 H 0.124 0.876 12 C -0.108 4.108 13 H 0.115 0.885 14 C 0.107 3.893 15 O -0.571 6.571 16 C -0.167 4.167 17 H 0.125 0.875 18 C 0.127 3.873 19 N -0.324 5.324 20 N -0.318 5.318 21 C 0.259 3.741 22 C -0.535 4.535 23 H 0.063 0.937 24 C 0.065 3.935 25 N -0.892 5.892 26 Si 0.906 3.094 27 H -0.275 1.275 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.405 0.595 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.382 0.618 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.946 21.235 0.355 25.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.029 3.971 5 N -0.291 5.291 6 C 0.440 3.560 7 O -0.437 6.437 8 N -0.380 5.380 9 C 0.030 3.970 10 C -0.187 4.187 11 H 0.142 0.858 12 C -0.127 4.127 13 H 0.133 0.867 14 C 0.029 3.971 15 O -0.377 6.377 16 C -0.187 4.187 17 H 0.143 0.857 18 C 0.004 3.996 19 N -0.154 5.154 20 N -0.100 5.100 21 C 0.141 3.859 22 C -0.574 4.574 23 H 0.082 0.918 24 C -0.138 4.138 25 N -0.530 5.530 26 Si 0.733 3.267 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.177 0.823 34 H 0.240 0.760 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.230 0.770 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.170 19.894 0.844 24.439 hybrid contribution 0.505 0.102 -1.535 1.619 sum 14.675 19.996 -0.691 24.813 Atomic orbital electron populations 1.20330 0.87895 1.02799 1.03147 1.21049 0.94890 0.87142 1.00911 1.21231 0.89678 0.99818 1.21325 1.18648 0.86480 0.89255 1.02719 1.41372 1.07644 1.03514 1.76609 1.14974 0.83062 0.80140 0.77851 1.90884 1.22597 1.73362 1.56829 1.48265 1.04294 1.06783 1.78628 1.21578 0.98235 0.78580 0.98614 1.23929 0.90345 1.02131 1.02286 0.85841 1.22256 0.93128 0.96547 1.00772 0.86660 1.21604 0.95571 0.87076 0.92851 1.86474 1.62234 1.40927 1.48063 1.23721 1.03613 0.89193 1.02158 0.85731 1.21817 0.80737 0.98004 0.99089 1.77250 0.99974 1.08239 1.29971 1.48961 1.00863 1.07733 1.52478 1.19673 0.95956 0.71357 0.98874 1.21287 1.46768 0.97926 0.91404 0.91833 1.24926 0.94712 0.96084 0.98087 1.69909 1.44917 1.07125 1.31048 0.86414 0.78780 0.77658 0.83813 1.20031 1.20972 1.19938 0.90450 0.90877 0.90822 0.82265 0.75986 0.88953 0.90732 0.92696 0.93135 0.77042 0.90338 0.89803 0.93039 0.92784 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.11 36.01 0.36 -1.10 16 2 C 0.09 1.98 6.92 -82.29 -0.57 1.41 16 3 C -0.29 -6.19 9.52 -39.83 -0.38 -6.57 16 4 C 0.28 5.97 8.11 -154.37 -1.25 4.72 16 5 N -0.64 -10.70 5.43 -15.51 -0.08 -10.78 16 6 C 0.74 11.88 8.54 -86.92 -0.74 11.13 16 7 O -0.56 -10.88 13.74 5.28 0.07 -10.80 16 8 N -0.64 -7.46 3.32 -175.01 -0.58 -8.04 16 9 C 0.15 1.46 6.85 -2.40 -0.02 1.45 16 10 C -0.17 -1.24 6.74 -89.18 -0.60 -1.84 16 11 H 0.12 0.84 8.13 -51.93 -0.42 0.41 16 12 C -0.11 -0.70 5.59 -90.68 -0.51 -1.20 16 13 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 14 C 0.11 0.55 7.32 37.16 0.27 0.83 16 15 O -0.57 -3.53 13.66 -35.23 -0.48 -4.01 16 16 C -0.17 -1.13 6.86 -89.12 -0.61 -1.74 16 17 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 18 C 0.13 1.03 6.72 -2.41 -0.02 1.01 16 19 N -0.32 -7.64 12.59 31.44 0.40 -7.25 16 20 N -0.32 -7.69 3.59 -58.33 -0.21 -7.90 16 21 C 0.26 6.72 5.99 -5.19 -0.03 6.69 16 22 C -0.54 -14.88 9.39 -34.44 -0.32 -15.21 16 23 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 26 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 32 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.16 3.36 5.91 -52.49 -0.31 3.05 16 34 H 0.40 5.55 7.22 -40.82 -0.29 5.26 16 35 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.05 0.22 7.95 -51.93 -0.41 -0.19 16 39 H 0.38 0.62 9.12 45.56 0.42 1.03 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.62 6.87 -51.93 -0.36 0.27 16 42 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 1.38 7.04 -51.93 -0.37 1.02 16 44 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -34.76 369.03 -9.57 -44.34 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.45 Total: 5.85 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -4.51 Total: 1.27 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.26 Total: -58.42 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.41 Total: -14.82 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.76 -9.57 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365172298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.378 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds