Wall clock time and date at job start Tue Mar 31 2020 13:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35243 * 126.06559 * 2 1 4 4 C 1.40408 * 107.86535 * 179.97438 * 3 2 1 5 5 N 1.40186 * 125.97603 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99963 * 359.97438 * 5 4 3 7 7 O 1.21598 * 119.99729 * 0.02562 * 6 5 4 8 8 N 1.34769 * 120.00129 * 179.97438 * 6 5 4 9 9 C 1.48151 * 127.83824 * 180.02562 * 8 6 5 10 10 C 1.54393 * 104.71948 * 219.52711 * 9 8 6 11 11 H 1.09000 * 117.61478 * 115.27730 * 10 9 8 12 12 C 1.52876 * 118.19652 * 273.00000 * 10 9 8 13 13 H 1.08998 * 117.39301 * 343.66704 * 12 10 9 14 14 C 1.53003 * 117.42883 * 199.07136 * 12 10 9 15 15 O 1.42902 * 109.47099 * 115.63862 * 14 12 10 16 16 C 1.52997 * 60.66526 * 91.37723 * 12 10 9 17 17 H 1.08996 * 120.26620 * 111.50126 * 16 12 10 18 18 C 1.48148 * 127.83991 * 0.02562 * 8 6 5 19 19 N 1.31212 * 108.05296 * 0.26575 * 4 3 2 20 20 N 1.34953 * 126.07001 * 179.97438 * 2 1 3 21 21 C 1.46503 * 125.98127 * 0.02562 * 20 2 1 22 22 C 1.50698 * 109.47078 * 89.99712 * 21 20 2 23 23 H 1.08001 * 119.99981 * 359.97438 * 22 21 20 24 24 C 1.37878 * 119.99820 * 180.02562 * 22 21 20 25 25 N 1.31509 * 120.00088 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00063 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47199 * 59.99390 * 26 24 22 28 28 H 1.48497 * 109.47229 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46804 * 299.99838 * 26 24 22 30 30 H 1.09004 * 109.47453 * 90.02463 * 1 2 3 31 31 H 1.08997 * 109.47301 * 210.02465 * 1 2 3 32 32 H 1.09009 * 109.47382 * 330.02651 * 1 2 3 33 33 H 1.07999 * 126.07435 * 359.97438 * 3 2 1 34 34 H 0.96996 * 120.00615 * 180.02562 * 5 4 3 35 35 H 1.09002 * 110.40666 * 338.37043 * 9 8 6 36 36 H 1.09002 * 110.40751 * 100.68485 * 9 8 6 37 37 H 1.08998 * 109.46792 * 235.63857 * 14 12 10 38 38 H 1.08996 * 109.46953 * 355.63618 * 14 12 10 39 39 H 0.96702 * 113.99458 * 180.02562 * 15 14 12 40 40 H 1.08996 * 110.41208 * 259.20110 * 18 8 6 41 41 H 1.09004 * 110.40532 * 21.63139 * 18 8 6 42 42 H 1.09002 * 109.47457 * 209.99966 * 21 20 2 43 43 H 1.08999 * 109.46997 * 329.99804 * 21 20 2 44 44 H 0.97005 * 120.00066 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6547 0.0006 5 7 4.7737 1.4752 0.0003 6 6 4.6369 2.8160 -0.0012 7 8 3.5276 3.3140 -0.0018 8 7 5.7296 3.6049 -0.0010 9 6 5.7817 5.0855 -0.0019 10 6 6.9472 5.4364 -0.9517 11 1 6.7067 5.9719 -1.8702 12 6 8.3590 5.5026 -0.3690 13 1 8.4515 5.5706 0.7149 14 6 9.4167 6.2653 -1.1693 15 8 9.8524 7.4020 -0.4209 16 6 7.8497 4.1828 -0.9519 17 1 8.2816 3.7848 -1.8700 18 6 7.1513 3.1882 0.0002 19 7 3.6337 -0.6574 -0.0048 20 7 2.3016 -1.0908 0.0005 21 6 1.8501 -2.4846 0.0006 22 6 1.6958 -2.9627 -1.4202 23 1 1.9119 -2.2950 -2.2411 24 6 1.2776 -4.2521 -1.6720 25 7 1.0139 -5.0650 -0.6724 26 14 1.0869 -4.8451 -3.4331 27 1 2.3936 -4.7486 -4.1322 28 1 0.6292 -6.2578 -3.4330 29 1 0.0869 -4.0003 -4.1343 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3634 -0.8897 0.5142 32 1 -0.3634 0.8903 0.5135 33 1 1.9720 2.1212 -0.0004 34 1 5.6586 1.0780 0.0004 35 1 4.8462 5.4984 -0.3793 36 1 5.9836 5.4593 1.0019 37 1 10.2665 5.6111 -1.3642 38 1 8.9881 6.5957 -2.1154 39 1 10.5246 7.9336 -0.8688 40 1 7.5693 3.2656 1.0039 41 1 7.2492 2.1697 -0.3756 42 1 2.5846 -3.1044 0.5148 43 1 0.8913 -2.5558 0.5141 44 1 0.7201 -5.9723 -0.8496 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365172298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:09 Heat of formation + Delta-G solvation = 21.852717 kcal Electronic energy + Delta-G solvation = -26065.021608 eV Core-core repulsion = 22212.771760 eV Total energy + Delta-G solvation = -3852.249848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.38001 -41.53250 -39.94807 -37.51331 -36.35500 -35.38201 -34.76268 -32.96369 -32.59822 -29.61697 -29.11897 -28.29212 -27.86790 -25.71630 -24.74321 -22.56638 -21.62356 -21.44922 -21.08504 -20.60592 -18.96416 -18.74224 -18.23781 -17.72840 -17.15603 -16.97716 -16.59038 -16.24588 -15.99342 -15.72307 -15.58166 -14.95770 -14.86540 -14.64472 -14.31006 -13.95112 -13.83811 -13.72096 -13.57943 -13.49880 -13.29241 -13.13746 -12.86516 -12.65766 -12.54574 -12.25043 -12.14121 -12.08461 -11.62894 -11.41196 -11.38337 -11.31596 -10.89064 -10.72776 -10.58752 -9.98514 -9.57541 -9.09044 -8.31966 -6.49688 0.95212 1.02069 1.38335 1.39968 1.48858 1.61010 1.94911 2.30775 2.34807 2.38594 2.82966 2.97479 3.08089 3.49624 3.69962 3.85019 4.02097 4.11864 4.16082 4.16782 4.35136 4.39514 4.43140 4.52815 4.59838 4.68121 4.71304 4.71973 4.78523 4.89440 4.93725 4.96436 4.98355 5.02987 5.10688 5.15026 5.25855 5.34081 5.54040 5.80507 5.82306 5.93718 6.26352 6.58128 6.63769 6.94858 7.05178 7.20914 7.31480 8.73609 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023281 B = 0.002281 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.403694 B =12270.727902 C =12913.284213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.089 3.911 3 C -0.299 4.299 4 C 0.292 3.708 5 N -0.634 5.634 6 C 0.734 3.266 7 O -0.599 6.599 8 N -0.635 5.635 9 C 0.147 3.853 10 C -0.173 4.173 11 H 0.132 0.868 12 C -0.098 4.098 13 H 0.109 0.891 14 C 0.106 3.894 15 O -0.594 6.594 16 C -0.159 4.159 17 H 0.141 0.859 18 C 0.118 3.882 19 N -0.358 5.358 20 N -0.342 5.342 21 C 0.275 3.725 22 C -0.553 4.553 23 H 0.049 0.951 24 C 0.023 3.977 25 N -0.917 5.917 26 Si 0.971 3.029 27 H -0.275 1.275 28 H -0.273 1.273 29 H -0.266 1.266 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.164 0.836 34 H 0.418 0.582 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.400 0.600 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.025 0.975 43 H 0.053 0.947 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.139 22.355 -0.762 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 C -0.330 4.330 4 C 0.037 3.963 5 N -0.286 5.286 6 C 0.436 3.564 7 O -0.477 6.477 8 N -0.373 5.373 9 C 0.025 3.975 10 C -0.192 4.192 11 H 0.149 0.851 12 C -0.117 4.117 13 H 0.127 0.873 14 C 0.029 3.971 15 O -0.403 6.403 16 C -0.178 4.178 17 H 0.158 0.842 18 C -0.003 4.003 19 N -0.189 5.189 20 N -0.124 5.124 21 C 0.156 3.844 22 C -0.591 4.591 23 H 0.067 0.933 24 C -0.179 4.179 25 N -0.555 5.555 26 Si 0.795 3.205 27 H -0.201 1.201 28 H -0.197 1.197 29 H -0.191 1.191 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.182 0.818 34 H 0.256 0.744 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.438 21.064 -0.270 26.117 hybrid contribution 0.239 -0.096 -1.125 1.154 sum 15.677 20.969 -1.395 26.218 Atomic orbital electron populations 1.20470 0.85263 1.04240 1.03967 1.21723 0.96667 0.86376 0.99372 1.21387 0.89969 0.99869 1.21795 1.18918 0.87907 0.88928 1.00539 1.41347 1.07110 1.03584 1.76520 1.15125 0.83704 0.79894 0.77713 1.90842 1.24507 1.73862 1.58524 1.48334 1.04713 1.07419 1.76785 1.21744 0.98714 0.77197 0.99850 1.23872 0.90007 1.03055 1.02243 0.85068 1.22277 0.92572 0.96150 1.00678 0.87254 1.21652 0.95703 0.87096 0.92672 1.86418 1.63195 1.41539 1.49165 1.23735 1.03123 0.88630 1.02302 0.84176 1.22108 0.78637 0.98967 1.00626 1.77171 1.00126 1.09521 1.32091 1.48775 1.01591 1.07503 1.54560 1.19260 0.94972 0.72326 0.97816 1.21400 1.47607 0.98373 0.91753 0.93275 1.25732 0.93962 0.95927 1.02237 1.69994 1.44996 1.07540 1.33016 0.85414 0.78724 0.77671 0.78721 1.20088 1.19720 1.19052 0.89786 0.91135 0.87638 0.81831 0.74394 0.90434 0.89715 0.91176 0.92157 0.74914 0.88800 0.88982 0.95689 0.92909 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.81 10.11 71.24 0.72 -2.08 16 2 C 0.09 3.88 6.92 41.39 0.29 4.17 16 3 C -0.30 -12.88 9.52 22.11 0.21 -12.67 16 4 C 0.29 12.46 8.11 133.32 1.08 13.54 16 5 N -0.63 -20.98 5.43 -321.22 -1.74 -22.73 16 6 C 0.73 23.38 8.54 179.06 1.53 24.91 16 7 O -0.60 -23.34 13.74 -4.03 -0.06 -23.40 16 8 N -0.63 -14.12 3.32 -825.86 -2.74 -16.86 16 9 C 0.15 2.67 6.85 86.54 0.59 3.27 16 10 C -0.17 -2.22 6.74 -9.86 -0.07 -2.29 16 11 H 0.13 1.51 8.13 -2.39 -0.02 1.49 16 12 C -0.10 -1.02 5.59 -10.83 -0.06 -1.08 16 13 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 14 C 0.11 0.81 7.32 71.98 0.53 1.33 16 15 O -0.59 -6.01 13.66 -148.98 -2.04 -8.05 16 16 C -0.16 -1.72 6.86 -9.82 -0.07 -1.79 16 17 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 18 C 0.12 1.68 6.72 86.53 0.58 2.26 16 19 N -0.36 -17.30 12.59 -54.44 -0.69 -17.99 16 20 N -0.34 -16.94 3.59 -338.45 -1.22 -18.15 16 21 C 0.28 14.74 5.99 85.63 0.51 15.25 16 22 C -0.55 -31.30 9.39 25.60 0.24 -31.06 16 23 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 24 C 0.02 1.24 5.46 84.66 0.46 1.70 16 25 N -0.92 -52.04 13.29 21.45 0.28 -51.76 16 26 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 27 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 29 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 30 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 31 H 0.07 2.46 7.07 -2.39 -0.02 2.44 16 32 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 33 H 0.16 6.93 5.91 -2.91 -0.02 6.91 16 34 H 0.42 11.20 7.22 -92.71 -0.67 10.53 16 35 H 0.08 1.65 7.88 -2.39 -0.02 1.63 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.06 0.35 7.95 -2.39 -0.02 0.33 16 39 H 0.40 0.41 9.12 -74.06 -0.68 -0.26 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.17 6.87 -2.39 -0.02 1.16 16 42 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 2.79 7.04 -2.39 -0.02 2.78 16 44 H 0.27 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -75.53 369.03 0.09 -75.44 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.30 Total: 22.74 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.55 Total: 15.46 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.10 Total: -127.48 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -2.09 Total: -31.45 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -75.53 0.09 -75.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365172298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.290 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds