Wall clock time and date at job start Tue Mar 31 2020 12:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34967 * 125.97332 * 124.71504 * 10 9 7 12 12 C 1.35242 * 107.85567 * 179.83872 * 11 10 9 13 13 C 1.40403 * 107.86647 * 0.42003 * 12 11 10 14 14 N 1.40194 * 125.97125 * 179.71928 * 13 12 11 15 15 C 1.34779 * 120.00239 * 0.02562 * 14 13 12 16 16 O 1.21586 * 119.99925 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00003 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99688 * 179.97438 * 17 15 14 19 19 H 1.08997 * 115.55667 * 9.32134 * 18 17 15 20 20 C 1.53065 * 117.50650 * 223.60596 * 18 17 15 21 21 C 1.52703 * 59.93552 * 252.53948 * 20 18 17 22 22 C 1.53241 * 117.88129 * 107.77065 * 21 20 18 23 23 C 1.53324 * 108.49311 * 196.25210 * 22 21 20 24 24 O 1.42881 * 109.32019 * 306.04260 * 23 22 21 25 25 C 1.42863 * 114.52841 * 64.35739 * 24 23 22 26 26 C 1.53245 * 117.88166 * 252.22995 * 21 20 18 27 27 N 1.31207 * 108.05446 * 359.73921 * 13 12 11 28 28 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 30 30 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 31 31 H 1.08001 * 126.07314 * 359.97438 * 11 10 9 32 32 H 1.07999 * 126.06831 * 180.13010 * 12 11 10 33 33 H 0.97002 * 120.00200 * 180.02562 * 14 13 12 34 34 H 0.96995 * 120.00034 * 359.97438 * 17 15 14 35 35 H 1.08998 * 117.50872 * 0.02562 * 20 18 17 36 36 H 1.09003 * 117.50712 * 145.06911 * 20 18 17 37 37 H 1.08998 * 109.63868 * 315.95553 * 22 21 20 38 38 H 1.09002 * 109.63242 * 76.54997 * 22 21 20 39 39 H 1.08999 * 109.50067 * 186.08921 * 23 22 21 40 40 H 1.09000 * 109.52020 * 66.01084 * 23 22 21 41 41 H 1.09003 * 109.49519 * 175.68259 * 25 24 23 42 42 H 1.09005 * 109.51944 * 55.60663 * 25 24 23 43 43 H 1.09004 * 109.63330 * 283.45173 * 26 21 20 44 44 H 1.09003 * 109.63572 * 44.04735 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2455 -4.6195 0.8984 12 6 3.2605 -5.4427 0.5506 13 6 3.8690 -4.9145 -0.5992 14 7 4.9655 -5.4650 -1.2774 15 6 5.5299 -6.6052 -0.8325 16 8 5.0884 -7.1561 0.1574 17 7 6.5844 -7.1341 -1.4842 18 6 7.1982 -8.3731 -1.0002 19 1 6.6543 -8.8897 -0.2094 20 6 8.7271 -8.4380 -0.9653 21 6 7.9515 -9.2305 -2.0152 22 6 8.0042 -8.7405 -3.4662 23 6 6.8659 -9.4084 -4.2467 24 8 6.9506 -10.8256 -4.0859 25 6 6.7522 -11.2836 -2.7473 26 6 7.8821 -10.7531 -1.8569 27 7 3.2322 -3.8154 -0.9278 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5567 0.8904 30 1 0.6247 -2.5570 -0.8895 31 1 1.5847 -4.7464 1.7431 32 1 3.5543 -6.3438 1.0684 33 1 5.3181 -5.0253 -2.0669 34 1 6.9369 -6.6944 -2.2736 35 1 9.2761 -7.5587 -1.3021 36 1 9.1889 -8.9976 -0.1518 37 1 7.8799 -7.6579 -3.4921 38 1 8.9617 -9.0127 -3.9102 39 1 6.9526 -9.1564 -5.3036 40 1 5.9074 -9.0558 -3.8660 41 1 6.7574 -12.3735 -2.7312 42 1 5.7945 -10.9188 -2.3758 43 1 8.8293 -11.1968 -2.1638 44 1 7.6769 -11.0042 -0.8163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413535369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:40 Heat of formation + Delta-G solvation = 32.812096 kcal Electronic energy + Delta-G solvation = -26295.393872 eV Core-core repulsion = 22443.619258 eV Total energy + Delta-G solvation = -3851.774614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97610 -40.39681 -39.32579 -37.27560 -34.82769 -33.86126 -33.30414 -31.64768 -30.83429 -29.99974 -29.36703 -26.28285 -24.24013 -23.84699 -23.20229 -22.64963 -21.49937 -20.60401 -20.06796 -19.28727 -18.15524 -17.18954 -17.02465 -16.45643 -16.33531 -15.98975 -15.54094 -15.28370 -14.91425 -14.71137 -14.28685 -14.07718 -13.80824 -13.77279 -13.43767 -13.20025 -12.92872 -12.48615 -12.42607 -12.32141 -11.87955 -11.79495 -11.78910 -11.16959 -11.12892 -10.94046 -10.80464 -10.74320 -10.48479 -10.19563 -10.18608 -9.78513 -9.65347 -9.07457 -8.94146 -8.58684 -8.20489 -7.50049 -6.58895 -4.32889 2.19065 2.52564 2.93701 3.36446 3.37036 3.39204 3.41748 3.50341 3.56763 3.76425 4.12219 4.17728 4.27252 4.38737 4.40011 4.41825 4.58631 4.81382 5.05541 5.07719 5.14515 5.14944 5.23067 5.28602 5.32487 5.39803 5.48235 5.56653 5.60332 5.69861 5.73397 5.74468 6.09136 6.21953 6.41531 6.44354 6.63322 6.75162 6.83731 6.91458 7.38397 7.61108 7.82818 7.84446 8.34152 8.47127 8.54417 8.62019 9.35333 10.78698 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.002247 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.981101 B =12459.493650 C =12640.567231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.607 4.607 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.319 5.319 11 C 0.051 3.949 12 C -0.283 4.283 13 C 0.277 3.723 14 N -0.642 5.642 15 C 0.717 3.283 16 O -0.564 6.564 17 N -0.715 5.715 18 C 0.117 3.883 19 H 0.141 0.859 20 C -0.182 4.182 21 C -0.139 4.139 22 C -0.116 4.116 23 C 0.063 3.937 24 O -0.383 6.383 25 C 0.061 3.939 26 C -0.114 4.114 27 N -0.304 5.304 28 H 0.267 0.733 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.407 0.593 34 H 0.397 0.603 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.078 0.922 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.749 -20.749 -5.248 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.907 3.093 4 H -0.211 1.211 5 H -0.207 1.207 6 H -0.213 1.213 7 C -0.645 4.645 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.100 5.100 11 C -0.099 4.099 12 C -0.315 4.315 13 C 0.022 3.978 14 N -0.292 5.292 15 C 0.417 3.583 16 O -0.439 6.439 17 N -0.370 5.370 18 C 0.010 3.990 19 H 0.159 0.841 20 C -0.220 4.220 21 C -0.141 4.141 22 C -0.154 4.154 23 C -0.014 4.014 24 O -0.302 6.302 25 C -0.015 4.015 26 C -0.152 4.152 27 N -0.135 5.135 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.242 0.758 34 H 0.232 0.768 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.979 -18.648 -5.299 25.122 hybrid contribution 0.635 -1.558 0.027 1.682 sum 16.614 -20.205 -5.272 26.685 Atomic orbital electron populations 1.70821 1.06779 1.30465 1.46037 1.25925 0.96326 1.02817 0.93166 0.83379 0.74584 0.74326 0.77032 1.21139 1.20742 1.21338 1.22130 0.95397 0.90429 1.56590 0.91821 1.19757 0.86305 0.82834 0.97982 1.48766 1.23274 1.19650 1.18337 1.22561 1.00497 0.90187 0.96667 1.21517 1.01987 1.06345 1.01613 1.18766 0.90647 0.93986 0.94359 1.41343 1.31438 1.24978 1.31444 1.15531 0.79816 0.80118 0.82837 1.90863 1.64347 1.62244 1.26486 1.44437 1.33412 1.26833 1.32285 1.21571 0.91635 0.86373 0.99397 0.84114 1.23609 0.95029 1.02312 1.01090 1.21994 1.05500 0.94194 0.92400 1.21734 1.00631 0.99968 0.93018 1.22590 0.97256 0.81099 1.00435 1.87866 1.92864 1.21789 1.27656 1.22616 0.97113 0.99440 0.82368 1.21793 1.00444 0.92144 1.00840 1.77337 1.03616 1.16183 1.16362 0.92233 0.93599 0.94805 0.81504 0.82034 0.75845 0.76782 0.88274 0.87704 0.91108 0.90258 0.88736 0.92848 0.88728 0.92814 0.90332 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.36 13.65 55.43 0.76 -25.60 16 2 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 3 Si 1.08 24.97 29.90 -169.99 -5.08 19.88 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.61 -17.09 9.24 -34.44 -0.32 -17.41 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.32 5.57 -5.19 -0.03 6.29 16 10 N -0.32 -7.47 3.67 -62.56 -0.23 -7.70 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.28 -5.65 9.61 -39.83 -0.38 -6.03 16 13 C 0.28 5.56 8.11 -154.36 -1.25 4.31 16 14 N -0.64 -9.80 5.46 -15.51 -0.08 -9.88 16 15 C 0.72 10.25 8.53 -86.92 -0.74 9.51 16 16 O -0.56 -9.91 13.04 5.29 0.07 -9.84 16 17 N -0.72 -6.93 5.35 -58.78 -0.31 -7.25 16 18 C 0.12 1.02 6.11 -68.03 -0.42 0.61 16 19 H 0.14 1.44 7.40 -51.93 -0.38 1.05 16 20 C -0.18 -1.22 9.93 -26.85 -0.27 -1.49 16 21 C -0.14 -0.95 2.03 -154.55 -0.31 -1.26 16 22 C -0.12 -0.73 5.73 -26.44 -0.15 -0.88 16 23 C 0.06 0.47 6.85 37.32 0.26 0.72 16 24 O -0.38 -3.50 10.69 -35.23 -0.38 -3.88 16 25 C 0.06 0.45 6.84 37.33 0.26 0.70 16 26 C -0.11 -0.72 5.92 -26.44 -0.16 -0.88 16 27 N -0.30 -7.03 12.42 31.44 0.39 -6.64 16 28 H 0.27 7.61 7.22 -40.82 -0.29 7.32 16 29 H 0.05 1.12 7.94 -51.92 -0.41 0.71 16 30 H 0.03 0.89 8.01 -51.93 -0.42 0.48 16 31 H 0.17 2.73 8.06 -52.49 -0.42 2.31 16 32 H 0.16 3.14 5.91 -52.49 -0.31 2.83 16 33 H 0.41 4.97 8.84 -40.82 -0.36 4.61 16 34 H 0.40 2.82 6.85 -40.82 -0.28 2.54 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.37 6.16 -51.93 -0.32 0.05 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -34.31 364.25 -9.40 -43.71 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.21 Total: 6.18 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -3.81 Total: -4.47 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.52 Total: -57.07 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.31 Total: -13.72 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.88 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.31 -9.40 -43.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413535369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.518 kcal (2) G-P(sol) polarization free energy of solvation -34.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds