Wall clock time and date at job start Tue Mar 31 2020 12:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47011 * 179.97438 * 9 7 2 11 11 C 1.34967 * 125.97332 * 124.71504 * 10 9 7 12 12 C 1.35242 * 107.85567 * 179.83872 * 11 10 9 13 13 C 1.40403 * 107.86647 * 0.42003 * 12 11 10 14 14 N 1.40194 * 125.97125 * 179.71928 * 13 12 11 15 15 C 1.34779 * 120.00239 * 0.02562 * 14 13 12 16 16 O 1.21586 * 119.99925 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00003 * 180.02562 * 15 14 13 18 18 C 1.46501 * 119.99688 * 179.97438 * 17 15 14 19 19 H 1.08997 * 115.55667 * 9.32134 * 18 17 15 20 20 C 1.53065 * 117.50650 * 223.60596 * 18 17 15 21 21 C 1.52703 * 59.93552 * 252.53948 * 20 18 17 22 22 C 1.53241 * 117.88129 * 107.77065 * 21 20 18 23 23 C 1.53324 * 108.49311 * 196.25210 * 22 21 20 24 24 O 1.42881 * 109.32019 * 306.04260 * 23 22 21 25 25 C 1.42863 * 114.52841 * 64.35739 * 24 23 22 26 26 C 1.53245 * 117.88166 * 252.22995 * 21 20 18 27 27 N 1.31207 * 108.05446 * 359.73921 * 13 12 11 28 28 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 30 30 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 31 31 H 1.08001 * 126.07314 * 359.97438 * 11 10 9 32 32 H 1.07999 * 126.06831 * 180.13010 * 12 11 10 33 33 H 0.97002 * 120.00200 * 180.02562 * 14 13 12 34 34 H 0.96995 * 120.00034 * 359.97438 * 17 15 14 35 35 H 1.08998 * 117.50872 * 0.02562 * 20 18 17 36 36 H 1.09003 * 117.50712 * 145.06911 * 20 18 17 37 37 H 1.08998 * 109.63868 * 315.95553 * 22 21 20 38 38 H 1.09002 * 109.63242 * 76.54997 * 22 21 20 39 39 H 1.08999 * 109.50067 * 186.08921 * 23 22 21 40 40 H 1.09000 * 109.52020 * 66.01084 * 23 22 21 41 41 H 1.09003 * 109.49519 * 175.68259 * 25 24 23 42 42 H 1.09005 * 109.51944 * 55.60663 * 25 24 23 43 43 H 1.09004 * 109.63330 * 283.45173 * 26 21 20 44 44 H 1.09003 * 109.63572 * 44.04735 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2455 -4.6195 0.8984 12 6 3.2605 -5.4427 0.5506 13 6 3.8690 -4.9145 -0.5992 14 7 4.9655 -5.4650 -1.2774 15 6 5.5299 -6.6052 -0.8325 16 8 5.0884 -7.1561 0.1574 17 7 6.5844 -7.1341 -1.4842 18 6 7.1982 -8.3731 -1.0002 19 1 6.6543 -8.8897 -0.2094 20 6 8.7271 -8.4380 -0.9653 21 6 7.9515 -9.2305 -2.0152 22 6 8.0042 -8.7405 -3.4662 23 6 6.8659 -9.4084 -4.2467 24 8 6.9506 -10.8256 -4.0859 25 6 6.7522 -11.2836 -2.7473 26 6 7.8821 -10.7531 -1.8569 27 7 3.2322 -3.8154 -0.9278 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5567 0.8904 30 1 0.6247 -2.5570 -0.8895 31 1 1.5847 -4.7464 1.7431 32 1 3.5543 -6.3438 1.0684 33 1 5.3181 -5.0253 -2.0669 34 1 6.9369 -6.6944 -2.2736 35 1 9.2761 -7.5587 -1.3021 36 1 9.1889 -8.9976 -0.1518 37 1 7.8799 -7.6579 -3.4921 38 1 8.9617 -9.0127 -3.9102 39 1 6.9526 -9.1564 -5.3036 40 1 5.9074 -9.0558 -3.8660 41 1 6.7574 -12.3735 -2.7312 42 1 5.7945 -10.9188 -2.3758 43 1 8.8293 -11.1968 -2.1638 44 1 7.6769 -11.0042 -0.8163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413535369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:39 Heat of formation + Delta-G solvation = 9.844673 kcal Electronic energy + Delta-G solvation = -26296.389814 eV Core-core repulsion = 22443.619258 eV Total energy + Delta-G solvation = -3852.770556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34405 -41.39668 -40.34761 -37.99962 -36.39506 -35.55894 -34.41799 -32.52477 -32.16534 -31.03832 -30.66691 -28.16583 -25.35715 -24.77213 -24.31311 -23.63285 -22.58184 -22.04698 -21.41919 -20.03773 -19.34224 -19.16077 -18.27963 -17.41007 -17.03471 -16.93045 -16.74172 -16.35160 -15.94142 -15.82424 -15.73126 -15.56755 -15.04953 -14.91228 -14.38676 -14.20527 -14.03148 -13.92157 -13.71722 -13.48626 -13.22975 -12.97513 -12.66200 -12.56528 -12.31683 -12.03022 -11.97277 -11.71706 -11.66110 -11.54253 -11.35073 -11.21653 -11.00929 -10.69429 -10.25051 -9.91688 -9.73876 -9.15045 -8.77239 -6.55967 0.94914 1.01433 1.50527 1.57847 1.59094 1.77667 1.96812 2.26765 2.48107 2.80808 2.92333 3.00020 3.01796 3.60608 3.66119 3.79768 3.84997 3.86624 4.05799 4.13373 4.25075 4.46595 4.49359 4.56153 4.62715 4.66621 4.71219 4.74608 4.76670 4.81883 4.84973 4.91201 4.99673 5.06500 5.10171 5.22060 5.22888 5.47892 5.54051 5.75899 5.83562 5.94240 6.25825 6.26983 6.41555 6.63216 7.03982 7.19797 7.33987 8.58261 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025084 B = 0.002247 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.981101 B =12459.493650 C =12640.567231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.020 4.020 3 Si 1.123 2.877 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.620 4.620 8 H 0.045 0.955 9 C 0.260 3.740 10 N -0.345 5.345 11 C 0.055 3.945 12 C -0.289 4.289 13 C 0.287 3.713 14 N -0.635 5.635 15 C 0.716 3.284 16 O -0.598 6.598 17 N -0.693 5.693 18 C 0.091 3.909 19 H 0.124 0.876 20 C -0.165 4.165 21 C -0.128 4.128 22 C -0.114 4.114 23 C 0.059 3.941 24 O -0.402 6.402 25 C 0.057 3.943 26 C -0.113 4.113 27 N -0.346 5.346 28 H 0.261 0.739 29 H 0.054 0.946 30 H 0.017 0.983 31 H 0.201 0.799 32 H 0.169 0.831 33 H 0.421 0.579 34 H 0.412 0.588 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.041 0.959 41 H 0.108 0.892 42 H 0.041 0.959 43 H 0.087 0.913 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.901 -21.261 -5.442 28.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.219 4.219 3 Si 0.944 3.056 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.658 4.658 8 H 0.063 0.937 9 C 0.140 3.860 10 N -0.127 5.127 11 C -0.093 4.093 12 C -0.320 4.320 13 C 0.031 3.969 14 N -0.287 5.287 15 C 0.416 3.584 16 O -0.476 6.476 17 N -0.348 5.348 18 C -0.015 4.015 19 H 0.142 0.858 20 C -0.203 4.203 21 C -0.130 4.130 22 C -0.152 4.152 23 C -0.018 4.018 24 O -0.321 6.321 25 C -0.019 4.019 26 C -0.150 4.150 27 N -0.177 5.177 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.218 0.782 32 H 0.186 0.814 33 H 0.258 0.742 34 H 0.250 0.750 35 H 0.127 0.873 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.059 0.941 41 H 0.126 0.874 42 H 0.060 0.940 43 H 0.106 0.894 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.181 -19.208 -5.535 27.021 hybrid contribution 0.041 -1.591 0.064 1.593 sum 18.222 -20.799 -5.470 28.188 Atomic orbital electron populations 1.70917 1.07447 1.30213 1.47413 1.27282 0.96452 1.06092 0.92100 0.82838 0.73905 0.71004 0.77889 1.19772 1.19885 1.20327 1.22301 0.94657 0.92107 1.56762 0.93685 1.19421 0.86411 0.82785 0.97362 1.48557 1.23980 1.20289 1.19835 1.23173 1.00649 0.88828 0.96627 1.21703 1.02042 1.06527 1.01761 1.19069 0.90831 0.92870 0.94149 1.41342 1.30344 1.25331 1.31680 1.15675 0.80427 0.79598 0.82693 1.90831 1.65566 1.63024 1.28134 1.44255 1.31724 1.26768 1.32016 1.21665 0.92953 0.86359 1.00568 0.85849 1.23684 0.93093 1.02461 1.01068 1.22042 1.04002 0.94375 0.92541 1.21755 1.00492 1.00582 0.92321 1.22692 0.97154 0.80569 1.01380 1.87840 1.92938 1.22687 1.28634 1.22724 0.96984 1.00305 0.81938 1.21810 1.00390 0.91706 1.01123 1.77253 1.04775 1.18067 1.17582 0.92932 0.92824 0.96556 0.78178 0.81365 0.74176 0.75018 0.87303 0.86589 0.89876 0.89410 0.87609 0.94088 0.87447 0.94019 0.89421 0.89503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.03 13.65 21.45 0.29 -53.74 16 2 C -0.02 -1.10 5.46 84.65 0.46 -0.64 16 3 Si 1.12 49.76 29.90 68.60 2.05 51.81 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.62 -35.38 9.24 25.60 0.24 -35.14 16 8 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 9 C 0.26 13.41 5.57 85.63 0.48 13.89 16 10 N -0.34 -16.32 3.67 -351.84 -1.29 -17.61 16 11 C 0.06 2.20 11.44 83.52 0.96 3.15 16 12 C -0.29 -11.41 9.61 22.11 0.21 -11.20 16 13 C 0.29 11.47 8.11 133.31 1.08 12.55 16 14 N -0.64 -18.90 5.46 -321.23 -1.75 -20.66 16 15 C 0.72 19.83 8.53 179.05 1.53 21.35 16 16 O -0.60 -20.76 13.04 -3.99 -0.05 -20.81 16 17 N -0.69 -12.35 5.35 -458.13 -2.45 -14.80 16 18 C 0.09 1.44 6.11 44.92 0.27 1.72 16 19 H 0.12 2.46 7.40 -2.39 -0.02 2.44 16 20 C -0.16 -1.77 9.93 30.52 0.30 -1.46 16 21 C -0.13 -1.47 2.03 -52.21 -0.11 -1.58 16 22 C -0.11 -1.16 5.73 30.78 0.18 -0.99 16 23 C 0.06 0.79 6.85 72.09 0.49 1.29 16 24 O -0.40 -6.89 10.69 -148.98 -1.59 -8.49 16 25 C 0.06 0.77 6.84 72.09 0.49 1.26 16 26 C -0.11 -1.20 5.92 30.79 0.18 -1.02 16 27 N -0.35 -16.16 12.42 -54.44 -0.68 -16.84 16 28 H 0.26 15.11 7.22 -92.71 -0.67 14.44 16 29 H 0.05 2.66 7.94 -2.38 -0.02 2.64 16 30 H 0.02 0.90 8.01 -2.39 -0.02 0.88 16 31 H 0.20 6.27 8.06 -2.91 -0.02 6.25 16 32 H 0.17 6.46 5.91 -2.91 -0.02 6.44 16 33 H 0.42 9.83 8.84 -92.71 -0.82 9.01 16 34 H 0.41 4.92 6.85 -92.71 -0.64 4.28 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 0.63 6.16 -2.39 -0.01 0.61 16 38 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 43 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 Total: -1.00 -74.23 364.25 0.99 -73.25 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.31 Total: 24.70 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 6.77 Total: 3.19 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -5.88 Total: -123.65 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.64 Total: -29.30 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.81 kcal Total: -74.23 0.99 -73.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413535369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.090 kcal (2) G-P(sol) polarization free energy of solvation -74.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds