Wall clock time and date at job start Tue Mar 31 2020 12:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48496 * 109.47414 * 269.99925 * 3 2 1 5 5 H 1.48499 * 109.47340 * 30.00583 * 3 2 1 6 6 H 1.48504 * 109.47129 * 150.00375 * 3 2 1 7 7 C 1.37870 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00015 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00307 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97011 * 124.99894 * 10 9 7 12 12 C 1.35243 * 107.85395 * 180.02562 * 11 10 9 13 13 C 1.40407 * 107.86866 * 0.02562 * 12 11 10 14 14 N 1.40199 * 125.96932 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00397 * 359.97438 * 14 13 12 16 16 O 1.21596 * 119.99815 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00134 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00333 * 179.97438 * 17 15 14 19 19 H 1.09000 * 115.56634 * 350.72850 * 18 17 15 20 20 C 1.53055 * 117.50689 * 136.45462 * 18 17 15 21 21 C 1.52709 * 117.50942 * 205.00274 * 18 17 15 22 22 C 1.53243 * 117.86009 * 144.72208 * 21 18 17 23 23 C 1.53332 * 108.65737 * 163.75334 * 22 21 18 24 24 O 1.43317 * 109.07272 * 53.89541 * 23 22 21 25 25 C 1.42878 * 114.59916 * 295.68649 * 24 23 22 26 26 C 1.53256 * 117.85259 * 0.33481 * 21 18 17 27 27 N 1.31200 * 108.05242 * 0.26164 * 13 12 11 28 28 H 0.97000 * 120.00198 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47058 * 59.99561 * 9 7 2 30 30 H 1.09000 * 109.47399 * 300.00385 * 9 7 2 31 31 H 1.07997 * 126.07711 * 359.97438 * 11 10 9 32 32 H 1.08000 * 126.07042 * 180.02562 * 12 11 10 33 33 H 0.96998 * 119.99260 * 179.97438 * 14 13 12 34 34 H 0.97008 * 120.00037 * 0.02562 * 17 15 14 35 35 H 1.08995 * 117.50496 * 0.02562 * 20 18 17 36 36 H 1.08997 * 117.53633 * 214.92881 * 20 18 17 37 37 H 1.09002 * 109.63413 * 283.55506 * 22 21 18 38 38 H 1.08999 * 109.63162 * 43.95458 * 22 21 18 39 39 H 1.09004 * 109.49714 * 174.02882 * 23 22 21 40 40 H 1.09003 * 109.49957 * 294.12749 * 23 22 21 41 41 H 1.09001 * 109.49802 * 304.48408 * 25 24 23 42 42 H 1.09004 * 109.49478 * 184.38629 * 25 24 23 43 43 H 1.08992 * 109.63472 * 315.85019 * 26 21 18 44 44 H 1.09001 * 109.63083 * 76.25244 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.8546 -3.1139 -0.8960 12 6 5.0554 -4.4062 -0.5516 13 6 4.2938 -4.6690 0.5983 14 7 4.2230 -5.8937 1.2770 15 6 4.9279 -6.9526 0.8319 16 8 5.6251 -6.8459 -0.1587 17 7 4.8594 -8.1301 1.4841 18 6 5.6252 -9.2813 0.9999 19 1 6.0987 -9.1555 0.0262 20 6 6.3624 -10.1280 2.0403 21 6 5.1091 -10.6731 1.3586 22 6 5.2851 -11.7905 0.3249 23 6 5.0850 -13.1408 1.0233 24 8 3.8222 -13.1350 1.7009 25 6 3.7224 -12.1864 2.7647 26 6 3.8257 -10.7683 2.1908 27 7 3.6562 -3.5695 0.9237 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6802 0.8888 30 1 3.8746 -0.6798 -0.8911 31 1 5.2986 -2.6039 -1.7381 32 1 5.6891 -5.1111 -1.0693 33 1 3.6666 -5.9788 2.0670 34 1 4.3024 -8.2155 2.2737 35 1 6.2772 -9.8286 3.0848 36 1 7.3207 -10.5595 1.7513 37 1 4.5463 -11.6754 -0.4683 38 1 6.2881 -11.7426 -0.0991 39 1 5.1019 -13.9398 0.2820 40 1 5.8848 -13.2982 1.7469 41 1 4.5318 -12.3509 3.4760 42 1 2.7637 -12.3055 3.2696 43 1 3.8630 -10.0453 3.0056 44 1 2.9626 -10.5625 1.5577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413535384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:43 Heat of formation + Delta-G solvation = 40.190205 kcal Electronic energy + Delta-G solvation = -25981.400505 eV Core-core repulsion = 22129.945830 eV Total energy + Delta-G solvation = -3851.454675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91983 -40.35471 -39.32986 -37.26680 -34.75185 -33.66624 -33.05945 -31.65736 -31.17717 -30.00269 -29.35836 -27.09552 -24.23366 -23.76876 -23.44313 -22.31536 -21.31458 -20.43557 -19.89263 -19.24678 -18.16306 -17.17253 -16.88872 -16.44694 -16.32692 -15.97625 -15.46031 -15.31697 -15.11312 -14.51521 -14.42263 -14.24291 -14.11464 -13.65233 -13.33760 -13.07416 -12.80485 -12.53725 -12.45135 -12.31343 -12.26510 -11.89353 -11.77751 -11.17287 -11.14396 -10.92457 -10.78370 -10.65239 -10.46165 -10.14143 -10.00462 -9.89958 -9.78664 -9.52220 -8.90721 -8.76357 -8.17617 -7.48485 -6.23211 -4.25437 2.23114 2.55073 2.96396 3.15380 3.22494 3.23149 3.39854 3.43528 3.47823 3.80167 4.13809 4.18498 4.23128 4.29129 4.40676 4.47733 4.60231 4.77240 5.00594 5.04527 5.08111 5.15317 5.20263 5.25214 5.34848 5.38955 5.50834 5.57222 5.61102 5.69928 5.77471 5.79009 6.11712 6.24835 6.35152 6.46079 6.57221 6.71515 6.80022 6.92575 7.27796 7.41822 7.81434 7.85770 8.34162 8.51497 8.58574 8.86751 9.31792 10.89490 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.002096 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.026467 B =13353.400000 C =13900.292192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.282 4.282 13 C 0.278 3.722 14 N -0.642 5.642 15 C 0.718 3.282 16 O -0.565 6.565 17 N -0.714 5.714 18 C 0.121 3.879 19 H 0.142 0.858 20 C -0.185 4.185 21 C -0.138 4.138 22 C -0.116 4.116 23 C 0.065 3.935 24 O -0.385 6.385 25 C 0.066 3.934 26 C -0.119 4.119 27 N -0.299 5.299 28 H 0.268 0.732 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.169 0.831 32 H 0.163 0.837 33 H 0.408 0.592 34 H 0.397 0.603 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.767 -23.790 4.876 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.313 4.313 13 C 0.024 3.976 14 N -0.292 5.292 15 C 0.418 3.582 16 O -0.440 6.440 17 N -0.368 5.368 18 C 0.014 3.986 19 H 0.159 0.841 20 C -0.224 4.224 21 C -0.140 4.140 22 C -0.154 4.154 23 C -0.012 4.012 24 O -0.303 6.303 25 C -0.011 4.011 26 C -0.157 4.157 27 N -0.130 5.130 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.186 0.814 32 H 0.180 0.820 33 H 0.242 0.758 34 H 0.232 0.768 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.232 -22.981 4.726 26.459 hybrid contribution 0.458 0.789 0.363 0.982 sum 12.690 -22.192 5.089 26.065 Atomic orbital electron populations 1.69874 1.06153 1.27284 1.49213 1.24838 0.94878 0.98807 0.94291 0.86903 0.80428 0.83829 0.78919 1.19707 1.20554 1.18868 1.21112 0.87809 0.95695 1.52579 0.89648 1.20040 0.97436 0.73035 0.98173 1.48592 1.32523 1.10132 1.18952 1.22554 0.96035 0.94641 0.96625 1.21534 1.11533 0.96710 1.01545 1.18771 0.98687 0.85823 0.94345 1.41343 1.49075 1.07369 1.31408 1.15523 0.80308 0.79600 0.82816 1.90861 1.43844 1.82828 1.26497 1.44368 1.51113 1.08985 1.32359 1.21476 0.97086 0.81097 0.98931 0.84070 1.23688 0.96119 1.03636 0.98962 1.21979 0.95535 0.95554 1.00919 1.21793 1.02968 0.93443 0.97209 1.22661 0.85839 0.96840 0.95857 1.87954 1.35014 1.58532 1.48841 1.22560 1.02091 0.87505 0.88913 1.21758 0.96544 0.98087 0.99267 1.77381 1.23646 0.95572 1.16384 0.92192 0.94066 0.93322 0.81394 0.81992 0.75766 0.76781 0.88378 0.87819 0.90257 0.90363 0.88685 0.93027 0.93084 0.88737 0.90945 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.13 27.47 -169.99 -4.67 15.46 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 7 C -0.53 -15.08 9.78 -34.44 -0.34 -15.42 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 9 C 0.23 5.51 5.33 -5.19 -0.03 5.48 16 10 N -0.32 -7.27 3.67 -62.56 -0.23 -7.50 16 11 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 12 C -0.28 -5.52 9.61 -39.83 -0.38 -5.91 16 13 C 0.28 5.56 8.11 -154.36 -1.25 4.31 16 14 N -0.64 -9.89 5.45 -15.51 -0.08 -9.97 16 15 C 0.72 10.39 8.53 -86.92 -0.74 9.65 16 16 O -0.57 -9.98 13.04 5.28 0.07 -9.91 16 17 N -0.71 -7.09 5.35 -58.79 -0.31 -7.41 16 18 C 0.12 1.07 6.15 -68.05 -0.42 0.65 16 19 H 0.14 1.47 7.40 -51.93 -0.38 1.08 16 20 C -0.19 -1.21 9.85 -26.84 -0.26 -1.47 16 21 C -0.14 -0.96 2.03 -154.54 -0.31 -1.27 16 22 C -0.12 -0.75 5.90 -26.43 -0.16 -0.91 16 23 C 0.06 0.40 6.89 37.33 0.26 0.66 16 24 O -0.38 -3.27 10.70 -35.23 -0.38 -3.65 16 25 C 0.07 0.43 6.85 37.33 0.26 0.68 16 26 C -0.12 -0.77 5.33 -26.43 -0.14 -0.91 16 27 N -0.30 -6.86 12.41 31.44 0.39 -6.47 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 30 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 31 H 0.17 2.57 8.06 -52.49 -0.42 2.14 16 32 H 0.16 3.11 5.91 -52.49 -0.31 2.80 16 33 H 0.41 5.07 8.84 -40.82 -0.36 4.71 16 34 H 0.40 2.91 7.28 -40.82 -0.30 2.61 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.37 7.00 -51.93 -0.36 0.01 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 362.82 15.07 5.47 5.47 Total: -1.00 -34.94 362.82 -9.08 -44.02 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.29 Total: 7.47 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.82 Total: -1.65 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.54 Total: -57.21 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.31 Total: -13.56 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.94 -9.08 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413535384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.215 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds