Wall clock time and date at job start Tue Mar 31 2020 12:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99603 * 2 1 4 4 H 1.48496 * 109.47414 * 269.99925 * 3 2 1 5 5 H 1.48499 * 109.47340 * 30.00583 * 3 2 1 6 6 H 1.48504 * 109.47129 * 150.00375 * 3 2 1 7 7 C 1.37870 * 120.00366 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00015 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00307 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97011 * 124.99894 * 10 9 7 12 12 C 1.35243 * 107.85395 * 180.02562 * 11 10 9 13 13 C 1.40407 * 107.86866 * 0.02562 * 12 11 10 14 14 N 1.40199 * 125.96932 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00397 * 359.97438 * 14 13 12 16 16 O 1.21596 * 119.99815 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00134 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00333 * 179.97438 * 17 15 14 19 19 H 1.09000 * 115.56634 * 350.72850 * 18 17 15 20 20 C 1.53055 * 117.50689 * 136.45462 * 18 17 15 21 21 C 1.52709 * 117.50942 * 205.00274 * 18 17 15 22 22 C 1.53243 * 117.86009 * 144.72208 * 21 18 17 23 23 C 1.53332 * 108.65737 * 163.75334 * 22 21 18 24 24 O 1.43317 * 109.07272 * 53.89541 * 23 22 21 25 25 C 1.42878 * 114.59916 * 295.68649 * 24 23 22 26 26 C 1.53256 * 117.85259 * 0.33481 * 21 18 17 27 27 N 1.31200 * 108.05242 * 0.26164 * 13 12 11 28 28 H 0.97000 * 120.00198 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47058 * 59.99561 * 9 7 2 30 30 H 1.09000 * 109.47399 * 300.00385 * 9 7 2 31 31 H 1.07997 * 126.07711 * 359.97438 * 11 10 9 32 32 H 1.08000 * 126.07042 * 180.02562 * 12 11 10 33 33 H 0.96998 * 119.99260 * 179.97438 * 14 13 12 34 34 H 0.97008 * 120.00037 * 0.02562 * 17 15 14 35 35 H 1.08995 * 117.50496 * 0.02562 * 20 18 17 36 36 H 1.08997 * 117.53633 * 214.92881 * 20 18 17 37 37 H 1.09002 * 109.63413 * 283.55506 * 22 21 18 38 38 H 1.08999 * 109.63162 * 43.95458 * 22 21 18 39 39 H 1.09004 * 109.49714 * 174.02882 * 23 22 21 40 40 H 1.09003 * 109.49957 * 294.12749 * 23 22 21 41 41 H 1.09001 * 109.49802 * 304.48408 * 25 24 23 42 42 H 1.09004 * 109.49478 * 184.38629 * 25 24 23 43 43 H 1.08992 * 109.63472 * 315.85019 * 26 21 18 44 44 H 1.09001 * 109.63083 * 76.25244 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0000 -2.5751 -0.0010 11 6 4.8546 -3.1139 -0.8960 12 6 5.0554 -4.4062 -0.5516 13 6 4.2938 -4.6690 0.5983 14 7 4.2230 -5.8937 1.2770 15 6 4.9279 -6.9526 0.8319 16 8 5.6251 -6.8459 -0.1587 17 7 4.8594 -8.1301 1.4841 18 6 5.6252 -9.2813 0.9999 19 1 6.0987 -9.1555 0.0262 20 6 6.3624 -10.1280 2.0403 21 6 5.1091 -10.6731 1.3586 22 6 5.2851 -11.7905 0.3249 23 6 5.0850 -13.1408 1.0233 24 8 3.8222 -13.1350 1.7009 25 6 3.7224 -12.1864 2.7647 26 6 3.8257 -10.7683 2.1908 27 7 3.6562 -3.5695 0.9237 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6802 0.8888 30 1 3.8746 -0.6798 -0.8911 31 1 5.2986 -2.6039 -1.7381 32 1 5.6891 -5.1111 -1.0693 33 1 3.6666 -5.9788 2.0670 34 1 4.3024 -8.2155 2.2737 35 1 6.2772 -9.8286 3.0848 36 1 7.3207 -10.5595 1.7513 37 1 4.5463 -11.6754 -0.4683 38 1 6.2881 -11.7426 -0.0991 39 1 5.1019 -13.9398 0.2820 40 1 5.8848 -13.2982 1.7469 41 1 4.5318 -12.3509 3.4760 42 1 2.7637 -12.3055 3.2696 43 1 3.8630 -10.0453 3.0056 44 1 2.9626 -10.5625 1.5577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413535384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:42 Heat of formation + Delta-G solvation = 15.161327 kcal Electronic energy + Delta-G solvation = -25982.485838 eV Core-core repulsion = 22129.945830 eV Total energy + Delta-G solvation = -3852.540008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27432 -41.31319 -40.32036 -37.96360 -36.19903 -35.25253 -34.37425 -32.90311 -32.14721 -31.00591 -30.60417 -28.91056 -25.02892 -24.66464 -24.25883 -23.74508 -22.39556 -21.79492 -21.31681 -19.86221 -19.30894 -19.08585 -18.25286 -17.52849 -16.96692 -16.83683 -16.70649 -16.52463 -16.10886 -15.77797 -15.58788 -15.34387 -14.93854 -14.79933 -14.69422 -14.34663 -13.98541 -13.88708 -13.80985 -13.30632 -13.06165 -12.95213 -12.71355 -12.52089 -12.29386 -12.28530 -11.83232 -11.65587 -11.62528 -11.49652 -11.45681 -11.18157 -11.03491 -10.86523 -10.51704 -9.82224 -9.63432 -9.03366 -8.37043 -6.47285 1.00995 1.08078 1.37106 1.40280 1.49944 1.64897 2.04796 2.29405 2.31932 2.83042 2.95106 2.96909 3.04945 3.58744 3.68460 3.86422 3.89765 3.92268 4.09925 4.20815 4.29558 4.48620 4.53527 4.61008 4.63898 4.69816 4.75352 4.80032 4.81049 4.87250 4.91610 4.93357 4.99046 5.11262 5.13728 5.25094 5.25387 5.26616 5.50915 5.77740 5.91258 6.01893 6.31390 6.41710 6.57609 6.68628 7.09641 7.15815 7.37123 8.80054 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.002096 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.026467 B =13353.400000 C =13900.292192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.061 3.939 12 C -0.293 4.293 13 C 0.284 3.716 14 N -0.637 5.637 15 C 0.716 3.284 16 O -0.598 6.598 17 N -0.693 5.693 18 C 0.092 3.908 19 H 0.123 0.877 20 C -0.162 4.162 21 C -0.129 4.129 22 C -0.117 4.117 23 C 0.063 3.937 24 O -0.410 6.410 25 C 0.064 3.936 26 C -0.120 4.120 27 N -0.349 5.349 28 H 0.272 0.728 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.211 0.789 32 H 0.168 0.832 33 H 0.420 0.580 34 H 0.412 0.588 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.266 -23.861 5.368 28.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.177 1.177 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.584 4.584 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.087 4.087 12 C -0.325 4.325 13 C 0.028 3.972 14 N -0.289 5.289 15 C 0.416 3.584 16 O -0.476 6.476 17 N -0.348 5.348 18 C -0.014 4.014 19 H 0.141 0.859 20 C -0.201 4.201 21 C -0.131 4.131 22 C -0.155 4.155 23 C -0.013 4.013 24 O -0.329 6.329 25 C -0.013 4.013 26 C -0.157 4.157 27 N -0.180 5.180 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.228 0.772 32 H 0.185 0.815 33 H 0.257 0.743 34 H 0.249 0.751 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.740 -23.135 5.254 27.930 hybrid contribution -0.355 0.575 0.209 0.708 sum 14.385 -22.560 5.463 27.308 Atomic orbital electron populations 1.70053 1.08579 1.28791 1.50727 1.25939 0.95790 1.03593 0.93255 0.85603 0.79497 0.77137 0.80061 1.17750 1.20662 1.16192 1.21233 0.90538 0.93703 1.52957 0.95592 1.19889 0.94123 0.74372 0.99659 1.48493 1.34038 1.09973 1.20198 1.23246 0.94368 0.94590 0.96479 1.21729 1.11892 0.97138 1.01699 1.19110 0.97295 0.86442 0.94345 1.41368 1.49506 1.06365 1.31639 1.15676 0.79813 0.80242 0.82689 1.90826 1.45218 1.83474 1.28062 1.44205 1.50760 1.07720 1.32084 1.21579 0.98953 0.81420 0.99463 0.85887 1.23760 0.96363 1.01204 0.98751 1.22013 0.96182 0.94012 1.00868 1.21817 1.03267 0.93612 0.96797 1.22782 0.85480 0.96778 0.96281 1.87924 1.36246 1.59179 1.49536 1.22672 1.03073 0.86821 0.88695 1.21781 0.95631 0.98873 0.99445 1.77297 1.25785 0.96783 1.18105 0.91899 0.93625 0.90018 0.77229 0.81507 0.74313 0.75077 0.87187 0.86446 0.91759 0.89097 0.87787 0.91703 0.91777 0.88064 0.89359 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.96 21.44 0.30 -57.98 16 2 C 0.01 0.73 5.47 84.65 0.46 1.20 16 3 Si 0.96 40.74 27.47 68.60 1.88 42.62 16 4 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 7 C -0.55 -31.67 9.78 25.60 0.25 -31.42 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 9 C 0.24 11.11 5.33 85.63 0.46 11.57 16 10 N -0.35 -15.58 3.67 -351.84 -1.29 -16.87 16 11 C 0.06 2.28 11.44 83.52 0.96 3.23 16 12 C -0.29 -11.37 9.61 22.11 0.21 -11.16 16 13 C 0.28 11.44 8.11 133.32 1.08 12.52 16 14 N -0.64 -19.66 5.45 -321.23 -1.75 -21.41 16 15 C 0.72 20.53 8.53 179.06 1.53 22.06 16 16 O -0.60 -21.16 13.04 -4.02 -0.05 -21.21 16 17 N -0.69 -13.12 5.35 -458.19 -2.45 -15.57 16 18 C 0.09 1.53 6.15 44.91 0.28 1.81 16 19 H 0.12 2.55 7.40 -2.39 -0.02 2.53 16 20 C -0.16 -1.70 9.85 30.52 0.30 -1.40 16 21 C -0.13 -1.59 2.03 -52.20 -0.11 -1.69 16 22 C -0.12 -1.38 5.90 30.79 0.18 -1.19 16 23 C 0.06 0.69 6.89 72.09 0.50 1.18 16 24 O -0.41 -6.46 10.70 -148.98 -1.59 -8.06 16 25 C 0.06 0.71 6.85 72.09 0.49 1.21 16 26 C -0.12 -1.38 5.33 30.79 0.16 -1.21 16 27 N -0.35 -16.33 12.41 -54.43 -0.68 -17.01 16 28 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16 29 H 0.05 2.07 7.20 -2.39 -0.02 2.05 16 30 H 0.08 3.25 7.50 -2.39 -0.02 3.23 16 31 H 0.21 5.73 8.06 -2.91 -0.02 5.70 16 32 H 0.17 6.32 5.91 -2.91 -0.02 6.31 16 33 H 0.42 10.44 8.84 -92.71 -0.82 9.62 16 34 H 0.41 5.40 7.28 -92.70 -0.67 4.73 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 0.71 7.00 -2.39 -0.02 0.69 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -79.71 362.82 0.61 -79.10 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: -0.51 Total: 29.66 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 6.75 Total: 6.71 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -5.87 Total: -128.83 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.65 Total: -29.26 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 1.88 Total: 42.62 kcal Total: -79.71 0.61 -79.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413535384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.263 kcal (2) G-P(sol) polarization free energy of solvation -79.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds