Wall clock time and date at job start Tue Mar 31 2020 12:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00521 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00167 * 3 2 1 7 7 C 1.37873 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97432 * 125.00157 * 10 9 7 12 12 C 1.35241 * 107.85989 * 179.97438 * 11 10 9 13 13 C 1.40404 * 107.86499 * 0.02562 * 12 11 10 14 14 N 1.40197 * 125.96941 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00233 * 359.97438 * 14 13 12 16 16 O 1.21595 * 119.99751 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00183 * 180.02562 * 15 14 13 18 18 C 1.45580 * 117.16990 * 359.73910 * 17 15 14 19 19 C 1.53490 * 108.66823 * 153.81624 * 18 17 15 20 20 C 1.52713 * 107.64038 * 58.03297 * 19 18 17 21 21 C 1.51324 * 111.49963 * 294.28544 * 20 19 18 22 22 H 1.08996 * 108.92498 * 273.99012 * 21 20 19 23 23 C 1.54929 * 109.37917 * 154.31286 * 21 20 19 24 24 O 1.44718 * 104.27827 * 212.27346 * 23 21 20 25 25 C 1.44791 * 104.58959 * 41.66148 * 24 23 21 26 26 C 1.43705 * 117.17301 * 180.02562 * 17 15 14 27 27 H 1.09004 * 108.40650 * 300.45059 * 26 17 15 28 28 N 1.31212 * 108.05360 * 359.74118 * 13 12 11 29 29 H 0.97001 * 119.99269 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 31 31 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 32 32 H 1.08005 * 126.06683 * 359.97438 * 11 10 9 33 33 H 1.08002 * 126.06697 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99818 * 179.97438 * 14 13 12 35 35 H 1.08999 * 109.58006 * 273.74986 * 18 17 15 36 36 H 1.09000 * 109.58511 * 34.16530 * 18 17 15 37 37 H 1.09000 * 109.96871 * 298.44699 * 19 18 17 38 38 H 1.09000 * 109.80800 * 177.53042 * 19 18 17 39 39 H 1.08998 * 109.07012 * 173.76409 * 20 19 18 40 40 H 1.08993 * 109.07254 * 54.80540 * 20 19 18 41 41 H 1.09000 * 110.47266 * 93.57565 * 23 21 20 42 42 H 1.08999 * 110.58354 * 331.02587 * 23 21 20 43 43 H 1.09003 * 110.52862 * 199.15608 * 25 24 23 44 44 H 1.09001 * 110.64192 * 76.47334 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.8544 -3.1142 -0.8959 12 6 5.0559 -4.4063 -0.5509 13 6 4.2949 -4.6687 0.5994 14 7 4.2248 -5.8931 1.2788 15 6 4.9302 -6.9520 0.8340 16 8 5.6269 -6.8455 -0.1568 17 7 4.8624 -8.1290 1.4868 18 6 4.0133 -8.1862 2.6679 19 6 3.5463 -9.6347 2.8676 20 6 4.7918 -10.5079 3.0036 21 6 5.5921 -10.5363 1.7196 22 1 5.1929 -11.3163 1.0714 23 6 7.0756 -10.8424 2.0451 24 8 7.8189 -10.1209 1.0346 25 6 7.1408 -8.8464 0.9233 26 6 5.6396 -9.2171 0.9603 27 1 5.3125 -9.4110 -0.0613 28 7 3.6655 -3.5662 0.9309 29 1 -0.4849 0.8401 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 5.2984 -2.6042 -1.7380 33 1 5.6892 -5.1113 -1.0689 34 1 3.6687 -5.9781 2.0690 35 1 4.5783 -7.8575 3.5402 36 1 3.1468 -7.5403 2.5266 37 1 2.9603 -9.9588 2.0076 38 1 2.9440 -9.7070 3.7732 39 1 4.4886 -11.5237 3.2569 40 1 5.4173 -10.1139 3.8045 41 1 7.2695 -11.9123 1.9697 42 1 7.3326 -10.4784 3.0399 43 1 7.3916 -8.3610 -0.0199 44 1 7.3956 -8.2009 1.7638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476179319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:14 Heat of formation + Delta-G solvation = 31.702049 kcal Electronic energy + Delta-G solvation = -27109.882620 eV Core-core repulsion = 23258.059871 eV Total energy + Delta-G solvation = -3851.822749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51160 -40.45271 -39.11966 -36.87846 -34.95250 -33.83483 -33.21434 -31.72491 -31.10461 -29.40983 -28.55055 -27.06871 -25.80704 -23.81923 -22.96063 -22.66902 -21.77649 -20.52592 -19.70005 -18.80348 -18.22819 -17.07311 -16.78417 -16.60844 -16.33551 -16.18796 -15.54692 -15.18804 -14.70952 -14.56307 -14.48883 -14.26206 -14.18712 -13.64684 -13.23118 -13.14806 -13.01973 -12.56102 -12.43142 -12.29534 -12.12637 -11.87771 -11.61149 -11.21649 -11.16665 -10.99921 -10.95366 -10.76464 -10.64713 -10.16125 -10.08956 -10.00106 -9.73352 -9.52402 -8.89534 -8.76616 -8.17441 -7.48289 -6.23713 -4.25860 2.21192 2.55611 2.99884 3.14748 3.20426 3.22731 3.29915 3.73174 3.76959 3.87381 4.09878 4.18185 4.22899 4.38045 4.43305 4.55817 4.84961 4.86633 4.99932 5.03978 5.06871 5.14829 5.26842 5.31632 5.39765 5.46238 5.48856 5.56948 5.65643 5.69506 5.78935 5.82290 6.09835 6.25658 6.32371 6.46063 6.48976 6.59724 6.75031 6.80877 7.27226 7.40767 7.75612 7.83519 8.33884 8.47985 8.58224 8.86150 9.31435 10.89025 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.002602 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.109906 B =10759.729453 C =11463.364419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.281 4.281 13 C 0.277 3.723 14 N -0.641 5.641 15 C 0.709 3.291 16 O -0.562 6.562 17 N -0.609 5.609 18 C 0.103 3.897 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.122 4.122 22 H 0.092 0.908 23 C 0.047 3.953 24 O -0.373 6.373 25 C 0.039 3.961 26 C 0.147 3.853 27 H 0.081 0.919 28 N -0.300 5.300 29 H 0.268 0.732 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.169 0.831 33 H 0.163 0.837 34 H 0.408 0.592 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.283 -21.366 6.560 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.313 4.313 13 C 0.022 3.978 14 N -0.293 5.293 15 C 0.409 3.591 16 O -0.437 6.437 17 N -0.348 5.348 18 C -0.019 4.019 19 C -0.166 4.166 20 C -0.150 4.150 21 C -0.141 4.141 22 H 0.110 0.890 23 C -0.030 4.030 24 O -0.291 6.291 25 C -0.039 4.039 26 C 0.042 3.958 27 H 0.099 0.901 28 N -0.131 5.131 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.186 0.814 33 H 0.180 0.820 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.131 0.869 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.976 -20.627 6.556 24.268 hybrid contribution 0.185 0.644 0.010 0.670 sum 11.161 -19.983 6.566 23.811 Atomic orbital electron populations 1.69879 1.06161 1.27281 1.49238 1.24836 0.94871 0.98801 0.94273 0.86906 0.80442 0.83823 0.78932 1.19702 1.20553 1.18848 1.21111 0.87817 0.95685 1.52577 0.89662 1.20038 0.97416 0.73041 0.98171 1.48586 1.32712 1.10290 1.18602 1.22555 0.95897 0.94689 0.96711 1.21535 1.11409 0.96681 1.01638 1.18808 0.98828 0.85848 0.94300 1.41607 1.48962 1.07319 1.31412 1.15647 0.80588 0.79907 0.82952 1.90851 1.43767 1.82618 1.26439 1.46027 1.49269 1.09661 1.29794 1.21633 0.93999 0.98586 0.87717 1.21788 0.97689 0.93751 1.03381 1.21149 0.96627 1.00887 0.96383 1.21994 0.97370 0.96687 0.98077 0.89001 1.23770 0.88787 0.98001 0.92419 1.89326 1.52834 1.28410 1.58559 1.24117 0.89955 0.85977 1.03870 1.20847 0.91585 0.85569 0.97849 0.90094 1.77374 1.24177 0.95596 1.15906 0.92195 0.94077 0.93322 0.81417 0.81960 0.75515 0.91326 0.90126 0.90666 0.89673 0.90880 0.91339 0.88826 0.91937 0.86896 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 7 C -0.53 -15.03 9.79 -34.44 -0.34 -15.36 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 C 0.23 5.49 5.33 -5.19 -0.03 5.47 16 10 N -0.32 -7.24 3.67 -62.55 -0.23 -7.47 16 11 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 12 C -0.28 -5.47 9.61 -39.83 -0.38 -5.85 16 13 C 0.28 5.50 8.11 -154.36 -1.25 4.25 16 14 N -0.64 -9.99 5.26 -15.50 -0.08 -10.07 16 15 C 0.71 10.37 7.81 -86.92 -0.68 9.69 16 16 O -0.56 -9.66 11.63 5.28 0.06 -9.60 16 17 N -0.61 -6.53 2.97 -173.66 -0.52 -7.05 16 18 C 0.10 0.80 5.70 -4.28 -0.02 0.77 16 19 C -0.13 -0.73 6.11 -26.62 -0.16 -0.89 16 20 C -0.11 -0.59 5.29 -27.72 -0.15 -0.74 16 21 C -0.12 -0.86 3.19 -90.82 -0.29 -1.15 16 22 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 23 C 0.05 0.35 7.11 38.18 0.27 0.62 16 24 O -0.37 -4.17 11.70 -35.23 -0.41 -4.58 16 25 C 0.04 0.44 6.13 38.04 0.23 0.67 16 26 C 0.15 1.48 2.82 -68.90 -0.19 1.29 16 27 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 28 N -0.30 -6.83 12.43 31.44 0.39 -6.44 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 31 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 32 H 0.17 2.56 8.06 -52.48 -0.42 2.13 16 33 H 0.16 3.07 5.91 -52.49 -0.31 2.76 16 34 H 0.41 5.28 6.38 -40.82 -0.26 5.02 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.61 6.31 -51.93 -0.33 0.29 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.35 7.42 -51.93 -0.39 -0.03 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.42 7.46 -51.93 -0.39 0.03 16 43 H 0.11 1.47 7.21 -51.93 -0.37 1.09 16 44 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -34.04 348.62 -8.91 -42.96 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.20 Total: 5.79 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -3.29 Total: 1.58 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: 0.34 Total: -56.81 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.35 Total: -14.18 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.04 -8.91 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476179319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.658 kcal (2) G-P(sol) polarization free energy of solvation -34.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds