Wall clock time and date at job start Tue Mar 31 2020 12:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47160 * 270.00499 * 3 2 1 5 5 H 1.48503 * 109.47061 * 30.00521 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00167 * 3 2 1 7 7 C 1.37873 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00172 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 179.97438 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97432 * 125.00157 * 10 9 7 12 12 C 1.35241 * 107.85989 * 179.97438 * 11 10 9 13 13 C 1.40404 * 107.86499 * 0.02562 * 12 11 10 14 14 N 1.40197 * 125.96941 * 180.02562 * 13 12 11 15 15 C 1.34779 * 120.00233 * 359.97438 * 14 13 12 16 16 O 1.21595 * 119.99751 * 359.97438 * 15 14 13 17 17 N 1.34769 * 120.00183 * 180.02562 * 15 14 13 18 18 C 1.45580 * 117.16990 * 359.73910 * 17 15 14 19 19 C 1.53490 * 108.66823 * 153.81624 * 18 17 15 20 20 C 1.52713 * 107.64038 * 58.03297 * 19 18 17 21 21 C 1.51324 * 111.49963 * 294.28544 * 20 19 18 22 22 H 1.08996 * 108.92498 * 273.99012 * 21 20 19 23 23 C 1.54929 * 109.37917 * 154.31286 * 21 20 19 24 24 O 1.44718 * 104.27827 * 212.27346 * 23 21 20 25 25 C 1.44791 * 104.58959 * 41.66148 * 24 23 21 26 26 C 1.43705 * 117.17301 * 180.02562 * 17 15 14 27 27 H 1.09004 * 108.40650 * 300.45059 * 26 17 15 28 28 N 1.31212 * 108.05360 * 359.74118 * 13 12 11 29 29 H 0.97001 * 119.99269 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 31 31 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 32 32 H 1.08005 * 126.06683 * 359.97438 * 11 10 9 33 33 H 1.08002 * 126.06697 * 179.97438 * 12 11 10 34 34 H 0.96999 * 119.99818 * 179.97438 * 14 13 12 35 35 H 1.08999 * 109.58006 * 273.74986 * 18 17 15 36 36 H 1.09000 * 109.58511 * 34.16530 * 18 17 15 37 37 H 1.09000 * 109.96871 * 298.44699 * 19 18 17 38 38 H 1.09000 * 109.80800 * 177.53042 * 19 18 17 39 39 H 1.08998 * 109.07012 * 173.76409 * 20 19 18 40 40 H 1.08993 * 109.07254 * 54.80540 * 20 19 18 41 41 H 1.09000 * 110.47266 * 93.57565 * 23 21 20 42 42 H 1.08999 * 110.58354 * 331.02587 * 23 21 20 43 43 H 1.09003 * 110.52862 * 199.15608 * 25 24 23 44 44 H 1.09001 * 110.64192 * 76.47334 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.8544 -3.1142 -0.8959 12 6 5.0559 -4.4063 -0.5509 13 6 4.2949 -4.6687 0.5994 14 7 4.2248 -5.8931 1.2788 15 6 4.9302 -6.9520 0.8340 16 8 5.6269 -6.8455 -0.1568 17 7 4.8624 -8.1290 1.4868 18 6 4.0133 -8.1862 2.6679 19 6 3.5463 -9.6347 2.8676 20 6 4.7918 -10.5079 3.0036 21 6 5.5921 -10.5363 1.7196 22 1 5.1929 -11.3163 1.0714 23 6 7.0756 -10.8424 2.0451 24 8 7.8189 -10.1209 1.0346 25 6 7.1408 -8.8464 0.9233 26 6 5.6396 -9.2171 0.9603 27 1 5.3125 -9.4110 -0.0613 28 7 3.6655 -3.5662 0.9309 29 1 -0.4849 0.8401 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8745 -0.6801 -0.8912 32 1 5.2984 -2.6042 -1.7380 33 1 5.6892 -5.1113 -1.0689 34 1 3.6687 -5.9781 2.0690 35 1 4.5783 -7.8575 3.5402 36 1 3.1468 -7.5403 2.5266 37 1 2.9603 -9.9588 2.0076 38 1 2.9440 -9.7070 3.7732 39 1 4.4886 -11.5237 3.2569 40 1 5.4173 -10.1139 3.8045 41 1 7.2695 -11.9123 1.9697 42 1 7.3326 -10.4784 3.0399 43 1 7.3916 -8.3610 -0.0199 44 1 7.3956 -8.2009 1.7638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476179319.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:13 Heat of formation + Delta-G solvation = 7.998242 kcal Electronic energy + Delta-G solvation = -27110.910494 eV Core-core repulsion = 23258.059871 eV Total energy + Delta-G solvation = -3852.850623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.58281 -41.81409 -40.16065 -37.70391 -36.36034 -35.26146 -34.50947 -33.08799 -32.26445 -30.97212 -29.50802 -28.74591 -26.50497 -25.01584 -24.19477 -23.53080 -23.00316 -21.98104 -21.03817 -19.74602 -19.17542 -19.08882 -18.10843 -17.58665 -17.43102 -17.14457 -16.72357 -16.35653 -16.11573 -15.78947 -15.46285 -15.20473 -15.11258 -14.83040 -14.77196 -14.36189 -14.06192 -13.85918 -13.81823 -13.70259 -13.11886 -12.99183 -12.60062 -12.52869 -12.33660 -12.20633 -11.83840 -11.75754 -11.63707 -11.62877 -11.50552 -11.45127 -11.00860 -10.91515 -10.86433 -9.89478 -9.70778 -9.04354 -8.37117 -6.47225 0.99436 1.07700 1.37227 1.40126 1.49846 1.63352 1.95323 2.29417 2.33123 2.73065 2.95630 3.03283 3.32430 3.61762 3.73786 3.84615 3.84909 3.94137 4.15797 4.18734 4.24663 4.33245 4.51650 4.58581 4.60975 4.69220 4.74791 4.78757 4.81149 4.84131 4.86965 4.93100 4.97127 5.04618 5.13872 5.17388 5.24882 5.35134 5.48197 5.62547 5.78209 5.89913 6.01838 6.41211 6.51667 6.59836 7.05460 7.15848 7.30224 8.80008 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.028767 B = 0.002602 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.109906 B =10759.729453 C =11463.364419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.254 1.254 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.026 0.974 9 C 0.240 3.760 10 N -0.345 5.345 11 C 0.061 3.939 12 C -0.292 4.292 13 C 0.282 3.718 14 N -0.636 5.636 15 C 0.703 3.297 16 O -0.590 6.590 17 N -0.595 5.595 18 C 0.092 3.908 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.114 4.114 22 H 0.103 0.897 23 C 0.043 3.957 24 O -0.394 6.394 25 C 0.044 3.956 26 C 0.145 3.855 27 H 0.064 0.936 28 N -0.348 5.348 29 H 0.272 0.728 30 H 0.046 0.954 31 H 0.082 0.918 32 H 0.210 0.790 33 H 0.168 0.832 34 H 0.418 0.582 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.844 -21.906 7.425 26.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.584 4.584 8 H 0.045 0.955 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.087 4.087 12 C -0.324 4.324 13 C 0.027 3.973 14 N -0.290 5.290 15 C 0.404 3.596 16 O -0.468 6.468 17 N -0.332 5.332 18 C -0.030 4.030 19 C -0.160 4.160 20 C -0.147 4.147 21 C -0.133 4.133 22 H 0.121 0.879 23 C -0.033 4.033 24 O -0.312 6.312 25 C -0.034 4.034 26 C 0.040 3.960 27 H 0.082 0.918 28 N -0.179 5.179 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.227 0.773 33 H 0.185 0.815 34 H 0.258 0.742 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.134 0.866 42 H 0.091 0.909 43 H 0.107 0.893 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.543 -21.241 7.455 25.770 hybrid contribution -0.325 0.599 -0.251 0.726 sum 12.218 -20.642 7.204 25.046 Atomic orbital electron populations 1.70055 1.08565 1.28784 1.50740 1.25919 0.95767 1.03524 0.93232 0.85618 0.79516 0.77210 0.80050 1.17787 1.20636 1.16219 1.21232 0.90510 0.93726 1.52961 0.95534 1.19887 0.94148 0.74346 0.99634 1.48491 1.34220 1.10138 1.19819 1.23235 0.94259 0.94623 0.96574 1.21726 1.11744 0.97110 1.01778 1.19135 0.97472 0.86419 0.94304 1.41635 1.49385 1.06350 1.31603 1.15873 0.80167 0.80623 0.82941 1.90821 1.44862 1.83258 1.27840 1.46083 1.48955 1.08232 1.29958 1.21964 0.93690 1.00594 0.86735 1.21799 0.98102 0.91869 1.04233 1.21170 0.96072 1.02220 0.95245 1.22002 0.97710 0.94604 0.99020 0.87868 1.24035 0.88421 0.98904 0.91949 1.89300 1.53684 1.28298 1.59961 1.23904 0.90925 0.86282 1.02326 1.20911 0.90510 0.86729 0.97875 0.91809 1.77290 1.26270 0.96762 1.17565 0.91892 0.93652 0.90060 0.77297 0.81501 0.74233 0.89848 0.90247 0.91284 0.87336 0.88514 0.90743 0.86604 0.90913 0.89335 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.96 21.45 0.30 -57.77 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.96 40.67 27.47 68.60 1.88 42.55 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 7 C -0.55 -31.57 9.79 25.60 0.25 -31.32 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 9 C 0.24 11.12 5.33 85.63 0.46 11.58 16 10 N -0.34 -15.57 3.67 -351.82 -1.29 -16.86 16 11 C 0.06 2.28 11.44 83.52 0.96 3.24 16 12 C -0.29 -11.36 9.61 22.11 0.21 -11.15 16 13 C 0.28 11.43 8.11 133.31 1.08 12.51 16 14 N -0.64 -20.14 5.26 -321.22 -1.69 -21.82 16 15 C 0.70 20.86 7.81 179.06 1.40 22.25 16 16 O -0.59 -20.87 11.63 -4.01 -0.05 -20.91 16 17 N -0.60 -12.49 2.97 -821.59 -2.44 -14.93 16 18 C 0.09 1.28 5.70 86.72 0.49 1.77 16 19 C -0.12 -1.06 6.11 30.66 0.19 -0.87 16 20 C -0.11 -0.79 5.29 29.95 0.16 -0.63 16 21 C -0.11 -1.36 3.19 -10.92 -0.03 -1.39 16 22 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 23 C 0.04 0.55 7.11 72.64 0.52 1.06 16 24 O -0.39 -8.58 11.70 -148.98 -1.74 -10.32 16 25 C 0.04 1.01 6.13 72.55 0.44 1.46 16 26 C 0.14 2.87 2.82 45.84 0.13 3.00 16 27 H 0.06 1.48 8.11 -2.38 -0.02 1.46 16 28 N -0.35 -16.27 12.43 -54.43 -0.68 -16.95 16 29 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 30 H 0.05 2.06 7.20 -2.38 -0.02 2.04 16 31 H 0.08 3.24 7.50 -2.39 -0.02 3.22 16 32 H 0.21 5.76 8.06 -2.91 -0.02 5.74 16 33 H 0.17 6.34 5.91 -2.91 -0.02 6.33 16 34 H 0.42 10.98 6.38 -92.71 -0.59 10.39 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 1.14 6.31 -2.39 -0.02 1.13 16 37 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.11 0.50 8.14 -2.39 -0.02 0.49 16 39 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.07 0.50 7.42 -2.39 -0.02 0.48 16 41 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 0.78 7.46 -2.39 -0.02 0.76 16 43 H 0.09 2.46 7.21 -2.39 -0.02 2.44 16 44 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 Total: -1.00 -78.61 348.62 1.39 -77.21 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.38 Total: 27.01 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 6.71 Total: 12.79 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -5.80 Total: -128.33 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.79 Total: -31.23 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.88 Total: 42.55 kcal Total: -78.61 1.39 -77.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476179319.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.213 kcal (2) G-P(sol) polarization free energy of solvation -78.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds