Wall clock time and date at job start Tue Mar 31 2020 12:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 119.99430 * 2 1 4 4 H 1.48500 * 109.46852 * 272.68379 * 3 2 1 5 5 H 1.48501 * 109.47605 * 32.68676 * 3 2 1 6 6 H 1.48508 * 109.47037 * 152.68767 * 3 2 1 7 7 C 1.40019 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00502 * 348.30330 * 7 2 1 9 9 C 1.41548 * 119.99882 * 168.30267 * 7 2 1 10 10 C 1.41167 * 120.99750 * 326.61922 * 9 7 2 11 11 C 1.36586 * 119.12673 * 179.97438 * 10 9 7 12 12 N 1.32068 * 121.26162 * 359.97438 * 11 10 9 13 13 C 1.32500 * 122.22882 * 0.02562 * 12 11 10 14 14 N 1.39454 * 119.64773 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00038 * 5.80202 * 14 13 12 16 16 O 1.21579 * 120.00109 * 4.82518 * 15 14 13 17 17 N 1.34783 * 119.99903 * 184.83136 * 15 14 13 18 18 C 1.46500 * 119.99779 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46868 * 179.97438 * 18 17 15 20 20 N 1.46902 * 109.47082 * 180.02562 * 19 18 17 21 21 C 1.47843 * 111.00121 * 290.84312 * 20 19 18 22 22 C 1.54902 * 104.79606 * 213.63906 * 21 20 19 23 23 C 1.55139 * 101.65687 * 37.06595 * 22 21 20 24 24 H 1.09003 * 110.70223 * 82.72883 * 23 22 21 25 25 O 1.42900 * 110.70905 * 205.96701 * 23 22 21 26 26 C 1.47438 * 110.99964 * 169.99946 * 20 19 18 27 27 C 1.38637 * 120.70050 * 359.97438 * 13 12 11 28 28 H 0.97000 * 120.00529 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.43447 * 359.95551 * 10 9 7 30 30 H 1.07995 * 119.37218 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00240 * 185.79978 * 14 13 12 32 32 H 0.96994 * 119.99810 * 359.97438 * 17 15 14 33 33 H 1.08998 * 109.47554 * 299.99732 * 18 17 15 34 34 H 1.08999 * 109.46909 * 60.00106 * 18 17 15 35 35 H 1.09002 * 109.47331 * 300.00116 * 19 18 17 36 36 H 1.09003 * 109.47202 * 59.99854 * 19 18 17 37 37 H 1.09000 * 110.37185 * 332.46672 * 21 20 19 38 38 H 1.08994 * 110.37159 * 94.80508 * 21 20 19 39 39 H 1.09004 * 110.98512 * 278.97580 * 22 21 20 40 40 H 1.09001 * 111.02476 * 155.17547 * 22 21 20 41 41 H 0.96702 * 113.99833 * 293.60200 * 25 23 22 42 42 H 1.09000 * 109.89013 * 242.66362 * 26 20 19 43 43 H 1.09001 * 109.89148 * 3.85162 * 26 20 19 44 44 H 1.08000 * 120.66217 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4319 2.0793 -1.3986 5 1 1.4683 2.6357 0.7561 6 1 3.5662 1.4246 0.6424 7 6 2.0076 -1.2126 0.0005 8 1 1.4845 -2.1381 0.1906 9 6 3.4010 -1.2253 -0.2480 10 6 3.9907 -0.2945 -1.1304 11 6 5.3392 -0.3410 -1.3419 12 7 6.0973 -1.2376 -0.7372 13 6 5.5987 -2.1349 0.1006 14 7 6.4489 -3.0577 0.7093 15 6 7.7822 -2.9613 0.5370 16 8 8.2496 -2.0209 -0.0756 17 7 8.5973 -3.9077 1.0437 18 6 10.0464 -3.8033 0.8558 19 6 10.7344 -4.9954 1.5239 20 7 12.1876 -4.8905 1.3361 21 6 12.5557 -5.1039 -0.0797 22 6 13.9334 -5.8101 -0.0281 23 6 13.7667 -6.7326 1.2080 24 1 13.2506 -7.6531 0.9351 25 8 15.0357 -7.0194 1.7993 26 6 12.9001 -5.8832 2.1612 27 6 4.2408 -2.1662 0.3785 28 1 -0.4851 0.8400 -0.0004 29 1 3.3834 0.4444 -1.6319 30 1 5.7945 0.3694 -2.0159 31 1 6.0808 -3.7688 1.2568 32 1 8.2243 -4.6578 1.5326 33 1 10.2756 -3.8015 -0.2098 34 1 10.4054 -2.8779 1.3062 35 1 10.5053 -4.9968 2.5896 36 1 10.3754 -5.9211 1.0740 37 1 11.8206 -5.7415 -0.5709 38 1 12.6379 -4.1489 -0.5985 39 1 14.7360 -5.0892 0.1280 40 1 14.1071 -6.3951 -0.9313 41 1 15.6188 -7.5511 1.2404 42 1 13.5356 -5.3750 2.8865 43 1 12.1820 -6.5208 2.6768 44 1 3.8351 -2.8982 1.0611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476947634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:10 Heat of formation + Delta-G solvation = -25.510906 kcal Electronic energy + Delta-G solvation = -25649.426484 eV Core-core repulsion = 21795.122795 eV Total energy + Delta-G solvation = -3854.303689 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.11628 -39.69107 -38.32383 -36.73195 -34.93652 -34.28505 -33.64046 -31.73086 -31.24262 -29.51126 -28.85055 -27.22726 -25.98358 -23.46190 -22.13831 -21.89253 -21.49818 -21.13775 -20.12810 -18.22800 -18.18896 -17.89478 -16.50789 -16.23859 -15.77834 -15.65794 -15.21295 -14.93757 -14.60048 -14.48705 -14.42050 -14.23800 -13.86507 -13.59299 -13.27063 -13.10470 -13.07529 -12.81738 -12.57392 -12.21112 -12.01501 -11.69219 -11.57220 -11.38752 -11.24735 -11.18039 -10.79519 -10.69868 -10.46150 -9.98213 -9.75203 -9.74515 -9.34995 -8.93830 -8.80745 -8.22370 -7.90126 -7.23720 -6.99925 -4.71641 2.39726 2.64077 2.71790 3.10952 3.20067 3.30761 3.46437 3.68575 3.69647 3.95055 4.12473 4.20692 4.43946 4.51925 4.61743 4.62857 4.76022 4.82810 5.00408 5.10975 5.14091 5.30537 5.39836 5.47698 5.58349 5.62762 5.64593 5.74220 5.86401 6.25748 6.33123 6.43090 6.45301 6.47182 6.55326 6.64124 6.93193 7.09749 7.11269 7.17598 7.22189 7.66926 7.95453 8.17514 8.24849 8.44462 8.68615 8.99034 9.46811 10.01741 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.045396 B = 0.001926 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.650769 B =14530.969922 C =14808.338120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.443 4.443 8 H 0.094 0.906 9 C 0.131 3.869 10 C -0.297 4.297 11 C 0.138 3.862 12 N -0.552 5.552 13 C 0.377 3.623 14 N -0.671 5.671 15 C 0.693 3.307 16 O -0.528 6.528 17 N -0.754 5.754 18 C 0.146 3.854 19 C 0.040 3.960 20 N -0.520 5.520 21 C 0.039 3.961 22 C -0.163 4.163 23 C 0.081 3.919 24 H 0.064 0.936 25 O -0.560 6.560 26 C 0.050 3.950 27 C -0.291 4.291 28 H 0.287 0.713 29 H 0.109 0.891 30 H 0.129 0.871 31 H 0.405 0.595 32 H 0.391 0.609 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.380 0.620 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.586 -13.757 3.040 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.133 4.133 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.474 4.474 8 H 0.112 0.888 9 C 0.123 3.877 10 C -0.320 4.320 11 C -0.015 4.015 12 N -0.271 5.271 13 C 0.150 3.850 14 N -0.319 5.319 15 C 0.393 3.607 16 O -0.398 6.398 17 N -0.413 5.413 18 C 0.021 3.979 19 C -0.089 4.089 20 N -0.246 5.246 21 C -0.088 4.088 22 C -0.201 4.201 23 C 0.021 3.979 24 H 0.082 0.918 25 O -0.364 6.364 26 C -0.078 4.078 27 C -0.317 4.317 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.146 0.854 31 H 0.239 0.761 32 H 0.224 0.776 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.228 0.772 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 22.630 -11.952 2.950 25.762 hybrid contribution -1.235 -1.202 -0.077 1.725 sum 21.396 -13.155 2.872 25.280 Atomic orbital electron populations 1.69601 1.08020 1.30433 1.35168 1.26123 0.94811 1.01710 0.90671 0.86274 0.80943 0.79446 0.79293 1.19328 1.21798 1.16818 1.19427 0.90572 0.95699 1.41684 0.88839 1.17700 0.93346 0.89160 0.87543 1.21735 0.96332 1.06966 1.06972 1.21568 0.90250 0.94325 0.95394 1.67291 1.38641 1.07702 1.13462 1.17851 0.86283 0.89198 0.91666 1.42587 1.04553 1.32022 1.52712 1.16007 0.81123 0.83024 0.80587 1.91033 1.74061 1.31796 1.42948 1.45075 1.06585 1.27609 1.61998 1.20956 0.78033 0.98273 1.00617 1.22505 0.87557 0.97235 1.01605 1.63493 1.06095 1.48363 1.06604 1.23078 0.95347 1.00996 0.89412 1.23437 0.98731 0.99594 0.98373 1.23056 0.85226 0.96719 0.92883 0.91814 1.86507 1.27129 1.75826 1.46986 1.22725 0.96369 0.92649 0.96015 1.21218 0.90857 1.09419 1.10252 0.90251 0.87320 0.85387 0.76087 0.77646 0.91748 0.90721 0.89880 0.93899 0.92920 0.89223 0.89468 0.90486 0.77223 0.88980 0.91830 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.04 13.92 55.55 0.77 -20.27 16 2 C 0.09 2.22 5.48 -17.35 -0.10 2.13 16 3 Si 0.91 20.70 24.48 -169.99 -4.16 16.54 16 4 H -0.27 -5.84 6.71 56.52 0.38 -5.46 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.24 -5.81 6.70 56.52 0.38 -5.43 16 7 C -0.44 -11.69 9.66 -37.65 -0.36 -12.05 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.13 3.30 5.09 -106.55 -0.54 2.75 16 10 C -0.30 -7.20 7.07 -39.07 -0.28 -7.47 16 11 C 0.14 3.24 11.10 -18.05 -0.20 3.04 16 12 N -0.55 -13.52 7.90 -12.76 -0.10 -13.62 16 13 C 0.38 8.45 7.41 -154.68 -1.15 7.31 16 14 N -0.67 -11.75 5.40 -15.86 -0.09 -11.84 16 15 C 0.69 12.31 8.52 -86.91 -0.74 11.57 16 16 O -0.53 -11.96 14.64 5.30 0.08 -11.88 16 17 N -0.75 -9.10 5.56 -65.22 -0.36 -9.46 16 18 C 0.15 1.63 5.72 -4.04 -0.02 1.60 16 19 C 0.04 0.31 4.68 -3.82 -0.02 0.30 16 20 N -0.52 -4.36 5.16 -231.26 -1.19 -5.55 16 21 C 0.04 0.29 5.78 -2.30 -0.01 0.28 16 22 C -0.16 -0.98 6.80 -24.60 -0.17 -1.15 16 23 C 0.08 0.51 4.32 -24.91 -0.11 0.40 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 O -0.56 -3.73 13.39 -35.23 -0.47 -4.20 16 26 C 0.05 0.37 6.64 -2.84 -0.02 0.36 16 27 C -0.29 -6.66 9.74 -38.46 -0.37 -7.04 16 28 H 0.29 6.78 8.29 -40.82 -0.34 6.44 16 29 H 0.11 2.57 4.78 -52.49 -0.25 2.32 16 30 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 31 H 0.40 5.29 8.72 -40.82 -0.36 4.94 16 32 H 0.39 3.32 8.49 -40.82 -0.35 2.97 16 33 H 0.06 0.79 7.49 -51.93 -0.39 0.40 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 0.59 8.03 -51.93 -0.42 0.17 16 36 H 0.04 0.30 7.85 -51.93 -0.41 -0.11 16 37 H 0.05 0.37 7.62 -51.93 -0.40 -0.02 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 0.92 9.12 45.56 0.42 1.33 16 42 H 0.09 0.79 8.06 -51.93 -0.42 0.37 16 43 H 0.06 0.41 7.55 -51.93 -0.39 0.02 16 44 H 0.11 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 359.86 15.07 5.42 5.42 Total: -1.00 -34.11 359.86 -9.71 -43.82 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.52 Total: 9.03 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -4.09 Total: 2.02 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: -0.97 Total: -60.74 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.39 Total: -16.08 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.16 Total: 16.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.11 -9.71 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476947634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.305 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds