Wall clock time and date at job start Tue Mar 31 2020 12:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86800 * 119.99430 * 2 1 4 4 H 1.48500 * 109.46852 * 272.68379 * 3 2 1 5 5 H 1.48501 * 109.47605 * 32.68676 * 3 2 1 6 6 H 1.48508 * 109.47037 * 152.68767 * 3 2 1 7 7 C 1.40019 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00502 * 348.30330 * 7 2 1 9 9 C 1.41548 * 119.99882 * 168.30267 * 7 2 1 10 10 C 1.41167 * 120.99750 * 326.61922 * 9 7 2 11 11 C 1.36586 * 119.12673 * 179.97438 * 10 9 7 12 12 N 1.32068 * 121.26162 * 359.97438 * 11 10 9 13 13 C 1.32500 * 122.22882 * 0.02562 * 12 11 10 14 14 N 1.39454 * 119.64773 * 179.97438 * 13 12 11 15 15 C 1.34777 * 120.00038 * 5.80202 * 14 13 12 16 16 O 1.21579 * 120.00109 * 4.82518 * 15 14 13 17 17 N 1.34783 * 119.99903 * 184.83136 * 15 14 13 18 18 C 1.46500 * 119.99779 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.46868 * 179.97438 * 18 17 15 20 20 N 1.46902 * 109.47082 * 180.02562 * 19 18 17 21 21 C 1.47843 * 111.00121 * 290.84312 * 20 19 18 22 22 C 1.54902 * 104.79606 * 213.63906 * 21 20 19 23 23 C 1.55139 * 101.65687 * 37.06595 * 22 21 20 24 24 H 1.09003 * 110.70223 * 82.72883 * 23 22 21 25 25 O 1.42900 * 110.70905 * 205.96701 * 23 22 21 26 26 C 1.47438 * 110.99964 * 169.99946 * 20 19 18 27 27 C 1.38637 * 120.70050 * 359.97438 * 13 12 11 28 28 H 0.97000 * 120.00529 * 0.02562 * 1 2 3 29 29 H 1.07994 * 120.43447 * 359.95551 * 10 9 7 30 30 H 1.07995 * 119.37218 * 180.02562 * 11 10 9 31 31 H 0.97003 * 120.00240 * 185.79978 * 14 13 12 32 32 H 0.96994 * 119.99810 * 359.97438 * 17 15 14 33 33 H 1.08998 * 109.47554 * 299.99732 * 18 17 15 34 34 H 1.08999 * 109.46909 * 60.00106 * 18 17 15 35 35 H 1.09002 * 109.47331 * 300.00116 * 19 18 17 36 36 H 1.09003 * 109.47202 * 59.99854 * 19 18 17 37 37 H 1.09000 * 110.37185 * 332.46672 * 21 20 19 38 38 H 1.08994 * 110.37159 * 94.80508 * 21 20 19 39 39 H 1.09004 * 110.98512 * 278.97580 * 22 21 20 40 40 H 1.09001 * 111.02476 * 155.17547 * 22 21 20 41 41 H 0.96702 * 113.99833 * 293.60200 * 25 23 22 42 42 H 1.09000 * 109.89013 * 242.66362 * 26 20 19 43 43 H 1.09001 * 109.89148 * 3.85162 * 26 20 19 44 44 H 1.08000 * 120.66217 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4319 2.0793 -1.3986 5 1 1.4683 2.6357 0.7561 6 1 3.5662 1.4246 0.6424 7 6 2.0076 -1.2126 0.0005 8 1 1.4845 -2.1381 0.1906 9 6 3.4010 -1.2253 -0.2480 10 6 3.9907 -0.2945 -1.1304 11 6 5.3392 -0.3410 -1.3419 12 7 6.0973 -1.2376 -0.7372 13 6 5.5987 -2.1349 0.1006 14 7 6.4489 -3.0577 0.7093 15 6 7.7822 -2.9613 0.5370 16 8 8.2496 -2.0209 -0.0756 17 7 8.5973 -3.9077 1.0437 18 6 10.0464 -3.8033 0.8558 19 6 10.7344 -4.9954 1.5239 20 7 12.1876 -4.8905 1.3361 21 6 12.5557 -5.1039 -0.0797 22 6 13.9334 -5.8101 -0.0281 23 6 13.7667 -6.7326 1.2080 24 1 13.2506 -7.6531 0.9351 25 8 15.0357 -7.0194 1.7993 26 6 12.9001 -5.8832 2.1612 27 6 4.2408 -2.1662 0.3785 28 1 -0.4851 0.8400 -0.0004 29 1 3.3834 0.4444 -1.6319 30 1 5.7945 0.3694 -2.0159 31 1 6.0808 -3.7688 1.2568 32 1 8.2243 -4.6578 1.5326 33 1 10.2756 -3.8015 -0.2098 34 1 10.4054 -2.8779 1.3062 35 1 10.5053 -4.9968 2.5896 36 1 10.3754 -5.9211 1.0740 37 1 11.8206 -5.7415 -0.5709 38 1 12.6379 -4.1489 -0.5985 39 1 14.7360 -5.0892 0.1280 40 1 14.1071 -6.3951 -0.9313 41 1 15.6188 -7.5511 1.2404 42 1 13.5356 -5.3750 2.8865 43 1 12.1820 -6.5208 2.6768 44 1 3.8351 -2.8982 1.0611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476947634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:10 Heat of formation + Delta-G solvation = -54.182359 kcal Electronic energy + Delta-G solvation = -25650.669771 eV Core-core repulsion = 21795.122795 eV Total energy + Delta-G solvation = -3855.546976 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53826 -40.42382 -39.92076 -37.37028 -36.30624 -35.67565 -35.42055 -33.18022 -32.46784 -30.77445 -29.77742 -28.11393 -27.87045 -24.48026 -23.75074 -23.37030 -22.12377 -21.88833 -21.51903 -19.89232 -19.41310 -18.62946 -17.99566 -17.39047 -17.04965 -16.85704 -16.40610 -16.13298 -15.98609 -15.84960 -15.50195 -15.16300 -14.93785 -14.89347 -14.65056 -14.59206 -14.30259 -13.96122 -13.61783 -13.38534 -12.98054 -12.72046 -12.68766 -12.64859 -12.56814 -12.37556 -12.10585 -11.79662 -11.71910 -11.47045 -11.35819 -11.19194 -10.91878 -10.15928 -10.09781 -9.72196 -9.39512 -8.95574 -8.92375 -6.70921 0.59559 0.76643 1.29200 1.40727 1.48931 1.49926 2.10887 2.21358 2.71713 2.75465 3.22040 3.28943 3.52699 3.64816 3.72031 3.88644 4.01880 4.03498 4.12904 4.29782 4.44797 4.46185 4.52955 4.57168 4.62558 4.66426 4.76831 4.82649 4.87753 4.91909 4.93927 5.05335 5.15397 5.21515 5.27122 5.42259 5.43424 5.72998 5.86376 5.89891 5.97064 6.12909 6.29800 6.52149 6.71592 6.84749 6.94449 7.53244 7.77049 8.13861 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.045396 B = 0.001926 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.650769 B =14530.969922 C =14808.338120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.056 3.944 3 Si 0.963 3.037 4 H -0.253 1.253 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.470 4.470 8 H 0.070 0.930 9 C 0.116 3.884 10 C -0.306 4.306 11 C 0.133 3.867 12 N -0.571 5.571 13 C 0.377 3.623 14 N -0.658 5.658 15 C 0.691 3.309 16 O -0.579 6.579 17 N -0.727 5.727 18 C 0.150 3.850 19 C 0.051 3.949 20 N -0.538 5.538 21 C 0.036 3.964 22 C -0.157 4.157 23 C 0.085 3.915 24 H 0.081 0.919 25 O -0.578 6.578 26 C 0.048 3.952 27 C -0.293 4.293 28 H 0.297 0.703 29 H 0.113 0.887 30 H 0.155 0.845 31 H 0.426 0.574 32 H 0.413 0.587 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.398 0.602 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.096 -14.987 3.394 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.161 4.161 3 Si 0.787 3.213 4 H -0.178 1.178 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.501 4.501 8 H 0.088 0.912 9 C 0.107 3.893 10 C -0.329 4.329 11 C -0.020 4.020 12 N -0.290 5.290 13 C 0.148 3.852 14 N -0.308 5.308 15 C 0.390 3.610 16 O -0.454 6.454 17 N -0.386 5.386 18 C 0.025 3.975 19 C -0.077 4.077 20 N -0.264 5.264 21 C -0.092 4.092 22 C -0.195 4.195 23 C 0.025 3.975 24 H 0.098 0.902 25 O -0.386 6.386 26 C -0.080 4.080 27 C -0.319 4.319 28 H 0.108 0.892 29 H 0.131 0.869 30 H 0.172 0.828 31 H 0.265 0.735 32 H 0.250 0.750 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.114 0.886 41 H 0.248 0.752 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 24.149 -13.274 3.343 27.759 hybrid contribution -1.548 -0.933 -0.164 1.815 sum 22.602 -14.207 3.179 26.885 Atomic orbital electron populations 1.69614 1.08882 1.31715 1.36321 1.26695 0.95367 1.03850 0.90188 0.85528 0.78992 0.76808 0.79969 1.17791 1.20264 1.18693 1.19416 0.91405 0.95387 1.43932 0.91226 1.17895 0.93177 0.90236 0.87969 1.21829 0.96824 1.07139 1.07140 1.21996 0.90054 0.94522 0.95419 1.67420 1.39280 1.08303 1.14032 1.18054 0.86852 0.89226 0.91049 1.42409 1.04353 1.31648 1.52369 1.16198 0.81207 0.83278 0.80310 1.91003 1.74890 1.34157 1.45308 1.44793 1.06507 1.26720 1.60557 1.20968 0.77251 0.99120 1.00164 1.22386 0.87182 0.96102 1.02056 1.63389 1.06331 1.49408 1.07240 1.23091 0.96446 1.00667 0.88948 1.23393 0.97402 0.99399 0.99284 1.23038 0.85143 0.97096 0.92235 0.90165 1.86464 1.27654 1.76419 1.48031 1.22715 0.96659 0.92637 0.95953 1.21415 0.91054 1.09238 1.10191 0.89246 0.86892 0.82818 0.73517 0.75024 0.92932 0.92804 0.88624 0.92053 0.92207 0.90578 0.90659 0.88638 0.75192 0.90611 0.90508 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.10 13.92 21.84 0.30 -43.80 16 2 C 0.06 2.88 5.48 85.29 0.47 3.35 16 3 Si 0.96 42.19 24.48 68.60 1.68 43.87 16 4 H -0.25 -10.41 6.71 99.48 0.67 -9.74 16 5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.26 -12.19 6.70 99.48 0.67 -11.52 16 7 C -0.47 -25.26 9.66 23.52 0.23 -25.04 16 8 H 0.07 3.95 8.06 -2.91 -0.02 3.92 16 9 C 0.12 5.82 5.09 -21.11 -0.11 5.71 16 10 C -0.31 -14.65 7.07 22.60 0.16 -14.49 16 11 C 0.13 6.13 11.10 84.27 0.94 7.06 16 12 N -0.57 -27.44 7.90 -194.28 -1.53 -28.97 16 13 C 0.38 16.43 7.41 132.76 0.98 17.41 16 14 N -0.66 -21.78 5.40 -322.37 -1.74 -23.52 16 15 C 0.69 23.46 8.52 179.05 1.52 24.99 16 16 O -0.58 -25.94 14.64 -3.96 -0.06 -26.00 16 17 N -0.73 -15.90 5.56 -478.53 -2.66 -18.56 16 18 C 0.15 3.13 5.72 86.38 0.49 3.62 16 19 C 0.05 0.68 4.68 86.30 0.40 1.09 16 20 N -0.54 -8.19 5.16 -885.56 -4.57 -12.76 16 21 C 0.04 0.49 5.78 86.77 0.50 0.99 16 22 C -0.16 -1.62 6.80 31.98 0.22 -1.40 16 23 C 0.08 0.88 4.32 31.77 0.14 1.02 16 24 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 25 O -0.58 -6.66 13.39 -148.98 -1.99 -8.66 16 26 C 0.05 0.63 6.64 86.65 0.58 1.20 16 27 C -0.29 -13.18 9.74 23.00 0.22 -12.95 16 28 H 0.30 14.01 8.29 -92.71 -0.77 13.24 16 29 H 0.11 5.23 4.78 -2.91 -0.01 5.21 16 30 H 0.15 6.09 8.06 -2.91 -0.02 6.06 16 31 H 0.43 9.99 8.72 -92.71 -0.81 9.18 16 32 H 0.41 5.59 8.49 -92.71 -0.79 4.80 16 33 H 0.05 1.25 7.49 -2.39 -0.02 1.23 16 34 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.10 1.07 8.03 -2.39 -0.02 1.05 16 36 H 0.06 0.63 7.85 -2.39 -0.02 0.61 16 37 H 0.06 0.72 7.62 -2.39 -0.02 0.70 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.40 1.12 9.12 -74.06 -0.68 0.45 16 42 H 0.08 1.23 8.06 -2.39 -0.02 1.22 16 43 H 0.08 0.78 7.55 -2.39 -0.02 0.76 16 44 H 0.13 5.17 8.06 -2.91 -0.02 5.14 16 Total: -1.00 -74.36 359.86 -5.12 -79.48 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: -1.29 Total: 26.38 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.74 Total: 12.55 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -10.20 Total: -127.62 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -2.05 Total: -34.65 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.68 Total: 43.87 kcal Total: -74.36 -5.12 -79.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476947634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.295 kcal (2) G-P(sol) polarization free energy of solvation -74.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds