Wall clock time and date at job start Tue Mar 31 2020 12:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31786 * 119.09257 * 2 1 4 4 C 1.32482 * 120.96570 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.41637 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.17484 * 359.72914 * 4 3 2 7 7 C 1.50704 * 120.82727 * 180.27215 * 6 4 3 8 8 C 1.50704 * 109.47142 * 270.27113 * 7 6 4 9 9 O 1.21279 * 120.00003 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99789 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47215 * 179.97438 * 11 10 8 13 13 C 1.30998 * 119.99615 * 127.15690 * 12 11 10 14 14 C 1.50697 * 120.00243 * 7.56023 * 13 12 11 15 15 N 1.46507 * 109.46938 * 127.00730 * 14 13 12 16 16 C 1.36935 * 119.99834 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00386 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99910 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00295 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99889 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47175 * 90.00056 * 20 18 16 22 22 H 1.48501 * 109.46867 * 210.00307 * 20 18 16 23 23 H 1.48492 * 109.47061 * 329.99797 * 20 18 16 24 24 C 1.39374 * 118.34997 * 0.53484 * 6 4 3 25 25 O 1.35518 * 120.51328 * 179.73744 * 24 6 4 26 26 N 1.31769 * 119.09186 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46956 * 269.96901 * 1 2 3 28 28 H 1.08990 * 109.47515 * 29.97087 * 1 2 3 29 29 H 1.09010 * 109.47233 * 149.97815 * 1 2 3 30 30 H 1.08999 * 109.47425 * 89.99885 * 5 4 3 31 31 H 1.08994 * 109.47246 * 210.00227 * 5 4 3 32 32 H 1.09008 * 109.46714 * 329.99983 * 5 4 3 33 33 H 1.09002 * 109.47165 * 30.27175 * 7 6 4 34 34 H 1.08997 * 109.47520 * 150.26933 * 7 6 4 35 35 H 0.96996 * 120.00096 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.47350 * 300.00397 * 11 10 8 37 37 H 1.09006 * 109.46764 * 59.99874 * 11 10 8 38 38 H 1.07989 * 120.00174 * 307.16320 * 12 11 10 39 39 H 1.08007 * 120.00007 * 187.56393 * 13 12 11 40 40 H 1.09006 * 109.47340 * 247.00452 * 14 13 12 41 41 H 1.08992 * 109.47528 * 7.00867 * 14 13 12 42 42 H 0.97002 * 120.00063 * 0.02562 * 15 14 13 43 43 H 0.96997 * 120.00263 * 179.97438 * 19 18 16 44 44 H 0.96706 * 113.99682 * 269.72057 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1516 0.0000 4 6 3.4719 1.1949 -0.0005 5 6 4.1920 2.5187 -0.0011 6 6 4.1848 0.0106 0.0047 7 6 5.6918 0.0164 0.0104 8 6 6.1996 0.0222 -1.4085 9 8 5.4150 0.0211 -2.3333 10 7 7.5256 0.0285 -1.6496 11 6 8.0192 0.0335 -3.0290 12 6 9.5262 0.0407 -3.0232 13 6 10.1880 -0.8590 -3.7077 14 6 9.4523 -1.7927 -4.6340 15 7 10.0587 -1.7367 -5.9665 16 6 9.5542 -2.5054 -6.9812 17 1 8.7095 -3.1534 -6.7991 18 6 10.1284 -2.4520 -8.2438 19 7 9.6438 -3.1913 -9.2190 20 14 11.5890 -1.3309 -8.5589 21 1 12.8481 -2.0707 -8.2897 22 1 11.5717 -0.8816 -9.9742 23 1 11.5081 -0.1491 -7.6635 24 6 3.4754 -1.1890 -0.0012 25 8 4.1300 -2.3756 -0.0018 26 7 2.1477 -1.1514 -0.0005 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3634 0.8901 -0.5133 29 1 -0.3634 -0.8899 -0.5142 30 1 4.3660 2.8382 1.0264 31 1 5.1471 2.4126 -0.5153 32 1 3.5835 3.2630 -0.5149 33 1 6.0498 0.9064 0.5280 34 1 6.0567 -0.8734 0.5233 35 1 8.1531 0.0289 -0.9100 36 1 7.6617 -0.8570 -3.5461 37 1 7.6539 0.9230 -3.5423 38 1 10.0604 0.7875 -2.4548 39 1 11.2610 -0.9317 -3.6081 40 1 9.5148 -2.8105 -4.2489 41 1 8.4067 -1.4919 -4.6978 42 1 10.8176 -1.1551 -6.1300 43 1 10.0448 -3.1537 -10.1014 44 1 4.3196 -2.7197 -0.8855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497749288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:23 Heat of formation + Delta-G solvation = 5.665474 kcal Electronic energy + Delta-G solvation = -25860.415188 eV Core-core repulsion = 22007.463408 eV Total energy + Delta-G solvation = -3852.951780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72708 -39.78782 -38.00784 -36.84034 -35.28749 -34.70012 -33.17499 -32.89471 -31.10997 -30.65998 -29.41341 -27.54723 -26.11416 -24.85686 -23.37504 -22.20827 -22.11143 -20.66320 -19.13993 -19.00581 -18.38043 -17.65936 -17.01751 -16.45374 -16.16862 -15.86886 -15.14659 -15.06409 -14.65824 -14.46441 -14.21892 -13.94055 -13.79741 -13.61176 -13.52825 -13.22721 -13.06967 -12.80456 -12.74183 -12.70445 -12.44038 -12.33164 -12.15791 -11.98150 -11.28093 -10.95453 -10.90017 -10.59777 -10.57666 -10.26939 -10.16254 -9.63882 -9.58080 -9.42844 -9.31331 -9.14544 -8.73723 -7.27059 -5.80168 -3.16871 0.48166 0.69788 2.05631 2.40187 2.94113 3.15796 3.34864 3.37125 3.42724 3.43598 3.59005 3.95889 4.24422 4.39144 4.55793 4.56955 4.73944 4.84112 4.88607 5.07782 5.09308 5.10777 5.13848 5.22273 5.23856 5.43208 5.46664 5.49759 5.54288 5.57860 5.65427 5.71421 5.98284 6.03410 6.13588 6.36397 6.40135 6.65250 6.68746 6.94334 7.04485 7.29498 7.80107 7.94730 8.00672 8.38213 9.16374 9.88248 10.07474 11.37929 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.002267 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.104067 B =12350.230577 C =12915.136126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.343 3.657 3 N -0.526 5.526 4 C 0.205 3.795 5 C -0.109 4.109 6 C -0.193 4.193 7 C -0.092 4.092 8 C 0.510 3.490 9 O -0.534 6.534 10 N -0.721 5.721 11 C 0.138 3.862 12 C -0.195 4.195 13 C -0.117 4.117 14 C 0.166 3.834 15 N -0.751 5.751 16 C -0.248 4.248 17 H 0.091 0.909 18 C 0.005 3.995 19 N -0.932 5.932 20 Si 0.886 3.114 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.381 3.619 25 O -0.477 6.477 26 N -0.542 5.542 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.400 0.600 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.037 0.963 41 H 0.043 0.957 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.146 10.892 25.936 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 N -0.242 5.242 4 C 0.060 3.940 5 C -0.166 4.166 6 C -0.199 4.199 7 C -0.133 4.133 8 C 0.296 3.704 9 O -0.410 6.410 10 N -0.373 5.373 11 C 0.016 3.984 12 C -0.214 4.214 13 C -0.136 4.136 14 C 0.040 3.960 15 N -0.397 5.397 16 C -0.377 4.377 17 H 0.109 0.891 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.716 3.284 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.203 1.203 24 C 0.193 3.807 25 O -0.285 6.285 26 N -0.268 5.268 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.234 0.766 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -11.816 10.712 25.692 30.240 hybrid contribution 2.546 0.511 -0.529 2.650 sum -9.270 11.224 25.164 29.071 Atomic orbital electron populations 1.20600 0.85275 1.04485 1.03967 1.23039 0.97963 0.82124 0.89283 1.68117 1.09189 1.30252 1.16683 1.21447 0.89157 0.95215 0.88171 1.20827 1.00077 0.92149 1.03573 1.20878 0.96902 0.93917 1.08193 1.20470 0.91044 1.06272 0.95550 1.20452 0.82446 0.76657 0.90887 1.90772 1.55496 1.48873 1.45865 1.46011 1.06577 1.75278 1.09429 1.20596 0.91786 1.03822 0.82153 1.22619 0.94458 0.99862 1.04461 1.23331 1.00291 0.94913 0.95102 1.19973 0.95417 0.95952 0.84669 1.42615 1.38106 1.52412 1.06523 1.19055 1.12837 1.17493 0.88343 0.89133 1.24687 0.99200 0.99448 0.95747 1.69702 1.43223 1.43072 1.01955 0.86523 0.83586 0.80991 0.77290 1.21013 1.21627 1.20310 1.19168 0.86681 0.85359 0.89464 1.84607 1.74638 1.34449 1.34831 1.67809 1.09536 1.31868 1.17542 0.89469 0.89305 0.89400 0.89339 0.90157 0.89380 0.87268 0.86790 0.76559 0.89149 0.90951 0.86900 0.86852 0.94531 0.93999 0.80533 0.92960 0.72646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.32 36.01 0.37 -0.28 16 2 C 0.34 3.97 7.64 -157.22 -1.20 2.77 16 3 N -0.53 -6.17 10.27 -7.05 -0.07 -6.24 16 4 C 0.21 2.18 6.82 -82.31 -0.56 1.62 16 5 C -0.11 -0.79 9.44 36.01 0.34 -0.45 16 6 C -0.19 -2.02 4.42 -104.20 -0.46 -2.48 16 7 C -0.09 -0.69 4.99 -29.03 -0.14 -0.84 16 8 C 0.51 5.41 7.49 -10.98 -0.08 5.33 16 9 O -0.53 -8.21 16.03 5.56 0.09 -8.13 16 10 N -0.72 -6.61 5.55 -61.47 -0.34 -6.95 16 11 C 0.14 1.70 5.76 -5.19 -0.03 1.67 16 12 C -0.19 -2.23 9.63 -36.03 -0.35 -2.58 16 13 C -0.12 -1.65 9.63 -36.03 -0.35 -2.00 16 14 C 0.17 3.12 6.35 -5.19 -0.03 3.08 16 15 N -0.75 -17.81 5.40 -61.08 -0.33 -18.14 16 16 C -0.25 -7.06 10.47 -15.06 -0.16 -7.22 16 17 H 0.09 2.76 8.06 -52.48 -0.42 2.34 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 19 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 20 Si 0.89 22.04 27.73 -169.99 -4.71 17.33 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 24 C 0.38 4.54 7.81 -16.70 -0.13 4.41 16 25 O -0.48 -4.89 12.75 -18.25 -0.23 -5.12 16 26 N -0.54 -6.95 10.36 -10.78 -0.11 -7.06 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.54 6.54 -51.93 -0.34 0.20 16 32 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.11 0.50 6.84 -51.93 -0.36 0.14 16 34 H 0.11 0.69 7.63 -51.93 -0.40 0.30 16 35 H 0.40 2.36 8.46 -40.82 -0.35 2.02 16 36 H 0.09 1.34 5.30 -51.93 -0.28 1.07 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.04 0.81 5.29 -51.93 -0.27 0.53 16 42 H 0.36 8.32 5.52 -40.82 -0.23 8.10 16 43 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 44 H 0.41 3.06 9.06 45.56 0.41 3.47 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -37.64 373.19 -7.39 -45.03 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.20 Total: 9.21 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -2.88 Total: 3.10 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -0.08 Total: -67.04 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.14 Total: -13.25 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.64 -7.39 -45.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497749288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.695 kcal (2) G-P(sol) polarization free energy of solvation -37.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds