Wall clock time and date at job start Tue Mar 31 2020 12:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31786 * 119.09257 * 2 1 4 4 C 1.32482 * 120.96570 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.41637 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.17484 * 359.72914 * 4 3 2 7 7 C 1.50704 * 120.82727 * 180.27215 * 6 4 3 8 8 C 1.50704 * 109.47142 * 270.27113 * 7 6 4 9 9 O 1.21279 * 120.00003 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99821 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99789 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47215 * 179.97438 * 11 10 8 13 13 C 1.30998 * 119.99615 * 127.15690 * 12 11 10 14 14 C 1.50697 * 120.00243 * 7.56023 * 13 12 11 15 15 N 1.46507 * 109.46938 * 127.00730 * 14 13 12 16 16 C 1.36935 * 119.99834 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00386 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99910 * 179.97438 * 16 15 14 19 19 N 1.31621 * 120.00295 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99889 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47175 * 90.00056 * 20 18 16 22 22 H 1.48501 * 109.46867 * 210.00307 * 20 18 16 23 23 H 1.48492 * 109.47061 * 329.99797 * 20 18 16 24 24 C 1.39374 * 118.34997 * 0.53484 * 6 4 3 25 25 O 1.35518 * 120.51328 * 179.73744 * 24 6 4 26 26 N 1.31769 * 119.09186 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46956 * 269.96901 * 1 2 3 28 28 H 1.08990 * 109.47515 * 29.97087 * 1 2 3 29 29 H 1.09010 * 109.47233 * 149.97815 * 1 2 3 30 30 H 1.08999 * 109.47425 * 89.99885 * 5 4 3 31 31 H 1.08994 * 109.47246 * 210.00227 * 5 4 3 32 32 H 1.09008 * 109.46714 * 329.99983 * 5 4 3 33 33 H 1.09002 * 109.47165 * 30.27175 * 7 6 4 34 34 H 1.08997 * 109.47520 * 150.26933 * 7 6 4 35 35 H 0.96996 * 120.00096 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.47350 * 300.00397 * 11 10 8 37 37 H 1.09006 * 109.46764 * 59.99874 * 11 10 8 38 38 H 1.07989 * 120.00174 * 307.16320 * 12 11 10 39 39 H 1.08007 * 120.00007 * 187.56393 * 13 12 11 40 40 H 1.09006 * 109.47340 * 247.00452 * 14 13 12 41 41 H 1.08992 * 109.47528 * 7.00867 * 14 13 12 42 42 H 0.97002 * 120.00063 * 0.02562 * 15 14 13 43 43 H 0.96997 * 120.00263 * 179.97438 * 19 18 16 44 44 H 0.96706 * 113.99682 * 269.72057 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1478 1.1516 0.0000 4 6 3.4719 1.1949 -0.0005 5 6 4.1920 2.5187 -0.0011 6 6 4.1848 0.0106 0.0047 7 6 5.6918 0.0164 0.0104 8 6 6.1996 0.0222 -1.4085 9 8 5.4150 0.0211 -2.3333 10 7 7.5256 0.0285 -1.6496 11 6 8.0192 0.0335 -3.0290 12 6 9.5262 0.0407 -3.0232 13 6 10.1880 -0.8590 -3.7077 14 6 9.4523 -1.7927 -4.6340 15 7 10.0587 -1.7367 -5.9665 16 6 9.5542 -2.5054 -6.9812 17 1 8.7095 -3.1534 -6.7991 18 6 10.1284 -2.4520 -8.2438 19 7 9.6438 -3.1913 -9.2190 20 14 11.5890 -1.3309 -8.5589 21 1 12.8481 -2.0707 -8.2897 22 1 11.5717 -0.8816 -9.9742 23 1 11.5081 -0.1491 -7.6635 24 6 3.4754 -1.1890 -0.0012 25 8 4.1300 -2.3756 -0.0018 26 7 2.1477 -1.1514 -0.0005 27 1 -0.3633 -0.0006 1.0277 28 1 -0.3634 0.8901 -0.5133 29 1 -0.3634 -0.8899 -0.5142 30 1 4.3660 2.8382 1.0264 31 1 5.1471 2.4126 -0.5153 32 1 3.5835 3.2630 -0.5149 33 1 6.0498 0.9064 0.5280 34 1 6.0567 -0.8734 0.5233 35 1 8.1531 0.0289 -0.9100 36 1 7.6617 -0.8570 -3.5461 37 1 7.6539 0.9230 -3.5423 38 1 10.0604 0.7875 -2.4548 39 1 11.2610 -0.9317 -3.6081 40 1 9.5148 -2.8105 -4.2489 41 1 8.4067 -1.4919 -4.6978 42 1 10.8176 -1.1551 -6.1300 43 1 10.0448 -3.1537 -10.1014 44 1 4.3196 -2.7197 -0.8855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497749288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:22 Heat of formation + Delta-G solvation = -26.802088 kcal Electronic energy + Delta-G solvation = -25861.823087 eV Core-core repulsion = 22007.463408 eV Total energy + Delta-G solvation = -3854.359679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.51101 -40.68823 -38.79608 -38.09517 -36.27659 -35.93885 -34.45783 -33.89027 -32.84855 -31.52810 -30.04557 -28.64360 -27.36179 -25.97808 -24.15867 -24.04893 -22.96853 -21.54092 -20.51652 -19.86309 -19.28178 -19.10319 -17.96972 -17.58875 -16.98608 -16.85390 -16.48670 -15.97493 -15.89804 -15.54892 -15.38069 -14.96741 -14.93796 -14.65133 -14.32705 -14.27995 -14.19942 -14.15634 -13.74257 -13.47168 -13.36479 -13.06605 -13.05563 -13.03371 -12.76555 -12.73748 -12.21602 -11.89074 -11.73637 -11.64653 -11.39028 -11.20966 -11.06541 -10.43006 -10.34764 -10.12582 -9.95077 -9.28342 -8.06214 -5.41283 -0.31774 -0.10464 1.03682 1.36470 1.41499 1.49127 1.57728 2.15995 2.34308 2.46529 2.64578 2.89961 3.24847 3.25442 3.52482 3.71757 3.74857 3.84310 3.89913 4.08004 4.13611 4.21247 4.31962 4.53546 4.54293 4.60992 4.63395 4.65171 4.69719 4.81648 4.85632 4.88624 4.89417 5.06734 5.10438 5.36306 5.36954 5.56774 5.68975 5.85622 5.86649 6.17453 6.30854 6.55531 6.99000 7.03959 7.24085 7.78302 7.99445 9.15275 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018951 B = 0.002267 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.104067 B =12350.230577 C =12915.136126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.326 3.674 3 N -0.541 5.541 4 C 0.192 3.808 5 C -0.106 4.106 6 C -0.199 4.199 7 C -0.081 4.081 8 C 0.512 3.488 9 O -0.587 6.587 10 N -0.703 5.703 11 C 0.137 3.863 12 C -0.152 4.152 13 C -0.141 4.141 14 C 0.162 3.838 15 N -0.754 5.754 16 C -0.242 4.242 17 H 0.051 0.949 18 C -0.067 4.067 19 N -0.984 5.984 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.295 1.295 23 H -0.248 1.248 24 C 0.360 3.640 25 O -0.480 6.480 26 N -0.570 5.570 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.421 0.579 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.157 0.843 39 H 0.134 0.866 40 H 0.028 0.972 41 H 0.033 0.967 42 H 0.369 0.631 43 H 0.259 0.741 44 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 13.614 28.600 32.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.059 3.941 3 N -0.259 5.259 4 C 0.048 3.952 5 C -0.163 4.163 6 C -0.205 4.205 7 C -0.121 4.121 8 C 0.299 3.701 9 O -0.467 6.467 10 N -0.356 5.356 11 C 0.013 3.987 12 C -0.171 4.171 13 C -0.160 4.160 14 C 0.037 3.963 15 N -0.400 5.400 16 C -0.373 4.373 17 H 0.069 0.931 18 C -0.258 4.258 19 N -0.634 5.634 20 Si 0.789 3.211 21 H -0.199 1.199 22 H -0.222 1.222 23 H -0.173 1.173 24 C 0.173 3.827 25 O -0.289 6.289 26 N -0.296 5.296 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.166 0.834 34 H 0.151 0.849 35 H 0.259 0.741 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.175 0.825 39 H 0.152 0.848 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.203 0.797 43 H 0.068 0.932 44 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -9.582 13.444 28.445 32.889 hybrid contribution 1.708 -0.379 -1.276 2.166 sum -7.874 13.065 27.169 31.158 Atomic orbital electron populations 1.20708 0.83175 1.04989 1.05165 1.23712 0.99451 0.81971 0.88940 1.68198 1.10023 1.30270 1.17389 1.22103 0.89151 0.96746 0.87249 1.20940 0.99771 0.90194 1.05405 1.21133 0.98463 0.93252 1.07679 1.20527 0.89006 1.09044 0.93531 1.20976 0.82239 0.75243 0.91599 1.90766 1.56872 1.51340 1.47770 1.45765 1.06673 1.74371 1.08800 1.20394 0.92769 1.01881 0.83607 1.22852 0.93458 0.98560 1.02202 1.23062 1.01046 0.95630 0.96292 1.20065 0.95568 0.97102 0.83593 1.42607 1.38361 1.51689 1.07309 1.19025 1.11419 1.16990 0.89885 0.93079 1.25633 1.03057 1.01754 0.95399 1.69903 1.45477 1.45538 1.02525 0.85293 0.79192 0.79498 0.77097 1.19912 1.22215 1.17261 1.19530 0.86915 0.86287 0.89944 1.84572 1.74450 1.34269 1.35657 1.67832 1.10355 1.32688 1.18771 0.87805 0.88415 0.89182 0.86464 0.89394 0.89752 0.83377 0.84901 0.74069 0.92398 0.91875 0.82523 0.84825 0.95425 0.94896 0.79750 0.93189 0.71692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.32 71.24 0.74 -0.51 16 2 C 0.33 7.63 7.64 138.76 1.06 8.69 16 3 N -0.54 -12.55 10.27 -176.22 -1.81 -14.36 16 4 C 0.19 3.87 6.82 42.46 0.29 4.16 16 5 C -0.11 -1.27 9.44 71.24 0.67 -0.60 16 6 C -0.20 -3.96 4.42 -19.59 -0.09 -4.05 16 7 C -0.08 -0.98 4.99 29.10 0.15 -0.84 16 8 C 0.51 9.93 7.49 87.66 0.66 10.58 16 9 O -0.59 -18.09 16.03 -3.03 -0.05 -18.14 16 10 N -0.70 -10.86 5.55 -466.78 -2.59 -13.44 16 11 C 0.14 3.11 5.76 85.63 0.49 3.61 16 12 C -0.15 -2.88 9.63 25.65 0.25 -2.63 16 13 C -0.14 -3.58 9.63 25.65 0.25 -3.33 16 14 C 0.16 6.06 6.35 85.63 0.54 6.60 16 15 N -0.75 -35.48 5.40 -347.17 -1.87 -37.36 16 16 C -0.24 -14.21 10.47 84.03 0.88 -13.33 16 17 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.98 -64.20 13.97 21.65 0.30 -63.90 16 20 Si 0.96 45.35 27.73 68.60 1.90 47.25 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 22 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.25 -10.40 6.52 99.48 0.65 -9.75 16 24 C 0.36 8.62 7.81 84.82 0.66 9.28 16 25 O -0.48 -9.87 12.75 -88.21 -1.12 -10.99 16 26 N -0.57 -14.97 10.36 -300.69 -3.12 -18.08 16 27 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.92 6.54 -2.39 -0.02 0.90 16 32 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.15 0.66 6.84 -2.39 -0.02 0.64 16 34 H 0.13 1.18 7.63 -2.39 -0.02 1.16 16 35 H 0.42 3.06 8.46 -92.71 -0.78 2.28 16 36 H 0.06 1.74 5.30 -2.39 -0.01 1.72 16 37 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.16 1.78 8.06 -2.92 -0.02 1.75 16 39 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.03 1.31 5.29 -2.39 -0.01 1.30 16 42 H 0.37 16.17 5.52 -92.71 -0.51 15.66 16 43 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.42 6.54 9.06 -74.05 -0.67 5.87 16 Total: -1.00 -86.64 373.19 -2.30 -88.94 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.96 Total: 25.99 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 7.01 Total: 14.09 kcal Atomic # 7 Polarization: -138.06 SS G_CDS: -9.09 Total: -147.15 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.17 Total: -29.13 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.90 Total: 47.25 kcal Total: -86.64 -2.30 -88.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497749288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.142 kcal (2) G-P(sol) polarization free energy of solvation -86.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds