Wall clock time and date at job start Tue Mar 31 2020 12:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31787 * 119.09552 * 2 1 4 4 C 1.32491 * 120.96431 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.41061 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.17927 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.82707 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47326 * 269.97824 * 7 6 4 9 9 O 1.21282 * 119.99834 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00325 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00219 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47220 * 180.02562 * 11 10 8 13 13 C 1.31002 * 119.99665 * 124.99650 * 12 11 10 14 14 C 1.50709 * 119.99512 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.46829 * 125.00034 * 14 13 12 16 16 C 1.36935 * 119.99964 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99828 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00302 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99710 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47299 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46695 * 120.00067 * 20 18 16 23 23 H 1.48502 * 109.47054 * 240.00102 * 20 18 16 24 24 C 1.39375 * 118.35061 * 359.97438 * 6 4 3 25 25 O 1.35512 * 120.51345 * 179.97438 * 24 6 4 26 26 N 1.31767 * 119.09380 * 180.23380 * 2 1 3 27 27 H 1.09002 * 109.46951 * 89.99858 * 1 2 3 28 28 H 1.09002 * 109.46963 * 209.99771 * 1 2 3 29 29 H 1.09000 * 109.47022 * 330.00107 * 1 2 3 30 30 H 1.08998 * 109.47148 * 269.97820 * 5 4 3 31 31 H 1.09002 * 109.47268 * 29.97754 * 5 4 3 32 32 H 1.08995 * 109.47643 * 149.97612 * 5 4 3 33 33 H 1.09003 * 109.46834 * 29.97656 * 7 6 4 34 34 H 1.09004 * 109.47417 * 149.97457 * 7 6 4 35 35 H 0.97000 * 120.00090 * 359.97438 * 10 8 7 36 36 H 1.09010 * 109.46757 * 300.00066 * 11 10 8 37 37 H 1.08997 * 109.46970 * 59.99768 * 11 10 8 38 38 H 1.07994 * 119.99857 * 305.00256 * 12 11 10 39 39 H 1.07991 * 120.00511 * 0.02562 * 13 12 11 40 40 H 1.09000 * 109.46690 * 245.00000 * 14 13 12 41 41 H 1.09004 * 109.47126 * 5.00334 * 14 13 12 42 42 H 0.97003 * 120.00287 * 359.97438 * 15 14 13 43 43 H 0.96998 * 119.99989 * 179.97438 * 19 18 16 44 44 H 0.96700 * 114.00230 * 90.00290 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1478 1.1516 0.0000 4 6 3.4720 1.1948 0.0005 5 6 4.1920 2.5186 0.0011 6 6 4.1849 0.0105 0.0005 7 6 5.6919 0.0163 0.0017 8 6 6.1953 0.0184 -1.4187 9 8 5.4079 0.0149 -2.3412 10 7 7.5205 0.0240 -1.6640 11 6 8.0099 0.0266 -3.0449 12 6 9.5169 0.0323 -3.0438 13 6 10.1759 -0.8943 -3.6944 14 6 11.6829 -0.8883 -3.6937 15 7 12.1762 -2.1843 -3.2214 16 6 13.5234 -2.4143 -3.1358 17 1 14.2222 -1.6400 -3.4160 18 6 13.9908 -3.6425 -2.6887 19 7 13.1391 -4.5859 -2.3467 20 14 15.8286 -3.9564 -2.5726 21 1 16.5665 -2.7448 -3.0116 22 1 16.1888 -4.2727 -1.1670 23 1 16.1914 -5.1012 -3.4462 24 6 3.4754 -1.1891 0.0005 25 8 4.1300 -2.3757 0.0000 26 7 2.1476 -1.1514 -0.0047 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 4.3663 2.8379 -1.0264 31 1 3.5834 3.2630 0.5145 32 1 5.1470 2.4127 0.5156 33 1 6.0514 0.9077 0.5158 34 1 6.0583 -0.8723 0.5158 35 1 8.1503 0.0271 -0.9263 36 1 7.6507 -0.8648 -3.5593 37 1 7.6432 0.9152 -3.5587 38 1 10.0536 0.8001 -2.5065 39 1 9.6392 -1.6620 -4.2320 40 1 12.0459 -0.7081 -4.7056 41 1 12.0428 -0.0997 -3.0327 42 1 11.5485 -2.8796 -2.9693 43 1 13.4657 -5.4443 -2.0347 44 1 4.3203 -2.7203 0.8832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497749290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:26 Heat of formation + Delta-G solvation = -5.526789 kcal Electronic energy + Delta-G solvation = -25436.794800 eV Core-core repulsion = 21583.357688 eV Total energy + Delta-G solvation = -3853.437113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.73925 -39.68883 -38.06741 -36.38662 -35.30712 -34.71715 -33.16799 -32.85017 -31.09187 -30.42323 -29.42372 -27.65486 -26.18830 -24.12150 -23.38654 -22.31355 -21.83069 -20.68890 -19.46347 -19.09803 -18.42786 -17.39063 -17.11529 -16.37412 -16.16580 -15.57480 -15.23737 -14.80668 -14.64346 -14.36013 -14.12702 -13.96797 -13.73088 -13.59167 -13.42461 -13.29313 -13.17618 -12.86825 -12.78097 -12.47898 -12.35755 -12.12876 -11.98519 -11.83527 -11.07440 -10.97544 -10.86978 -10.65757 -10.58672 -10.20507 -10.07416 -9.84508 -9.59867 -9.43395 -9.27317 -9.03466 -8.75669 -6.98684 -5.81689 -3.11414 0.46868 0.67701 2.23238 2.49721 2.97295 3.14463 3.39987 3.44707 3.45873 3.48017 3.55921 3.93250 4.23877 4.38688 4.55928 4.62727 4.69784 4.84488 4.94860 5.01470 5.07802 5.18255 5.19986 5.22594 5.24432 5.41255 5.51298 5.53233 5.57520 5.63237 5.77258 5.95644 6.01960 6.09447 6.27530 6.42946 6.53224 6.62982 6.86248 7.04163 7.10293 7.38727 7.65196 7.77560 8.09091 8.36547 9.47967 10.04085 10.39300 11.41046 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023578 B = 0.001941 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.277771 B =14418.877065 C =15063.081401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.342 3.658 3 N -0.526 5.526 4 C 0.205 3.795 5 C -0.111 4.111 6 C -0.193 4.193 7 C -0.091 4.091 8 C 0.517 3.483 9 O -0.537 6.537 10 N -0.722 5.722 11 C 0.156 3.844 12 C -0.203 4.203 13 C -0.105 4.105 14 C 0.172 3.828 15 N -0.730 5.730 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.381 3.619 25 O -0.469 6.469 26 N -0.543 5.543 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.404 0.596 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.031 0.969 41 H 0.026 0.974 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.526 13.817 9.426 28.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 N -0.243 5.243 4 C 0.060 3.940 5 C -0.168 4.168 6 C -0.199 4.199 7 C -0.132 4.132 8 C 0.302 3.698 9 O -0.413 6.413 10 N -0.374 5.374 11 C 0.033 3.967 12 C -0.222 4.222 13 C -0.125 4.125 14 C 0.045 3.955 15 N -0.374 5.374 16 C -0.373 4.373 17 H 0.090 0.910 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.193 3.807 25 O -0.276 6.276 26 N -0.268 5.268 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.238 0.762 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -23.850 13.838 8.125 28.746 hybrid contribution 2.189 -0.853 0.863 2.503 sum -21.661 12.985 8.988 26.807 Atomic orbital electron populations 1.20597 0.85297 1.04243 1.04175 1.23028 0.97943 0.82147 0.89375 1.68119 1.09188 1.30219 1.16773 1.21445 0.89145 0.95266 0.88159 1.20869 0.99710 0.91980 1.04243 1.20915 0.96990 0.93947 1.08096 1.20436 0.90904 1.05955 0.95914 1.20310 0.82363 0.76328 0.90789 1.90731 1.55401 1.49069 1.46124 1.46020 1.06605 1.75254 1.09528 1.20316 0.91695 1.02211 0.82460 1.22678 0.93784 1.01540 1.04189 1.23354 0.97524 0.95870 0.95721 1.19832 0.87921 0.90328 0.97395 1.42305 1.04819 1.11144 1.79141 1.19293 0.83207 0.97866 1.36967 0.90997 1.24775 0.97829 0.96376 1.02015 1.69677 1.32650 1.05066 1.50654 0.86088 0.84900 0.77739 0.77274 1.20498 1.21817 1.21784 1.19202 0.86683 0.85287 0.89507 1.84802 1.74610 1.34294 1.33894 1.67795 1.09540 1.31852 1.17660 0.89385 0.89479 0.89352 0.89117 0.89547 0.89908 0.87155 0.87270 0.76164 0.91246 0.91145 0.86710 0.87278 0.95118 0.95648 0.78134 0.93478 0.73441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.32 36.00 0.37 -0.24 16 2 C 0.34 3.84 7.64 -157.23 -1.20 2.64 16 3 N -0.53 -6.01 10.27 -7.05 -0.07 -6.09 16 4 C 0.20 2.13 6.82 -82.31 -0.56 1.57 16 5 C -0.11 -0.78 9.84 36.01 0.35 -0.42 16 6 C -0.19 -2.04 4.42 -104.20 -0.46 -2.50 16 7 C -0.09 -0.74 5.29 -29.04 -0.15 -0.89 16 8 C 0.52 6.13 7.82 -10.99 -0.09 6.04 16 9 O -0.54 -8.83 16.03 5.56 0.09 -8.74 16 10 N -0.72 -7.72 5.55 -61.47 -0.34 -8.06 16 11 C 0.16 1.92 6.11 -5.19 -0.03 1.89 16 12 C -0.20 -2.64 9.24 -36.03 -0.33 -2.98 16 13 C -0.11 -1.68 9.24 -36.02 -0.33 -2.01 16 14 C 0.17 3.39 6.70 -5.19 -0.03 3.35 16 15 N -0.73 -18.40 5.59 -61.08 -0.34 -18.74 16 16 C -0.24 -6.74 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.38 4.51 7.81 -16.70 -0.13 4.38 16 25 O -0.47 -4.87 12.75 -18.23 -0.23 -5.10 16 26 N -0.54 -6.81 10.36 -10.79 -0.11 -6.92 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.39 6.07 -51.93 -0.32 0.07 16 33 H 0.11 0.54 6.08 -51.93 -0.32 0.22 16 34 H 0.11 0.68 7.63 -51.93 -0.40 0.28 16 35 H 0.40 3.38 8.46 -40.82 -0.35 3.03 16 36 H 0.07 0.96 7.79 -51.92 -0.40 0.56 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.12 1.38 7.84 -52.49 -0.41 0.97 16 39 H 0.11 1.74 7.84 -52.49 -0.41 1.32 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 42 H 0.39 10.23 7.66 -40.82 -0.31 9.92 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.41 1.85 9.06 45.56 0.41 2.26 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -37.81 380.59 -7.83 -45.64 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.41 Total: 9.02 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.85 Total: 3.46 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -0.14 Total: -67.14 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.14 Total: -13.84 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.81 -7.83 -45.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497749290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.108 kcal (2) G-P(sol) polarization free energy of solvation -37.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds