Wall clock time and date at job start Tue Mar 31 2020 12:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31787 * 119.09552 * 2 1 4 4 C 1.32491 * 120.96431 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.41061 * 180.02562 * 4 3 2 6 6 C 1.38230 * 119.17927 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.82707 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47326 * 269.97824 * 7 6 4 9 9 O 1.21282 * 119.99834 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00325 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00219 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47220 * 180.02562 * 11 10 8 13 13 C 1.31002 * 119.99665 * 124.99650 * 12 11 10 14 14 C 1.50709 * 119.99512 * 179.97438 * 13 12 11 15 15 N 1.46497 * 109.46829 * 125.00034 * 14 13 12 16 16 C 1.36935 * 119.99964 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99828 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00302 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99710 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00040 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47299 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46695 * 120.00067 * 20 18 16 23 23 H 1.48502 * 109.47054 * 240.00102 * 20 18 16 24 24 C 1.39375 * 118.35061 * 359.97438 * 6 4 3 25 25 O 1.35512 * 120.51345 * 179.97438 * 24 6 4 26 26 N 1.31767 * 119.09380 * 180.23380 * 2 1 3 27 27 H 1.09002 * 109.46951 * 89.99858 * 1 2 3 28 28 H 1.09002 * 109.46963 * 209.99771 * 1 2 3 29 29 H 1.09000 * 109.47022 * 330.00107 * 1 2 3 30 30 H 1.08998 * 109.47148 * 269.97820 * 5 4 3 31 31 H 1.09002 * 109.47268 * 29.97754 * 5 4 3 32 32 H 1.08995 * 109.47643 * 149.97612 * 5 4 3 33 33 H 1.09003 * 109.46834 * 29.97656 * 7 6 4 34 34 H 1.09004 * 109.47417 * 149.97457 * 7 6 4 35 35 H 0.97000 * 120.00090 * 359.97438 * 10 8 7 36 36 H 1.09010 * 109.46757 * 300.00066 * 11 10 8 37 37 H 1.08997 * 109.46970 * 59.99768 * 11 10 8 38 38 H 1.07994 * 119.99857 * 305.00256 * 12 11 10 39 39 H 1.07991 * 120.00511 * 0.02562 * 13 12 11 40 40 H 1.09000 * 109.46690 * 245.00000 * 14 13 12 41 41 H 1.09004 * 109.47126 * 5.00334 * 14 13 12 42 42 H 0.97003 * 120.00287 * 359.97438 * 15 14 13 43 43 H 0.96998 * 119.99989 * 179.97438 * 19 18 16 44 44 H 0.96700 * 114.00230 * 90.00290 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1478 1.1516 0.0000 4 6 3.4720 1.1948 0.0005 5 6 4.1920 2.5186 0.0011 6 6 4.1849 0.0105 0.0005 7 6 5.6919 0.0163 0.0017 8 6 6.1953 0.0184 -1.4187 9 8 5.4079 0.0149 -2.3412 10 7 7.5205 0.0240 -1.6640 11 6 8.0099 0.0266 -3.0449 12 6 9.5169 0.0323 -3.0438 13 6 10.1759 -0.8943 -3.6944 14 6 11.6829 -0.8883 -3.6937 15 7 12.1762 -2.1843 -3.2214 16 6 13.5234 -2.4143 -3.1358 17 1 14.2222 -1.6400 -3.4160 18 6 13.9908 -3.6425 -2.6887 19 7 13.1391 -4.5859 -2.3467 20 14 15.8286 -3.9564 -2.5726 21 1 16.5665 -2.7448 -3.0116 22 1 16.1888 -4.2727 -1.1670 23 1 16.1914 -5.1012 -3.4462 24 6 3.4754 -1.1891 0.0005 25 8 4.1300 -2.3757 0.0000 26 7 2.1476 -1.1514 -0.0047 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 4.3663 2.8379 -1.0264 31 1 3.5834 3.2630 0.5145 32 1 5.1470 2.4127 0.5156 33 1 6.0514 0.9077 0.5158 34 1 6.0583 -0.8723 0.5158 35 1 8.1503 0.0271 -0.9263 36 1 7.6507 -0.8648 -3.5593 37 1 7.6432 0.9152 -3.5587 38 1 10.0536 0.8001 -2.5065 39 1 9.6392 -1.6620 -4.2320 40 1 12.0459 -0.7081 -4.7056 41 1 12.0428 -0.0997 -3.0327 42 1 11.5485 -2.8796 -2.9693 43 1 13.4657 -5.4443 -2.0347 44 1 4.3203 -2.7203 0.8832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497749290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:26 Heat of formation + Delta-G solvation = -37.059512 kcal Electronic energy + Delta-G solvation = -25438.162162 eV Core-core repulsion = 21583.357688 eV Total energy + Delta-G solvation = -3854.804474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.49976 -40.64228 -38.82721 -37.70263 -36.31997 -35.94399 -34.42737 -33.89180 -32.51385 -31.47973 -30.04065 -28.88504 -27.23489 -25.68883 -24.20807 -23.63185 -22.86556 -21.63753 -20.68322 -19.86545 -19.18062 -19.11552 -18.24000 -17.34616 -16.98306 -16.68997 -16.48427 -15.96832 -15.69784 -15.40383 -15.26746 -15.09570 -14.98696 -14.67946 -14.39215 -14.24236 -14.18032 -13.71042 -13.50292 -13.36832 -13.33521 -13.09609 -13.01271 -12.88976 -12.76267 -12.61700 -12.15095 -11.99095 -11.78910 -11.70990 -11.37282 -11.22289 -11.03172 -10.40555 -10.38257 -10.13117 -9.95988 -9.01573 -7.96513 -5.26360 -0.30073 -0.09300 1.06687 1.48494 1.49375 1.59583 1.60368 2.26785 2.30163 2.56784 2.62651 2.90377 3.25333 3.37595 3.52193 3.72989 3.74073 3.93369 4.05451 4.10393 4.22748 4.23789 4.40820 4.47617 4.54971 4.65426 4.67091 4.67961 4.71951 4.73210 4.85401 4.92695 4.93271 5.01144 5.11932 5.34728 5.39918 5.47942 5.66758 5.83758 5.86766 6.25786 6.47124 6.54051 6.99919 7.22424 7.31794 8.06065 8.29731 9.27181 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.023578 B = 0.001941 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.277771 B =14418.877065 C =15063.081401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.327 3.673 3 N -0.542 5.542 4 C 0.194 3.806 5 C -0.109 4.109 6 C -0.202 4.202 7 C -0.083 4.083 8 C 0.516 3.484 9 O -0.588 6.588 10 N -0.712 5.712 11 C 0.158 3.842 12 C -0.157 4.157 13 C -0.135 4.135 14 C 0.174 3.826 15 N -0.745 5.745 16 C -0.247 4.247 17 H 0.079 0.921 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.976 3.024 21 H -0.264 1.264 22 H -0.291 1.291 23 H -0.295 1.295 24 C 0.364 3.636 25 O -0.483 6.483 26 N -0.570 5.570 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.150 0.850 34 H 0.131 0.869 35 H 0.418 0.582 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.103 0.897 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.374 0.626 43 H 0.252 0.748 44 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.862 15.667 10.665 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.060 3.940 3 N -0.260 5.260 4 C 0.049 3.951 5 C -0.166 4.166 6 C -0.208 4.208 7 C -0.123 4.123 8 C 0.303 3.697 9 O -0.468 6.468 10 N -0.365 5.365 11 C 0.034 3.966 12 C -0.176 4.176 13 C -0.155 4.155 14 C 0.048 3.952 15 N -0.387 5.387 16 C -0.379 4.379 17 H 0.097 0.903 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.805 3.195 21 H -0.188 1.188 22 H -0.218 1.218 23 H -0.222 1.222 24 C 0.177 3.823 25 O -0.294 6.294 26 N -0.297 5.297 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.167 0.833 34 H 0.149 0.851 35 H 0.255 0.745 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.154 0.846 39 H 0.121 0.879 40 H 0.046 0.954 41 H 0.055 0.945 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -23.156 15.729 9.388 29.525 hybrid contribution 1.901 -1.345 0.464 2.375 sum -21.254 14.384 9.851 27.490 Atomic orbital electron populations 1.20712 0.83119 1.05402 1.04798 1.23719 0.99452 0.81962 0.88863 1.68210 1.09958 1.30279 1.17504 1.22065 0.89156 0.96691 0.87211 1.20983 1.00844 0.90441 1.04293 1.21124 0.98230 0.93439 1.07962 1.20523 0.89291 1.08904 0.93629 1.20932 0.81993 0.74922 0.91828 1.90719 1.56615 1.51439 1.48004 1.45892 1.06794 1.74579 1.09196 1.20187 0.91011 1.01808 0.83575 1.22779 0.94006 0.99877 1.00983 1.23005 0.95484 0.97947 0.99017 1.19916 0.90291 0.88000 0.97001 1.42546 1.03963 1.12928 1.79286 1.19721 0.84670 0.97943 1.35557 0.90290 1.25625 1.02219 0.96422 1.02656 1.69832 1.34551 1.05377 1.52297 0.85031 0.79859 0.77740 0.76852 1.18833 1.21849 1.22189 1.19533 0.86911 0.86119 0.89706 1.84749 1.74447 1.34159 1.35998 1.67832 1.10261 1.32654 1.18938 0.88864 0.88621 0.87855 0.89723 0.88571 0.87154 0.83289 0.85062 0.74457 0.93102 0.90308 0.84630 0.87945 0.95354 0.94548 0.79447 0.93954 0.71006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.32 71.23 0.73 -0.41 16 2 C 0.33 7.33 7.64 138.76 1.06 8.39 16 3 N -0.54 -12.15 10.27 -176.23 -1.81 -13.96 16 4 C 0.19 3.80 6.82 42.46 0.29 4.09 16 5 C -0.11 -1.28 9.84 71.24 0.70 -0.58 16 6 C -0.20 -3.99 4.42 -19.59 -0.09 -4.08 16 7 C -0.08 -1.12 5.29 29.10 0.15 -0.96 16 8 C 0.52 11.27 7.82 87.66 0.69 11.96 16 9 O -0.59 -19.06 16.03 -3.04 -0.05 -19.10 16 10 N -0.71 -13.44 5.55 -466.78 -2.59 -16.03 16 11 C 0.16 3.61 6.11 85.63 0.52 4.13 16 12 C -0.16 -3.73 9.24 25.64 0.24 -3.49 16 13 C -0.14 -4.17 9.24 25.65 0.24 -3.94 16 14 C 0.17 6.67 6.70 85.64 0.57 7.24 16 15 N -0.74 -37.51 5.59 -347.16 -1.94 -39.45 16 16 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 17 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 19 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 20 Si 0.98 45.43 29.55 68.60 2.03 47.46 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 C 0.36 8.54 7.81 84.82 0.66 9.20 16 25 O -0.48 -9.86 12.75 -88.14 -1.12 -10.98 16 26 N -0.57 -14.46 10.36 -300.70 -3.12 -17.58 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.11 0.62 6.07 -2.39 -0.01 0.60 16 33 H 0.15 0.80 6.08 -2.39 -0.01 0.78 16 34 H 0.13 1.21 7.63 -2.38 -0.02 1.19 16 35 H 0.42 5.53 8.46 -92.71 -0.78 4.75 16 36 H 0.05 1.39 7.79 -2.38 -0.02 1.37 16 37 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.14 2.73 7.84 -2.91 -0.02 2.70 16 39 H 0.10 3.29 7.84 -2.92 -0.02 3.27 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 1.33 7.79 -2.39 -0.02 1.31 16 42 H 0.37 20.17 7.66 -92.71 -0.71 19.46 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.43 3.59 9.06 -74.06 -0.67 2.92 16 Total: -1.00 -83.13 380.59 -2.35 -85.48 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -1.10 Total: 28.13 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 7.08 Total: 14.81 kcal Atomic # 7 Polarization: -136.62 SS G_CDS: -9.17 Total: -145.79 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -1.17 Total: -30.09 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -83.13 -2.35 -85.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497749290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.418 kcal (2) G-P(sol) polarization free energy of solvation -83.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds