Wall clock time and date at job start Tue Mar 31 2020 12:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00058 * 2 1 4 4 H 1.48500 * 109.47111 * 270.00259 * 3 2 1 5 5 H 1.48496 * 109.47215 * 30.00170 * 3 2 1 6 6 H 1.48496 * 109.47231 * 150.00472 * 3 2 1 7 7 C 1.38808 * 119.99609 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99747 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99947 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47189 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46497 * 305.00127 * 11 10 9 13 13 C 1.52996 * 109.46969 * 64.99967 * 11 10 9 14 14 C 1.53002 * 109.46972 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46817 * 299.99733 * 14 13 11 16 16 C 1.53006 * 109.47127 * 60.00361 * 15 14 13 17 17 C 1.52997 * 109.47143 * 184.99897 * 11 10 9 18 18 H 1.09002 * 109.47153 * 60.00035 * 17 11 10 19 19 N 1.46497 * 109.46983 * 300.00028 * 17 11 10 20 20 C 1.34778 * 119.99664 * 155.00345 * 19 17 11 21 21 O 1.21594 * 120.00270 * 359.97438 * 20 19 17 22 22 C 1.47577 * 120.00033 * 180.02562 * 20 19 17 23 23 C 1.38046 * 119.72824 * 180.02562 * 22 20 19 24 24 N 1.34878 * 119.95002 * 179.97438 * 23 22 20 25 25 H 0.97002 * 120.31493 * 179.97438 * 24 23 22 26 26 C 1.34958 * 119.38047 * 359.97438 * 24 23 22 27 27 O 1.21863 * 120.26837 * 180.02562 * 26 24 23 28 28 C 1.41790 * 119.46061 * 0.02562 * 26 24 23 29 29 N 1.30601 * 120.03103 * 359.73178 * 28 26 24 30 30 H 0.96999 * 119.99663 * 359.97438 * 1 2 3 31 31 H 0.96993 * 120.00294 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.46878 * 59.99772 * 10 9 7 33 33 H 1.09001 * 109.47359 * 300.00348 * 10 9 7 34 34 H 1.08996 * 109.47452 * 59.99938 * 13 11 10 35 35 H 1.09000 * 109.47054 * 300.00097 * 13 11 10 36 36 H 1.09002 * 109.47070 * 179.97438 * 14 13 11 37 37 H 1.08996 * 109.47407 * 59.99513 * 14 13 11 38 38 H 1.09001 * 109.47502 * 300.00518 * 15 14 13 39 39 H 1.09001 * 109.47289 * 180.02562 * 15 14 13 40 40 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 41 41 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 42 42 H 0.96991 * 120.00469 * 334.99986 * 19 17 11 43 43 H 1.07998 * 120.02863 * 359.94595 * 23 22 20 44 44 H 1.08002 * 119.98301 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8198 -0.0012 12 1 0.3793 -4.7130 0.8404 13 6 0.2695 -4.8109 -1.3088 14 6 -0.7252 -5.9735 -1.3092 15 6 0.0351 -7.2952 -1.1832 16 6 0.8294 -7.3040 0.1245 17 6 1.8245 -6.1412 0.1245 18 1 2.3904 -6.1475 1.0561 19 7 2.7444 -6.2846 -1.0066 20 6 3.8437 -7.0552 -0.8876 21 8 4.0722 -7.6311 0.1586 22 6 4.7707 -7.1992 -2.0268 23 6 5.8947 -7.9904 -1.8990 24 7 6.7447 -8.1256 -2.9374 25 1 7.5363 -8.6799 -2.8533 26 6 6.4836 -7.4824 -4.0948 27 8 7.2404 -7.5935 -5.0435 28 6 5.3217 -6.6764 -4.1979 29 7 4.5111 -6.5648 -3.1800 30 1 -0.4849 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 2.6847 -3.7145 0.8894 33 1 2.6847 -3.7146 -0.8905 34 1 0.9539 -4.9176 -2.1504 35 1 -0.2725 -3.8694 -1.3984 36 1 -1.2914 -5.9669 -2.2406 37 1 -1.4096 -5.8664 -0.4676 38 1 0.7196 -7.4023 -2.0248 39 1 -0.6734 -8.1235 -1.1840 40 1 0.1450 -7.1970 0.9660 41 1 1.3707 -8.2458 0.2144 42 1 2.5624 -5.8250 -1.8411 43 1 6.0936 -8.5004 -0.9680 44 1 5.1048 -6.1576 -5.1200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498492681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:36 Heat of formation + Delta-G solvation = -56.086476 kcal Electronic energy + Delta-G solvation = -27206.070006 eV Core-core repulsion = 23350.440461 eV Total energy + Delta-G solvation = -3855.629545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.86408 -41.27161 -39.46923 -38.45724 -36.45205 -36.36123 -34.56892 -33.68132 -31.86031 -31.20369 -30.46362 -26.98532 -26.53219 -25.65758 -24.65772 -23.54815 -22.68727 -21.93631 -20.48490 -19.97684 -19.42840 -19.17896 -18.24666 -17.19030 -17.18090 -16.82890 -16.68200 -16.20577 -15.98104 -15.76916 -15.45028 -15.29129 -15.08078 -14.89968 -14.60950 -14.55358 -13.99180 -13.69290 -13.37137 -13.07284 -12.94500 -12.89835 -12.83494 -12.72811 -12.68344 -12.56320 -12.09749 -11.89721 -11.82267 -11.40098 -11.25828 -11.13430 -10.99455 -10.82247 -10.57836 -9.99048 -9.41494 -8.96323 -7.93618 -5.21440 -0.57990 0.05867 1.41913 1.47712 1.48913 1.57277 1.74531 2.20757 2.56836 2.61805 3.01889 3.10721 3.39827 3.60381 3.70711 3.83618 3.88031 3.89672 4.13014 4.21574 4.28794 4.47002 4.52499 4.52918 4.62562 4.70251 4.77389 4.82679 4.97276 5.05899 5.13357 5.16107 5.21769 5.25283 5.31226 5.35604 5.39440 5.49358 5.51035 5.56782 5.65331 6.28900 6.31445 6.49623 6.66528 7.20047 7.35960 8.11942 8.36496 9.29729 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.003642 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.874062 B = 7686.558131 C = 9335.276444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.740 5.740 10 C 0.162 3.838 11 C -0.089 4.089 12 H 0.081 0.919 13 C -0.106 4.106 14 C -0.114 4.114 15 C -0.109 4.109 16 C -0.121 4.121 17 C 0.161 3.839 18 H 0.077 0.923 19 N -0.694 5.694 20 C 0.588 3.412 21 O -0.571 6.571 22 C -0.103 4.103 23 C 0.208 3.792 24 N -0.568 5.568 25 H 0.443 0.557 26 C 0.479 3.521 27 O -0.556 6.556 28 C 0.036 3.964 29 N -0.383 5.383 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.007 0.993 33 H 0.019 0.981 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.412 0.588 43 H 0.221 0.779 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 -22.348 -4.762 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.383 5.383 10 C 0.035 3.965 11 C -0.108 4.108 12 H 0.099 0.901 13 C -0.143 4.143 14 C -0.151 4.151 15 C -0.147 4.147 16 C -0.159 4.159 17 C 0.056 3.944 18 H 0.095 0.905 19 N -0.345 5.345 20 C 0.374 3.626 21 O -0.452 6.452 22 C -0.226 4.226 23 C 0.070 3.930 24 N -0.201 5.201 25 H 0.286 0.714 26 C 0.276 3.724 27 O -0.434 6.434 28 C -0.154 4.154 29 N -0.098 5.098 30 H 0.060 0.940 31 H 0.209 0.791 32 H 0.025 0.975 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.249 0.751 43 H 0.237 0.763 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 7.667 -22.203 -4.514 23.919 hybrid contribution 0.970 0.924 -0.213 1.357 sum 8.637 -21.279 -4.727 23.447 Atomic orbital electron populations 1.69804 1.06428 1.26017 1.59468 1.25483 0.96362 1.00799 1.03698 0.85200 0.77679 0.79798 0.77452 1.21359 1.22046 1.19800 1.19576 0.91287 0.85572 1.41259 0.91272 1.42523 1.05642 1.00889 1.89242 1.20743 0.93663 0.85039 0.97033 1.21467 0.96927 0.92680 0.99724 0.90063 1.21447 0.97989 0.98747 0.96162 1.21527 0.97421 0.93839 1.02338 1.21451 0.98760 0.97294 0.97167 1.21859 0.97522 0.97291 0.99237 1.20889 0.89957 0.94218 0.89347 0.90522 1.45875 1.23076 1.48258 1.17273 1.17417 0.80591 0.78782 0.85776 1.90777 1.75722 1.49341 1.29317 1.20299 0.99801 1.07759 0.94764 1.23488 0.86136 0.90427 0.92924 1.43564 1.24398 1.40653 1.11447 0.71408 1.18832 0.88954 0.82210 0.82445 1.91002 1.50824 1.64541 1.36995 1.24961 0.90328 1.00374 0.99701 1.67647 1.29135 1.14317 0.98726 0.93982 0.79102 0.97526 0.96280 0.92173 0.93437 0.91228 0.91760 0.92209 0.90582 0.90093 0.91524 0.75058 0.76251 0.77556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.92 13.06 21.65 0.28 -58.64 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 46.46 29.55 68.60 2.03 48.49 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.74 -37.47 5.33 -343.44 -1.83 -39.30 16 10 C 0.16 6.47 5.42 86.38 0.47 6.94 16 11 C -0.09 -2.71 2.02 -10.79 -0.02 -2.73 16 12 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 13 C -0.11 -3.03 4.90 30.59 0.15 -2.88 16 14 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 15 C -0.11 -2.09 5.77 30.60 0.18 -1.91 16 16 C -0.12 -2.53 5.61 30.61 0.17 -2.36 16 17 C 0.16 4.14 2.23 45.01 0.10 4.24 16 18 H 0.08 2.19 7.58 -2.39 -0.02 2.18 16 19 N -0.69 -17.07 3.61 -445.59 -1.61 -18.68 16 20 C 0.59 14.06 7.75 86.71 0.67 14.73 16 21 O -0.57 -15.58 15.94 -4.01 -0.06 -15.64 16 22 C -0.10 -1.94 6.71 41.21 0.28 -1.66 16 23 C 0.21 2.32 10.77 84.18 0.91 3.23 16 24 N -0.57 -5.68 5.28 -316.86 -1.67 -7.35 16 25 H 0.44 1.64 8.92 -92.71 -0.83 0.81 16 26 C 0.48 8.30 7.74 85.09 0.66 8.96 16 27 O -0.56 -13.37 17.95 -4.87 -0.09 -13.46 16 28 C 0.04 0.63 11.23 85.75 0.96 1.59 16 29 N -0.38 -7.64 9.62 -183.47 -1.77 -9.41 16 30 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.38 20.02 6.85 -92.71 -0.64 19.39 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.02 0.78 7.61 -2.39 -0.02 0.76 16 34 H 0.06 1.68 6.51 -2.39 -0.02 1.66 16 35 H 0.05 1.67 7.18 -2.39 -0.02 1.66 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.17 7.61 -2.39 -0.02 1.15 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.41 10.22 5.98 -92.71 -0.55 9.66 16 43 H 0.22 1.19 7.58 -2.91 -0.02 1.17 16 44 H 0.21 2.82 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -74.23 360.22 0.33 -73.90 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.96 Total: 30.92 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 6.01 Total: 9.17 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -6.60 Total: -133.38 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.15 Total: -29.10 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -74.23 0.33 -73.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498492681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.809 kcal (2) G-P(sol) polarization free energy of solvation -74.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds