Wall clock time and date at job start Tue Mar 31 2020 12:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99956 * 2 1 4 4 H 1.48505 * 109.46497 * 239.99882 * 3 2 1 5 5 H 1.48503 * 109.46948 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47373 * 119.99935 * 3 2 1 7 7 C 1.38806 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00168 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00451 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47391 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47280 * 55.00358 * 11 10 9 13 13 C 1.52996 * 109.46975 * 294.99824 * 11 10 9 14 14 C 1.53000 * 109.47328 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 11 16 16 C 1.53006 * 109.47127 * 300.00449 * 15 14 13 17 17 C 1.52997 * 109.47164 * 59.99836 * 16 15 14 18 18 H 1.09002 * 109.47045 * 180.02562 * 17 16 15 19 19 N 1.46500 * 109.47204 * 60.00075 * 17 16 15 20 20 C 1.34779 * 119.99793 * 85.00113 * 19 17 16 21 21 O 1.21587 * 120.00157 * 359.97438 * 20 19 17 22 22 C 1.47576 * 119.99925 * 180.02562 * 20 19 17 23 23 C 1.38043 * 119.72977 * 179.72691 * 22 20 19 24 24 N 1.34879 * 119.95151 * 179.74328 * 23 22 20 25 25 H 0.96992 * 120.30953 * 180.24777 * 24 23 22 26 26 C 1.34958 * 119.38190 * 0.52238 * 24 23 22 27 27 O 1.21853 * 120.27069 * 179.70277 * 26 24 23 28 28 C 1.41791 * 119.45542 * 359.72586 * 26 24 23 29 29 N 1.30602 * 120.03702 * 0.02562 * 28 26 24 30 30 H 0.97000 * 120.00085 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99612 * 359.97438 * 9 7 2 32 32 H 1.09004 * 109.46722 * 59.99676 * 10 9 7 33 33 H 1.09001 * 109.46952 * 300.00757 * 10 9 7 34 34 H 1.09004 * 109.47368 * 60.00217 * 13 11 10 35 35 H 1.09001 * 109.47372 * 300.00372 * 13 11 10 36 36 H 1.09002 * 109.47398 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47194 * 300.00476 * 14 13 11 38 38 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 39 39 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 40 40 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 41 41 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 42 42 H 0.96995 * 120.00272 * 264.99653 * 19 17 16 43 43 H 1.07998 * 120.02504 * 359.97438 * 23 22 20 44 44 H 1.08008 * 119.97958 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8197 -0.0001 12 1 0.3800 -4.7127 -0.8421 13 6 0.2686 -4.8115 1.3069 14 6 -0.7253 -5.9747 1.3066 15 6 0.0361 -7.2959 1.1812 16 6 0.8314 -7.3041 -0.1258 17 6 1.8252 -6.1409 -0.1255 18 1 2.3915 -6.1465 -1.0568 19 7 2.7443 -6.2841 1.0063 20 6 3.8440 -7.0543 0.8880 21 8 4.0731 -7.6305 -0.1579 22 6 4.7696 -7.1990 2.0283 23 6 5.8913 -7.9938 1.9028 24 7 6.7430 -8.1251 2.9404 25 1 7.5346 -8.6793 2.8568 26 6 6.4806 -7.4827 4.0979 27 8 7.2361 -7.5944 5.0474 28 6 5.3182 -6.6773 4.2003 29 7 4.5110 -6.5616 3.1801 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3880 0.0005 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8894 34 1 -0.2736 -3.8700 1.3965 35 1 0.9524 -4.9185 2.1490 36 1 -1.2922 -5.9686 2.2376 37 1 -1.4091 -5.8682 0.4646 38 1 0.7200 -7.4025 2.0232 39 1 -0.6719 -8.1247 1.1806 40 1 0.1476 -7.1976 -0.9679 41 1 1.3742 -8.2452 -0.2149 42 1 2.5615 -5.8247 1.8408 43 1 6.0888 -8.5070 0.9733 44 1 5.0997 -6.1597 5.1228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498492685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:43 Heat of formation + Delta-G solvation = -30.745122 kcal Electronic energy + Delta-G solvation = -27205.697154 eV Core-core repulsion = 23351.166493 eV Total energy + Delta-G solvation = -3854.530662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.13779 -40.23819 -38.46497 -37.55354 -35.68149 -34.62320 -33.56780 -31.89528 -31.03447 -29.75062 -29.28465 -25.86433 -25.35445 -24.75878 -22.99723 -22.47412 -21.73482 -20.60976 -19.57359 -19.03441 -18.60716 -17.59508 -17.04692 -16.44287 -16.33525 -15.77357 -15.33273 -15.07762 -14.81804 -14.65273 -14.48656 -14.02586 -13.81025 -13.57173 -13.25820 -13.04362 -12.83462 -12.67556 -12.22411 -12.06586 -11.99388 -11.87694 -11.64081 -11.38294 -10.86899 -10.85671 -10.68971 -10.37499 -10.24556 -10.19216 -9.96455 -9.83314 -9.80389 -9.59187 -8.98271 -8.83009 -8.64102 -6.88456 -5.74058 -3.02019 0.05668 0.85400 2.05423 2.60633 3.10694 3.41667 3.46055 3.50419 3.51346 3.74486 3.81275 4.31891 4.57834 4.60022 4.82325 4.89796 4.92578 4.96608 5.28453 5.36984 5.47526 5.59986 5.64495 5.66469 5.70116 5.71971 5.78588 5.86307 5.90260 6.07746 6.16039 6.18965 6.27962 6.30719 6.41309 6.53913 6.58966 6.72487 6.84139 6.91834 7.04484 7.22834 7.60595 7.72500 8.18015 8.45301 9.56492 10.14548 10.49403 11.48837 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.003642 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.323017 B = 7686.638930 C = 9334.858188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.068 0.932 9 N -0.730 5.730 10 C 0.159 3.841 11 C -0.102 4.102 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.120 4.120 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.154 3.846 18 H 0.090 0.910 19 N -0.692 5.692 20 C 0.588 3.412 21 O -0.550 6.550 22 C -0.073 4.073 23 C 0.173 3.827 24 N -0.587 5.587 25 H 0.425 0.575 26 C 0.478 3.522 27 O -0.522 6.522 28 C 0.045 3.955 29 N -0.369 5.369 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.017 0.983 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.412 0.588 43 H 0.191 0.809 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.772 -20.757 4.707 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.032 3.968 11 C -0.121 4.121 12 H 0.104 0.896 13 C -0.149 4.149 14 C -0.158 4.158 15 C -0.154 4.154 16 C -0.166 4.166 17 C 0.049 3.951 18 H 0.108 0.892 19 N -0.343 5.343 20 C 0.373 3.627 21 O -0.429 6.429 22 C -0.197 4.197 23 C 0.037 3.963 24 N -0.220 5.220 25 H 0.265 0.735 26 C 0.273 3.727 27 O -0.397 6.397 28 C -0.146 4.146 29 N -0.085 5.085 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.038 0.962 33 H 0.035 0.965 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.250 0.750 43 H 0.208 0.792 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.664 -20.561 4.464 22.071 hybrid contribution 1.204 0.486 0.264 1.325 sum 7.868 -20.075 4.728 22.075 Atomic orbital electron populations 1.69641 1.05060 1.25696 1.57914 1.24703 0.95492 0.97575 1.03119 0.86291 0.78542 0.83668 0.77833 1.21345 1.21702 1.21310 1.19173 0.90961 0.84239 1.42525 0.91404 1.42349 1.05807 0.99877 1.89451 1.20652 0.93001 0.85321 0.97861 1.21628 0.97823 0.93297 0.99321 0.89563 1.21543 0.97724 0.98957 0.96707 1.21580 0.98043 0.94510 1.01654 1.21501 0.98658 0.97533 0.97726 1.21905 0.97905 0.98403 0.98397 1.21040 0.89736 0.94775 0.89549 0.89231 1.45893 1.22781 1.48027 1.17595 1.17165 0.80691 0.79454 0.85424 1.90793 1.75226 1.48453 1.28406 1.20512 0.98699 1.05267 0.95218 1.23216 0.87907 0.92802 0.92423 1.43687 1.24081 1.41667 1.12540 0.73509 1.18819 0.89334 0.82313 0.82238 1.91008 1.49869 1.63247 1.35622 1.24788 0.90461 0.99955 0.99406 1.67721 1.28439 1.13950 0.98347 0.93516 0.78208 0.96231 0.96545 0.90249 0.92437 0.92258 0.91947 0.92185 0.92531 0.90912 0.91751 0.75021 0.79241 0.78796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.10 5.33 -59.91 -0.32 -18.42 16 10 C 0.16 3.13 5.41 -4.04 -0.02 3.11 16 11 C -0.10 -1.54 2.02 -90.62 -0.18 -1.73 16 12 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.11 -1.60 4.90 -26.73 -0.13 -1.73 16 14 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 15 C -0.12 -1.25 5.77 -26.73 -0.15 -1.40 16 16 C -0.13 -1.45 5.60 -26.73 -0.15 -1.60 16 17 C 0.15 2.03 2.23 -67.93 -0.15 1.87 16 18 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 19 N -0.69 -8.76 3.60 -54.83 -0.20 -8.95 16 20 C 0.59 7.38 7.75 -12.45 -0.10 7.28 16 21 O -0.55 -7.90 15.94 5.29 0.08 -7.81 16 22 C -0.07 -0.75 6.71 -83.11 -0.56 -1.31 16 23 C 0.17 1.20 10.77 -16.28 -0.18 1.02 16 24 N -0.59 -3.68 5.28 -14.20 -0.08 -3.75 16 25 H 0.42 1.42 8.92 -40.82 -0.36 1.05 16 26 C 0.48 4.49 7.74 -14.82 -0.11 4.37 16 27 O -0.52 -6.54 17.95 5.05 0.09 -6.45 16 28 C 0.04 0.41 11.23 -16.72 -0.19 0.22 16 29 N -0.37 -3.88 9.62 -9.34 -0.09 -3.97 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 32 H 0.02 0.39 7.61 -51.93 -0.40 0.00 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 1.36 7.18 -51.93 -0.37 0.99 16 35 H 0.06 0.80 6.50 -51.93 -0.34 0.47 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.66 7.60 -51.93 -0.39 0.26 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.41 5.21 5.98 -40.82 -0.24 4.97 16 43 H 0.19 0.87 7.58 -52.49 -0.40 0.47 16 44 H 0.20 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -34.32 360.21 -7.81 -42.13 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.11 Total: 10.37 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -2.33 Total: 1.27 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.04 Total: -62.40 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.17 Total: -14.26 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.32 -7.81 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498492685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.390 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds