Wall clock time and date at job start Tue Mar 31 2020 12:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 S 1.81404 * 109.47024 * 59.99808 * 3 2 1 5 5 C 1.81405 * 103.00087 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47097 * 179.97438 * 5 4 3 7 7 C 1.38297 * 119.93202 * 89.99811 * 6 5 4 8 8 C 1.38101 * 120.07230 * 180.02562 * 7 6 5 9 9 C 1.38886 * 119.92536 * 359.97438 * 8 7 6 10 10 O 1.35750 * 120.06440 * 180.02562 * 9 8 7 11 11 C 1.34828 * 117.00075 * 5.53777 * 10 9 8 12 12 H 1.07993 * 120.00518 * 354.94289 * 11 10 9 13 13 C 1.38663 * 119.99751 * 174.94575 * 11 10 9 14 14 N 1.31556 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99821 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47448 * 89.99502 * 15 13 11 17 17 H 1.48501 * 109.47175 * 209.99712 * 15 13 11 18 18 H 1.48506 * 109.47415 * 329.99678 * 15 13 11 19 19 C 1.38874 * 119.86623 * 0.27854 * 9 8 7 20 20 C 1.38106 * 119.92542 * 359.44577 * 19 9 8 21 21 C 1.53002 * 109.46511 * 119.99706 * 2 1 3 22 22 C 1.53003 * 109.46869 * 60.00466 * 21 2 1 23 23 C 1.53001 * 109.47271 * 59.99665 * 22 21 2 24 24 C 1.52991 * 109.47215 * 299.99807 * 23 22 21 25 25 C 1.52999 * 109.47142 * 60.00100 * 24 23 22 26 26 H 1.09008 * 109.46830 * 60.00315 * 1 2 3 27 27 H 1.08993 * 109.46841 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47389 * 300.00583 * 1 2 3 29 29 H 1.08996 * 109.46955 * 300.00008 * 3 2 1 30 30 H 1.08999 * 109.46928 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46824 * 59.99572 * 5 4 3 32 32 H 1.09004 * 109.46696 * 299.99831 * 5 4 3 33 33 H 1.07999 * 119.96698 * 0.02562 * 7 6 5 34 34 H 1.07992 * 120.03608 * 179.97438 * 8 7 6 35 35 H 0.96996 * 120.00178 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.03745 * 179.72497 * 19 9 8 37 37 H 1.07997 * 119.96326 * 180.27708 * 20 19 9 38 38 H 1.09002 * 109.46746 * 180.02562 * 21 2 1 39 39 H 1.08996 * 109.47752 * 300.00108 * 21 2 1 40 40 H 1.09002 * 109.47151 * 299.99402 * 22 21 2 41 41 H 1.09008 * 109.46693 * 179.97438 * 22 21 2 42 42 H 1.09002 * 109.47109 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.46733 * 59.99858 * 23 22 21 44 44 H 1.08997 * 109.47409 * 300.00403 * 24 23 22 45 45 H 1.08996 * 109.47519 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.47344 * 180.02562 * 25 24 23 47 47 H 1.08993 * 109.47381 * 60.00138 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 1.4353 2.2976 1.4811 5 6 2.1319 3.9632 1.3037 6 6 1.7122 4.8108 2.4770 7 6 2.4986 4.8535 3.6138 8 6 2.1164 5.6288 4.6908 9 6 0.9412 6.3666 4.6312 10 8 0.5632 7.1301 5.6880 11 6 1.4276 7.2196 6.7189 12 1 2.3344 6.6330 6.7157 13 6 1.1524 8.0648 7.7831 14 7 0.0480 8.7797 7.7868 15 14 2.3503 8.1893 9.2109 16 1 3.3384 9.2633 8.9359 17 1 1.6057 8.5086 10.4554 18 1 3.0594 6.8951 9.3766 19 6 0.1510 6.3175 3.4902 20 6 0.5416 5.5447 2.4143 21 6 2.0399 -0.7212 1.2493 22 6 1.5299 -2.1637 1.2493 23 6 2.0400 -2.8850 0.0000 24 6 1.5301 -2.1638 -1.2492 25 6 2.0401 -0.7213 -1.2492 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.7659 4.4136 0.3811 32 1 3.2196 3.9004 1.2710 33 1 3.4125 4.2799 3.6594 34 1 2.7307 5.6614 5.5784 35 1 -0.1447 9.3707 8.5314 36 1 -0.7656 6.8866 3.4426 37 1 -0.0701 5.5096 1.5251 38 1 3.1299 -0.7208 1.2496 39 1 1.6766 -0.2074 2.1393 40 1 0.4399 -2.1637 1.2492 41 1 1.8935 -2.6777 2.1391 42 1 1.6770 -3.9128 0.0002 43 1 3.1300 -2.8850 0.0002 44 1 0.4401 -2.1637 -1.2493 45 1 1.8931 -2.6779 -2.1391 46 1 1.6765 -0.2073 -2.1390 47 1 3.1300 -0.7213 -1.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559414605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:41 Heat of formation + Delta-G solvation = -39.632288 kcal Electronic energy + Delta-G solvation = -23720.570488 eV Core-core repulsion = 20379.654913 eV Total energy + Delta-G solvation = -3340.915575 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.66886 -39.05164 -36.70925 -33.50421 -32.48533 -31.15821 -30.99796 -30.18866 -27.69685 -26.75429 -26.10138 -24.88205 -22.89771 -21.99567 -21.48407 -20.54823 -18.58304 -18.01493 -17.02342 -16.13176 -15.76566 -15.11656 -14.94117 -14.78508 -14.66455 -14.47436 -14.17571 -13.89117 -13.68794 -13.53126 -13.40989 -13.02706 -12.73670 -12.64545 -12.32389 -12.26638 -12.06306 -11.88256 -11.72081 -11.63237 -11.28760 -11.19894 -11.19650 -10.90982 -10.72338 -10.65684 -10.46081 -10.43958 -10.30026 -10.26380 -9.60441 -9.36709 -8.83758 -8.21175 -7.42486 -7.17621 -6.48303 -4.06294 1.54388 2.21108 2.46068 2.90857 3.12226 3.13297 3.17311 3.94504 4.32188 4.40608 4.51362 4.58454 4.77945 4.98631 5.00675 5.06991 5.12481 5.16347 5.16729 5.20874 5.28305 5.29410 5.30179 5.40574 5.46150 5.55556 5.69506 5.72238 5.74493 5.74958 5.78143 5.83050 5.84569 5.91770 6.00335 6.04158 6.11420 6.19004 6.26336 6.35390 6.38570 6.66301 6.87230 7.02296 7.20934 7.33394 7.40855 7.78114 7.96802 8.97135 9.66437 10.69415 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.002182 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.992169 B =12829.841675 C =13307.929905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.086 4.086 4 S -0.252 6.252 5 C -0.022 4.022 6 C -0.178 4.178 7 C -0.050 4.050 8 C -0.235 4.235 9 C 0.159 3.841 10 O -0.174 6.174 11 C -0.392 4.392 12 H 0.093 0.907 13 C 0.039 3.961 14 N -0.860 5.860 15 Si 0.942 3.058 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.267 1.267 19 C -0.193 4.193 20 C -0.054 4.054 21 C -0.111 4.111 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.105 4.105 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.128 0.872 35 H 0.271 0.729 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.619 -18.713 -16.769 25.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.041 4.041 3 C -0.235 4.235 4 S -0.022 6.022 5 C -0.169 4.169 6 C -0.180 4.180 7 C -0.070 4.070 8 C -0.254 4.254 9 C 0.104 3.896 10 O -0.077 6.077 11 C -0.468 4.468 12 H 0.110 0.890 13 C -0.165 4.165 14 N -0.495 5.495 15 Si 0.766 3.234 16 H -0.198 1.198 17 H -0.202 1.202 18 H -0.191 1.191 19 C -0.213 4.213 20 C -0.074 4.074 21 C -0.149 4.149 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.144 4.144 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.081 0.919 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.667 -18.826 -15.775 24.834 hybrid contribution 1.489 0.607 -0.293 1.634 sum 5.156 -18.219 -16.068 24.833 Atomic orbital electron populations 1.22031 0.93921 1.01792 1.02677 1.20283 0.96345 0.91650 0.95822 1.23528 1.02816 0.98097 0.99029 1.87250 1.71095 1.11385 1.32422 1.22071 1.01773 0.93287 0.99763 1.18585 0.99145 1.04485 0.95835 1.20578 0.97844 0.96399 0.92179 1.21131 1.00025 1.03722 1.00541 1.19424 0.92017 0.90111 0.88002 1.83975 1.42459 1.58223 1.23033 1.21355 1.02823 1.26186 0.96432 0.88960 1.25314 0.97455 0.95230 0.98539 1.70037 1.23389 1.24416 1.31642 0.85698 0.79178 0.79096 0.79395 1.19839 1.20212 1.19138 1.20183 1.02191 1.06174 0.92747 1.20470 0.94794 0.94986 0.97103 1.21656 1.00449 0.95033 0.97714 1.21592 1.01091 0.95710 0.97511 1.21538 1.00647 0.98636 0.94861 1.21557 1.01132 0.95339 0.97689 1.21595 1.00483 0.95453 0.96918 0.92873 0.92158 0.91195 0.90658 0.90726 0.90556 0.90602 0.87424 0.85415 0.91941 0.86362 0.86979 0.92123 0.90425 0.91648 0.92122 0.92334 0.92203 0.91590 0.92264 0.92036 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 7.54 37.16 0.28 -1.09 16 2 C -0.04 -0.36 0.54 -154.50 -0.08 -0.44 16 3 C -0.09 -0.86 4.94 37.16 0.18 -0.68 16 4 S -0.25 -3.37 18.77 -107.50 -2.02 -5.38 16 5 C -0.02 -0.30 6.07 36.00 0.22 -0.08 16 6 C -0.18 -3.07 5.14 -104.58 -0.54 -3.61 16 7 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 8 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 9 C 0.16 3.86 6.65 -39.11 -0.26 3.60 16 10 O -0.17 -4.96 9.76 0.05 0.00 -4.96 16 11 C -0.39 -10.91 9.49 30.89 0.29 -10.61 16 12 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 13 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 14 N -0.86 -25.12 13.67 55.48 0.76 -24.36 16 15 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 C -0.19 -4.11 9.99 -39.39 -0.39 -4.51 16 20 C -0.05 -0.97 9.69 -39.61 -0.38 -1.35 16 21 C -0.11 -1.05 4.49 -26.73 -0.12 -1.17 16 22 C -0.12 -0.99 5.65 -26.73 -0.15 -1.14 16 23 C -0.12 -0.84 5.92 -26.74 -0.16 -1.00 16 24 C -0.12 -0.82 5.65 -26.74 -0.15 -0.97 16 25 C -0.11 -0.79 4.73 -26.73 -0.13 -0.91 16 26 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 28 H 0.07 0.78 6.91 -51.93 -0.36 0.42 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.08 0.95 8.08 -51.92 -0.42 0.53 16 32 H 0.08 0.96 8.09 -51.92 -0.42 0.54 16 33 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.90 16 36 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.88 6.91 -51.93 -0.36 0.52 16 40 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 41 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.46 6.43 -51.93 -0.33 0.12 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -29.43 376.33 -10.52 -39.94 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.68 Total: 3.46 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: -2.23 Total: -29.77 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.76 Total: -24.36 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: 0.00 Total: -4.96 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.02 Total: -5.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.43 -10.52 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559414605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.312 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds