Wall clock time and date at job start Tue Mar 31 2020 12:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 S 1.81404 * 109.47024 * 59.99808 * 3 2 1 5 5 C 1.81405 * 103.00087 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47097 * 179.97438 * 5 4 3 7 7 C 1.38297 * 119.93202 * 89.99811 * 6 5 4 8 8 C 1.38101 * 120.07230 * 180.02562 * 7 6 5 9 9 C 1.38886 * 119.92536 * 359.97438 * 8 7 6 10 10 O 1.35750 * 120.06440 * 180.02562 * 9 8 7 11 11 C 1.34828 * 117.00075 * 5.53777 * 10 9 8 12 12 H 1.07993 * 120.00518 * 354.94289 * 11 10 9 13 13 C 1.38663 * 119.99751 * 174.94575 * 11 10 9 14 14 N 1.31556 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 119.99821 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47448 * 89.99502 * 15 13 11 17 17 H 1.48501 * 109.47175 * 209.99712 * 15 13 11 18 18 H 1.48506 * 109.47415 * 329.99678 * 15 13 11 19 19 C 1.38874 * 119.86623 * 0.27854 * 9 8 7 20 20 C 1.38106 * 119.92542 * 359.44577 * 19 9 8 21 21 C 1.53002 * 109.46511 * 119.99706 * 2 1 3 22 22 C 1.53003 * 109.46869 * 60.00466 * 21 2 1 23 23 C 1.53001 * 109.47271 * 59.99665 * 22 21 2 24 24 C 1.52991 * 109.47215 * 299.99807 * 23 22 21 25 25 C 1.52999 * 109.47142 * 60.00100 * 24 23 22 26 26 H 1.09008 * 109.46830 * 60.00315 * 1 2 3 27 27 H 1.08993 * 109.46841 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47389 * 300.00583 * 1 2 3 29 29 H 1.08996 * 109.46955 * 300.00008 * 3 2 1 30 30 H 1.08999 * 109.46928 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46824 * 59.99572 * 5 4 3 32 32 H 1.09004 * 109.46696 * 299.99831 * 5 4 3 33 33 H 1.07999 * 119.96698 * 0.02562 * 7 6 5 34 34 H 1.07992 * 120.03608 * 179.97438 * 8 7 6 35 35 H 0.96996 * 120.00178 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.03745 * 179.72497 * 19 9 8 37 37 H 1.07997 * 119.96326 * 180.27708 * 20 19 9 38 38 H 1.09002 * 109.46746 * 180.02562 * 21 2 1 39 39 H 1.08996 * 109.47752 * 300.00108 * 21 2 1 40 40 H 1.09002 * 109.47151 * 299.99402 * 22 21 2 41 41 H 1.09008 * 109.46693 * 179.97438 * 22 21 2 42 42 H 1.09002 * 109.47109 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.46733 * 59.99858 * 23 22 21 44 44 H 1.08997 * 109.47409 * 300.00403 * 24 23 22 45 45 H 1.08996 * 109.47519 * 180.02562 * 24 23 22 46 46 H 1.09002 * 109.47344 * 180.02562 * 25 24 23 47 47 H 1.08993 * 109.47381 * 60.00138 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 1.4353 2.2976 1.4811 5 6 2.1319 3.9632 1.3037 6 6 1.7122 4.8108 2.4770 7 6 2.4986 4.8535 3.6138 8 6 2.1164 5.6288 4.6908 9 6 0.9412 6.3666 4.6312 10 8 0.5632 7.1301 5.6880 11 6 1.4276 7.2196 6.7189 12 1 2.3344 6.6330 6.7157 13 6 1.1524 8.0648 7.7831 14 7 0.0480 8.7797 7.7868 15 14 2.3503 8.1893 9.2109 16 1 3.3384 9.2633 8.9359 17 1 1.6057 8.5086 10.4554 18 1 3.0594 6.8951 9.3766 19 6 0.1510 6.3175 3.4902 20 6 0.5416 5.5447 2.4143 21 6 2.0399 -0.7212 1.2493 22 6 1.5299 -2.1637 1.2493 23 6 2.0400 -2.8850 0.0000 24 6 1.5301 -2.1638 -1.2492 25 6 2.0401 -0.7213 -1.2492 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.7659 4.4136 0.3811 32 1 3.2196 3.9004 1.2710 33 1 3.4125 4.2799 3.6594 34 1 2.7307 5.6614 5.5784 35 1 -0.1447 9.3707 8.5314 36 1 -0.7656 6.8866 3.4426 37 1 -0.0701 5.5096 1.5251 38 1 3.1299 -0.7208 1.2496 39 1 1.6766 -0.2074 2.1393 40 1 0.4399 -2.1637 1.2492 41 1 1.8935 -2.6777 2.1391 42 1 1.6770 -3.9128 0.0002 43 1 3.1300 -2.8850 0.0002 44 1 0.4401 -2.1637 -1.2493 45 1 1.8931 -2.6779 -2.1391 46 1 1.6765 -0.2073 -2.1390 47 1 3.1300 -0.7213 -1.2491 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559414605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:40 Heat of formation + Delta-G solvation = -52.620654 kcal Electronic energy + Delta-G solvation = -23721.133705 eV Core-core repulsion = 20379.654913 eV Total energy + Delta-G solvation = -3341.478792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.155 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.80023 -40.32423 -38.44546 -34.41739 -34.15643 -32.68310 -31.81742 -31.64501 -28.55853 -27.88659 -27.35735 -26.53036 -23.65985 -23.51893 -22.41924 -21.87299 -19.87116 -19.25578 -18.86597 -17.18948 -16.53433 -16.47620 -16.34947 -16.02938 -15.84073 -15.58502 -15.46121 -15.20136 -14.98217 -14.61663 -14.51182 -14.35475 -14.11399 -13.70889 -13.47737 -13.36036 -13.09234 -12.91322 -12.85763 -12.60606 -12.47851 -12.39994 -12.35736 -12.12555 -12.06460 -11.89079 -11.83548 -11.20937 -11.17987 -11.00395 -10.94536 -10.77793 -10.47867 -9.81815 -8.89444 -8.48454 -8.46878 -6.16324 0.27416 0.57458 1.16284 1.34791 1.45170 1.52339 1.84567 2.17067 2.84391 3.17670 3.48382 3.64133 3.73521 3.86407 3.91194 3.95607 4.14432 4.16455 4.33024 4.35189 4.39245 4.45939 4.53151 4.56123 4.59280 4.63797 4.68041 4.72033 4.75794 4.82363 4.90754 5.03740 5.04111 5.12907 5.14033 5.17993 5.22110 5.25839 5.30700 5.31677 5.39867 5.47450 5.53042 5.56588 5.68262 5.68899 5.72941 6.01126 6.16372 6.95990 7.75725 8.74559 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.002182 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.992169 B =12829.841675 C =13307.929905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.038 4.038 3 C -0.072 4.072 4 S -0.286 6.286 5 C -0.021 4.021 6 C -0.152 4.152 7 C -0.051 4.051 8 C -0.243 4.243 9 C 0.118 3.882 10 O -0.229 6.229 11 C -0.414 4.414 12 H 0.102 0.898 13 C -0.023 4.023 14 N -0.919 5.919 15 Si 1.019 2.981 16 H -0.262 1.262 17 H -0.271 1.271 18 H -0.253 1.253 19 C -0.204 4.204 20 C -0.049 4.049 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.101 4.101 26 H 0.058 0.942 27 H 0.067 0.933 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.273 0.727 36 H 0.115 0.885 37 H 0.147 0.853 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.589 -21.213 -19.525 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.220 4.220 4 S -0.056 6.056 5 C -0.168 4.168 6 C -0.154 4.154 7 C -0.071 4.071 8 C -0.262 4.262 9 C 0.067 3.933 10 O -0.136 6.136 11 C -0.490 4.490 12 H 0.119 0.881 13 C -0.221 4.221 14 N -0.557 5.557 15 Si 0.838 3.162 16 H -0.187 1.187 17 H -0.195 1.195 18 H -0.177 1.177 19 C -0.224 4.224 20 C -0.069 4.069 21 C -0.147 4.147 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.140 4.140 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.156 0.844 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.165 0.835 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.651 -21.353 -18.577 28.862 hybrid contribution 0.889 1.091 0.176 1.418 sum 6.540 -20.262 -18.401 28.141 Atomic orbital electron populations 1.21996 0.94282 1.02075 1.01801 1.20291 0.95998 0.91179 0.96408 1.23585 1.03302 0.98042 0.97049 1.87481 1.71533 1.11337 1.35294 1.22072 1.03111 0.92995 0.98600 1.19058 0.97511 1.02593 0.96240 1.20909 0.99080 0.95677 0.91445 1.21230 0.99299 1.04109 1.01553 1.19959 0.93916 0.91062 0.88348 1.83943 1.43986 1.61050 1.24607 1.21830 1.03365 1.26823 0.97007 0.88075 1.26613 0.99483 0.94541 1.01437 1.70181 1.26046 1.26347 1.33137 0.84579 0.76634 0.79743 0.75211 1.18713 1.19549 1.17689 1.20439 1.02040 1.06880 0.93020 1.20853 0.95361 0.93622 0.97035 1.21612 1.00393 0.95641 0.97056 1.21581 1.00851 0.95122 0.98309 1.21524 1.00736 0.98925 0.94270 1.21560 1.01089 0.94997 0.97974 1.21570 1.00748 0.95630 0.96090 0.92324 0.91419 0.93352 0.89430 0.89697 0.88398 0.88687 0.84407 0.86184 0.91784 0.86658 0.83548 0.92058 0.92735 0.92018 0.92249 0.91580 0.92018 0.91690 0.91057 0.91214 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.54 71.98 0.54 -1.82 16 2 C -0.04 -0.57 0.54 -52.18 -0.03 -0.59 16 3 C -0.07 -1.18 4.94 71.98 0.36 -0.82 16 4 S -0.29 -6.85 18.77 -56.49 -1.06 -7.91 16 5 C -0.02 -0.49 6.07 71.24 0.43 -0.06 16 6 C -0.15 -4.84 5.14 -19.84 -0.10 -4.94 16 7 C -0.05 -1.82 9.69 22.25 0.22 -1.61 16 8 C -0.24 -10.77 9.17 22.39 0.21 -10.56 16 9 C 0.12 6.00 6.65 22.58 0.15 6.15 16 10 O -0.23 -14.00 9.76 -22.72 -0.22 -14.22 16 11 C -0.41 -24.37 9.49 67.92 0.64 -23.72 16 12 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 13 C -0.02 -1.32 5.49 84.84 0.47 -0.86 16 14 N -0.92 -56.79 13.67 21.62 0.30 -56.50 16 15 Si 1.02 43.14 29.55 68.60 2.03 45.17 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 19 C -0.20 -8.88 9.99 22.39 0.22 -8.65 16 20 C -0.05 -1.69 9.69 22.25 0.22 -1.47 16 21 C -0.11 -1.85 4.49 30.60 0.14 -1.72 16 22 C -0.12 -1.76 5.65 30.60 0.17 -1.59 16 23 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 24 C -0.12 -1.24 5.65 30.59 0.17 -1.07 16 25 C -0.10 -1.15 4.73 30.59 0.14 -1.01 16 26 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.07 1.00 4.81 -2.39 -0.01 0.99 16 28 H 0.05 1.01 6.91 -2.39 -0.02 0.99 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.10 1.95 8.08 -2.39 -0.02 1.93 16 32 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 33 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 35 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 36 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.05 1.18 6.91 -2.39 -0.02 1.16 16 40 H 0.06 0.93 6.43 -2.39 -0.02 0.92 16 41 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 45 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -68.91 376.33 6.11 -62.80 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.94 Total: 26.16 kcal Atomic # 6 Polarization: -59.63 SS G_CDS: 4.13 Total: -55.50 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.30 Total: -56.50 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.22 Total: -14.22 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.06 Total: -7.91 kcal Total: -68.91 6.11 -62.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559414605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.177 kcal (2) G-P(sol) polarization free energy of solvation -68.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds