Wall clock time and date at job start Tue Mar 31 2020 12:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48505 * 109.47106 * 269.92900 * 3 2 1 5 5 H 1.48504 * 109.47222 * 149.93471 * 3 2 1 6 6 H 1.48500 * 109.47259 * 29.93390 * 3 2 1 7 7 C 1.38949 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00295 * 35.53841 * 7 2 1 9 9 N 1.37108 * 119.99962 * 215.54041 * 7 2 1 10 10 C 1.46498 * 120.00038 * 30.81718 * 9 7 2 11 11 C 1.50698 * 109.47232 * 94.76522 * 10 9 7 12 12 C 1.35352 * 126.91244 * 264.68666 * 11 10 9 13 13 N 1.33776 * 106.49496 * 179.90507 * 12 11 10 14 14 N 1.28637 * 108.88450 * 0.36924 * 13 12 11 15 15 N 1.28714 * 110.18121 * 359.76134 * 14 13 12 16 16 H 0.96998 * 125.87186 * 179.97438 * 15 14 13 17 17 C 1.34768 * 119.99969 * 210.81698 * 9 7 2 18 18 O 1.21293 * 120.00242 * 184.81654 * 17 9 7 19 19 C 1.50705 * 120.00000 * 4.81193 * 17 9 7 20 20 H 1.08994 * 115.54822 * 32.00956 * 19 17 9 21 21 C 1.52993 * 117.50008 * 246.29733 * 19 17 9 22 22 C 1.53000 * 60.00170 * 252.50971 * 21 19 17 23 23 H 1.09005 * 117.49687 * 107.48790 * 22 21 19 24 24 C 1.52995 * 117.52299 * 252.51687 * 22 21 19 25 25 C 1.53179 * 109.54674 * 248.18638 * 24 22 21 26 26 C 1.53091 * 109.16353 * 183.14959 * 25 24 22 27 27 O 1.42904 * 109.41498 * 57.61122 * 26 25 24 28 28 C 1.42909 * 114.09498 * 298.83794 * 27 26 25 29 29 C 1.53093 * 109.41368 * 61.16189 * 28 27 26 30 30 H 0.97003 * 119.99381 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47101 * 214.76866 * 10 9 7 32 32 H 1.09003 * 109.47119 * 334.76932 * 10 9 7 33 33 H 1.07996 * 126.75692 * 0.03535 * 12 11 10 34 34 H 1.09004 * 117.50264 * 359.97438 * 21 19 17 35 35 H 1.08999 * 117.50258 * 145.02440 * 21 19 17 36 36 H 1.09000 * 109.53926 * 8.44981 * 24 22 21 37 37 H 1.08997 * 109.51962 * 303.05727 * 25 24 22 38 38 H 1.08999 * 109.52083 * 63.24392 * 25 24 22 39 39 H 1.09001 * 109.47962 * 297.62880 * 26 25 24 40 40 H 1.09002 * 109.47758 * 177.58911 * 26 25 24 41 41 H 1.09003 * 109.48506 * 301.17778 * 28 27 26 42 42 H 1.09001 * 109.48118 * 181.14372 * 28 27 26 43 43 H 1.08998 * 109.52474 * 182.48614 * 29 28 27 44 44 H 1.08994 * 109.57830 * 62.32772 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4972 2.0456 -1.4001 5 1 3.5450 1.4406 0.7014 6 1 1.4449 2.6531 0.6986 7 6 2.0089 -1.2033 0.0005 8 1 1.6198 -2.0518 -0.5427 9 7 3.1884 -1.3137 0.6908 10 6 3.4034 -0.5223 1.9047 11 6 3.0308 -1.3433 3.1122 12 6 1.8435 -1.3408 3.7620 13 7 1.9581 -2.2175 4.7660 14 7 3.1408 -2.7231 4.7442 15 7 3.8179 -2.2270 3.7685 16 1 4.7349 -2.4482 3.5427 17 6 4.1499 -2.1501 0.2525 18 8 5.1567 -2.3138 0.9088 19 6 3.9741 -2.8822 -1.0530 20 1 3.4047 -2.3520 -1.8163 21 6 3.8331 -4.4046 -0.9958 22 6 5.1243 -3.7752 -1.5226 23 1 6.0082 -3.8332 -0.8873 24 6 5.3872 -3.8556 -3.0277 25 6 6.5766 -4.7842 -3.2913 26 6 6.8815 -4.7967 -4.7915 27 8 7.1467 -3.4638 -5.2334 28 6 6.0527 -2.5617 -5.0556 29 6 5.7145 -2.4593 -3.5660 30 1 -0.4849 0.8401 -0.0004 31 1 4.4529 -0.2353 1.9702 32 1 2.7834 0.3735 1.8691 33 1 0.9738 -0.7493 3.5169 34 1 3.8679 -4.8768 -0.0139 35 1 3.1707 -4.8763 -1.7215 36 1 4.5019 -4.2427 -3.5322 37 1 7.4483 -4.4234 -2.7454 38 1 6.3308 -5.7935 -2.9611 39 1 6.0239 -5.1955 -5.3334 40 1 7.7539 -5.4224 -4.9798 41 1 5.1843 -2.9312 -5.6010 42 1 6.3281 -1.5773 -5.4343 43 1 4.8523 -1.8061 -3.4323 44 1 6.5680 -2.0512 -3.0249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577706834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:42 Heat of formation + Delta-G solvation = 40.535295 kcal Electronic energy + Delta-G solvation = -27646.097227 eV Core-core repulsion = 23794.657517 eV Total energy + Delta-G solvation = -3851.439711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.73909 -39.85602 -38.96466 -36.72441 -35.15533 -32.95528 -32.72665 -32.30708 -31.12550 -31.05556 -26.94645 -25.62042 -25.07801 -23.69820 -22.85128 -22.24501 -21.42862 -20.94090 -19.87721 -19.01867 -18.08782 -17.10675 -16.60602 -16.02834 -15.99448 -15.85040 -15.17574 -14.90431 -14.65449 -14.48077 -14.20765 -13.81012 -13.74088 -13.53793 -13.23463 -12.99774 -12.56024 -12.42174 -12.14844 -11.81491 -11.60615 -11.46080 -11.37140 -11.11688 -11.03650 -10.77199 -10.74649 -10.49610 -10.39722 -10.08234 -10.01044 -9.95782 -9.59365 -9.49759 -9.41712 -8.97462 -8.58366 -8.19753 -6.79412 -4.19450 2.04336 2.87654 3.04174 3.05679 3.07568 3.27848 3.33268 3.81736 3.89955 4.08438 4.22801 4.56853 4.75630 4.85657 4.91127 4.98811 5.07907 5.15378 5.25710 5.32585 5.38036 5.40378 5.48512 5.52032 5.56782 5.65146 5.70464 5.85883 5.87764 5.90409 5.92630 6.02739 6.04759 6.13515 6.17977 6.25724 6.36515 6.48500 6.64577 6.69746 6.97626 7.12636 7.36014 7.76601 8.04753 8.70812 8.94554 9.09866 9.40453 10.30349 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013838 B = 0.004144 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.893110 B = 6755.295085 C = 8045.861043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.079 3.921 3 Si 0.843 3.157 4 H -0.273 1.273 5 H -0.255 1.255 6 H -0.277 1.277 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.443 5.443 10 C 0.179 3.821 11 C -0.005 4.005 12 C -0.033 4.033 13 N -0.277 5.277 14 N -0.101 5.101 15 N -0.379 5.379 16 H 0.448 0.552 17 C 0.501 3.499 18 O -0.607 6.607 19 C -0.144 4.144 20 H 0.125 0.875 21 C -0.153 4.153 22 C -0.126 4.126 23 H 0.111 0.889 24 C -0.055 4.055 25 C -0.147 4.147 26 C 0.061 3.939 27 O -0.387 6.387 28 C 0.061 3.939 29 C -0.150 4.150 30 H 0.279 0.721 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.189 0.811 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.280 -3.490 -6.992 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.132 4.132 3 Si 0.667 3.333 4 H -0.199 1.199 5 H -0.180 1.180 6 H -0.202 1.202 7 C -0.486 4.486 8 H 0.125 0.875 9 N -0.161 5.161 10 C 0.053 3.947 11 C -0.140 4.140 12 C -0.191 4.191 13 N -0.144 5.144 14 N -0.081 5.081 15 N -0.101 5.101 16 H 0.294 0.706 17 C 0.292 3.708 18 O -0.494 6.494 19 C -0.165 4.165 20 H 0.143 0.857 21 C -0.191 4.191 22 C -0.145 4.145 23 H 0.129 0.871 24 C -0.074 4.074 25 C -0.185 4.185 26 C -0.016 4.016 27 O -0.306 6.306 28 C -0.016 4.016 29 C -0.188 4.188 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.206 0.794 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.561 -4.344 -5.501 11.064 hybrid contribution 0.253 1.515 -1.039 1.854 sum 8.814 -2.829 -6.540 11.334 Atomic orbital electron populations 1.69996 1.06700 1.28821 1.39807 1.25227 0.94618 0.98385 0.94945 0.87607 0.81727 0.84289 0.79649 1.19855 1.18008 1.20247 1.18954 0.96681 0.99321 1.33613 0.87538 1.43648 1.15128 1.38109 1.19259 1.20327 1.01627 0.92376 0.80367 1.22930 0.93036 0.98659 0.99380 1.23392 0.98555 1.02156 0.95045 1.74993 1.09347 1.09672 1.20369 1.78123 1.00722 1.20435 1.08823 1.45125 1.15692 1.28649 1.20637 0.70571 1.19466 0.81976 0.82943 0.86431 1.90474 1.30464 1.68799 1.59657 1.22005 1.03113 0.92883 0.98460 0.85705 1.22936 0.99614 0.94092 1.02462 1.22316 0.93406 1.03674 0.95060 0.87062 1.20752 0.97741 0.95198 0.93692 1.22210 0.98989 1.00431 0.96851 1.22574 1.01047 0.84134 0.93836 1.87907 1.39148 1.19896 1.83629 1.22618 0.89542 0.93764 0.95678 1.22226 1.03060 0.97555 0.95973 0.91087 0.90104 0.88237 0.79373 0.89158 0.88688 0.91082 0.90913 0.90833 0.93381 0.89164 0.93302 0.89001 0.90249 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.09 13.96 55.50 0.77 -19.32 16 2 C 0.08 1.83 5.03 -17.47 -0.09 1.75 16 3 Si 0.84 17.18 26.31 -169.99 -4.47 12.71 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.26 -4.98 5.54 56.52 0.31 -4.67 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.36 -8.30 8.79 -14.93 -0.13 -8.43 16 8 H 0.11 2.63 7.29 -52.49 -0.38 2.25 16 9 N -0.44 -9.43 2.26 -116.10 -0.26 -9.69 16 10 C 0.18 3.52 4.09 -5.20 -0.02 3.50 16 11 C 0.00 -0.09 6.85 -82.09 -0.56 -0.65 16 12 C -0.03 -0.66 11.99 -17.73 -0.21 -0.88 16 13 N -0.28 -5.71 12.41 30.24 0.38 -5.33 16 14 N -0.10 -1.98 13.38 60.35 0.81 -1.18 16 15 N -0.38 -6.95 6.98 33.54 0.23 -6.72 16 16 H 0.45 7.35 8.76 -190.40 -1.67 5.68 16 17 C 0.50 10.30 7.37 -10.99 -0.08 10.22 16 18 O -0.61 -12.99 15.76 5.55 0.09 -12.90 16 19 C -0.14 -2.52 4.23 -91.77 -0.39 -2.91 16 20 H 0.13 2.21 6.92 -51.93 -0.36 1.85 16 21 C -0.15 -2.36 9.88 -26.73 -0.26 -2.62 16 22 C -0.13 -1.85 4.67 -90.62 -0.42 -2.28 16 23 H 0.11 1.80 7.64 -51.93 -0.40 1.40 16 24 C -0.06 -0.67 2.43 -90.44 -0.22 -0.89 16 25 C -0.15 -1.56 5.40 -26.59 -0.14 -1.71 16 26 C 0.06 0.61 6.84 37.20 0.25 0.86 16 27 O -0.39 -4.74 10.77 -35.23 -0.38 -5.12 16 28 C 0.06 0.67 6.84 37.21 0.25 0.92 16 29 C -0.15 -1.86 5.21 -26.59 -0.14 -2.00 16 30 H 0.28 6.35 8.31 -40.82 -0.34 6.01 16 31 H 0.08 1.51 7.64 -51.93 -0.40 1.12 16 32 H 0.10 1.94 3.89 -51.93 -0.20 1.74 16 33 H 0.19 3.48 8.06 -52.49 -0.42 3.06 16 34 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 36 H 0.07 0.83 7.90 -51.93 -0.41 0.42 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.02 7.42 -51.93 -0.39 0.64 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -26.94 358.22 -7.25 -34.18 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -7.65 Total: 13.08 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -2.16 Total: -5.12 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 1.93 Total: -42.23 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.29 Total: -18.02 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -4.47 Total: 12.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.94 -7.25 -34.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.719 kcal (2) G-P(sol) polarization free energy of solvation -26.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds