Wall clock time and date at job start Tue Mar 31 2020 12:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 120.00008 * 2 1 4 4 H 1.48505 * 109.47106 * 269.92900 * 3 2 1 5 5 H 1.48504 * 109.47222 * 149.93471 * 3 2 1 6 6 H 1.48500 * 109.47259 * 29.93390 * 3 2 1 7 7 C 1.38949 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00295 * 35.53841 * 7 2 1 9 9 N 1.37108 * 119.99962 * 215.54041 * 7 2 1 10 10 C 1.46498 * 120.00038 * 30.81718 * 9 7 2 11 11 C 1.50698 * 109.47232 * 94.76522 * 10 9 7 12 12 C 1.35352 * 126.91244 * 264.68666 * 11 10 9 13 13 N 1.33776 * 106.49496 * 179.90507 * 12 11 10 14 14 N 1.28637 * 108.88450 * 0.36924 * 13 12 11 15 15 N 1.28714 * 110.18121 * 359.76134 * 14 13 12 16 16 H 0.96998 * 125.87186 * 179.97438 * 15 14 13 17 17 C 1.34768 * 119.99969 * 210.81698 * 9 7 2 18 18 O 1.21293 * 120.00242 * 184.81654 * 17 9 7 19 19 C 1.50705 * 120.00000 * 4.81193 * 17 9 7 20 20 H 1.08994 * 115.54822 * 32.00956 * 19 17 9 21 21 C 1.52993 * 117.50008 * 246.29733 * 19 17 9 22 22 C 1.53000 * 60.00170 * 252.50971 * 21 19 17 23 23 H 1.09005 * 117.49687 * 107.48790 * 22 21 19 24 24 C 1.52995 * 117.52299 * 252.51687 * 22 21 19 25 25 C 1.53179 * 109.54674 * 248.18638 * 24 22 21 26 26 C 1.53091 * 109.16353 * 183.14959 * 25 24 22 27 27 O 1.42904 * 109.41498 * 57.61122 * 26 25 24 28 28 C 1.42909 * 114.09498 * 298.83794 * 27 26 25 29 29 C 1.53093 * 109.41368 * 61.16189 * 28 27 26 30 30 H 0.97003 * 119.99381 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47101 * 214.76866 * 10 9 7 32 32 H 1.09003 * 109.47119 * 334.76932 * 10 9 7 33 33 H 1.07996 * 126.75692 * 0.03535 * 12 11 10 34 34 H 1.09004 * 117.50264 * 359.97438 * 21 19 17 35 35 H 1.08999 * 117.50258 * 145.02440 * 21 19 17 36 36 H 1.09000 * 109.53926 * 8.44981 * 24 22 21 37 37 H 1.08997 * 109.51962 * 303.05727 * 25 24 22 38 38 H 1.08999 * 109.52083 * 63.24392 * 25 24 22 39 39 H 1.09001 * 109.47962 * 297.62880 * 26 25 24 40 40 H 1.09002 * 109.47758 * 177.58911 * 26 25 24 41 41 H 1.09003 * 109.48506 * 301.17778 * 28 27 26 42 42 H 1.09001 * 109.48118 * 181.14372 * 28 27 26 43 43 H 1.08998 * 109.52474 * 182.48614 * 29 28 27 44 44 H 1.08994 * 109.57830 * 62.32772 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4972 2.0456 -1.4001 5 1 3.5450 1.4406 0.7014 6 1 1.4449 2.6531 0.6986 7 6 2.0089 -1.2033 0.0005 8 1 1.6198 -2.0518 -0.5427 9 7 3.1884 -1.3137 0.6908 10 6 3.4034 -0.5223 1.9047 11 6 3.0308 -1.3433 3.1122 12 6 1.8435 -1.3408 3.7620 13 7 1.9581 -2.2175 4.7660 14 7 3.1408 -2.7231 4.7442 15 7 3.8179 -2.2270 3.7685 16 1 4.7349 -2.4482 3.5427 17 6 4.1499 -2.1501 0.2525 18 8 5.1567 -2.3138 0.9088 19 6 3.9741 -2.8822 -1.0530 20 1 3.4047 -2.3520 -1.8163 21 6 3.8331 -4.4046 -0.9958 22 6 5.1243 -3.7752 -1.5226 23 1 6.0082 -3.8332 -0.8873 24 6 5.3872 -3.8556 -3.0277 25 6 6.5766 -4.7842 -3.2913 26 6 6.8815 -4.7967 -4.7915 27 8 7.1467 -3.4638 -5.2334 28 6 6.0527 -2.5617 -5.0556 29 6 5.7145 -2.4593 -3.5660 30 1 -0.4849 0.8401 -0.0004 31 1 4.4529 -0.2353 1.9702 32 1 2.7834 0.3735 1.8691 33 1 0.9738 -0.7493 3.5169 34 1 3.8679 -4.8768 -0.0139 35 1 3.1707 -4.8763 -1.7215 36 1 4.5019 -4.2427 -3.5322 37 1 7.4483 -4.4234 -2.7454 38 1 6.3308 -5.7935 -2.9611 39 1 6.0239 -5.1955 -5.3334 40 1 7.7539 -5.4224 -4.9798 41 1 5.1843 -2.9312 -5.6010 42 1 6.3281 -1.5773 -5.4343 43 1 4.8523 -1.8061 -3.4323 44 1 6.5680 -2.0512 -3.0249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577706834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:41 Heat of formation + Delta-G solvation = 24.392829 kcal Electronic energy + Delta-G solvation = -27646.797217 eV Core-core repulsion = 23794.657517 eV Total energy + Delta-G solvation = -3852.139701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.30347 -41.15601 -40.16859 -38.01385 -36.77435 -34.49970 -34.02189 -33.84214 -32.64471 -31.97933 -28.48374 -27.10809 -26.35095 -24.73410 -24.17462 -23.78298 -22.94762 -22.02968 -20.93170 -20.65564 -19.63955 -18.62620 -18.09532 -17.53630 -17.05423 -16.87897 -16.71003 -16.28566 -15.99227 -15.62660 -15.47827 -15.31741 -15.01453 -14.77375 -14.68060 -14.51208 -14.04078 -13.61713 -13.32451 -13.21075 -13.06152 -12.81767 -12.73012 -12.49560 -12.24838 -12.07233 -11.99929 -11.78163 -11.67090 -11.59073 -11.48273 -11.18059 -11.00449 -10.79311 -10.61636 -10.39236 -10.16806 -9.94138 -8.57401 -5.99906 0.48103 1.24449 1.40915 1.45556 1.45912 1.69907 1.83599 2.20211 2.54730 2.80947 3.00112 3.06527 3.52209 3.64098 3.70437 3.82718 3.91859 3.98147 4.06937 4.11857 4.21727 4.28966 4.31158 4.38586 4.42694 4.47803 4.55892 4.64649 4.67283 4.75365 4.83278 4.84285 4.89256 4.98745 5.12487 5.13993 5.19402 5.22994 5.27499 5.32660 5.51344 5.89042 6.02985 6.23283 6.30765 6.95340 7.36746 7.37921 7.71240 8.56066 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013838 B = 0.004144 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.893110 B = 6755.295085 C = 8045.861043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.052 3.948 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.242 1.242 6 H -0.272 1.272 7 C -0.359 4.359 8 H 0.082 0.918 9 N -0.452 5.452 10 C 0.177 3.823 11 C -0.007 4.007 12 C -0.039 4.039 13 N -0.293 5.293 14 N -0.103 5.103 15 N -0.367 5.367 16 H 0.456 0.544 17 C 0.497 3.503 18 O -0.617 6.617 19 C -0.168 4.168 20 H 0.121 0.879 21 C -0.144 4.144 22 C -0.103 4.103 23 H 0.097 0.903 24 C -0.053 4.053 25 C -0.143 4.143 26 C 0.058 3.942 27 O -0.405 6.405 28 C 0.062 3.938 29 C -0.149 4.149 30 H 0.283 0.717 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.197 0.803 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.318 -3.813 -7.922 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.157 4.157 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.166 1.166 6 H -0.197 1.197 7 C -0.486 4.486 8 H 0.100 0.900 9 N -0.171 5.171 10 C 0.052 3.948 11 C -0.143 4.143 12 C -0.197 4.197 13 N -0.160 5.160 14 N -0.084 5.084 15 N -0.090 5.090 16 H 0.304 0.696 17 C 0.289 3.711 18 O -0.505 6.505 19 C -0.188 4.188 20 H 0.138 0.862 21 C -0.182 4.182 22 C -0.121 4.121 23 H 0.115 0.885 24 C -0.071 4.071 25 C -0.181 4.181 26 C -0.018 4.018 27 O -0.324 6.324 28 C -0.014 4.014 29 C -0.187 4.187 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.214 0.786 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.623 -4.676 -6.422 12.478 hybrid contribution -0.035 1.535 -0.735 1.702 sum 9.588 -3.141 -7.157 12.370 Atomic orbital electron populations 1.70033 1.07943 1.29727 1.41594 1.25639 0.94888 1.00570 0.94603 0.86810 0.81259 0.81018 0.79348 1.20429 1.16608 1.19734 1.18729 0.97058 0.98817 1.33947 0.90001 1.43692 1.14836 1.38735 1.19791 1.20388 1.02282 0.92301 0.79874 1.22897 0.93089 0.98887 0.99394 1.23605 0.99051 1.02115 0.94907 1.74984 1.09782 1.10251 1.20975 1.78086 1.00688 1.20470 1.09148 1.45101 1.15933 1.27970 1.20019 0.69565 1.19994 0.81560 0.82433 0.87152 1.90456 1.30748 1.68978 1.60286 1.21973 1.05750 0.93912 0.97208 0.86153 1.23004 1.00409 0.92211 1.02580 1.22305 0.92098 1.01139 0.96589 0.88457 1.20778 0.99026 0.95657 0.91626 1.22182 0.97683 1.00634 0.97554 1.22737 1.02497 0.83463 0.93121 1.87890 1.39823 1.20942 1.83757 1.22648 0.89877 0.94328 0.94554 1.22188 1.02009 0.97414 0.97083 0.90696 0.89027 0.88031 0.78565 0.90273 0.86494 0.89931 0.91976 0.89374 0.92008 0.87474 0.92010 0.88198 0.91110 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.27 13.96 21.66 0.30 -41.97 16 2 C 0.05 2.38 5.03 84.93 0.43 2.80 16 3 Si 0.89 34.80 26.31 68.60 1.80 36.61 16 4 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.24 -8.83 5.54 99.48 0.55 -8.28 16 6 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 7 C -0.36 -16.64 8.79 84.04 0.74 -15.90 16 8 H 0.08 4.14 7.29 -2.91 -0.02 4.12 16 9 N -0.45 -19.04 2.26 -639.61 -1.44 -20.48 16 10 C 0.18 6.78 4.09 85.63 0.35 7.13 16 11 C -0.01 -0.26 6.85 41.35 0.28 0.02 16 12 C -0.04 -1.50 11.99 83.73 1.00 -0.50 16 13 N -0.29 -11.90 12.41 -58.26 -0.72 -12.62 16 14 N -0.10 -3.99 13.38 37.02 0.50 -3.50 16 15 N -0.37 -13.10 6.98 -47.79 -0.33 -13.43 16 16 H 0.46 14.48 8.76 -219.96 -1.93 12.55 16 17 C 0.50 20.25 7.37 87.66 0.65 20.89 16 18 O -0.62 -26.00 15.76 -3.07 -0.05 -26.05 16 19 C -0.17 -5.82 4.23 -11.54 -0.05 -5.87 16 20 H 0.12 4.28 6.92 -2.39 -0.02 4.26 16 21 C -0.14 -4.28 9.88 30.59 0.30 -3.98 16 22 C -0.10 -2.91 4.67 -10.80 -0.05 -2.96 16 23 H 0.10 3.08 7.64 -2.38 -0.02 3.06 16 24 C -0.05 -1.18 2.43 -10.67 -0.03 -1.21 16 25 C -0.14 -2.72 5.40 30.68 0.17 -2.56 16 26 C 0.06 1.00 6.84 72.01 0.49 1.50 16 27 O -0.40 -9.09 10.77 -148.98 -1.60 -10.69 16 28 C 0.06 1.26 6.84 72.01 0.49 1.76 16 29 C -0.15 -3.53 5.21 30.69 0.16 -3.37 16 30 H 0.28 12.93 8.31 -92.71 -0.77 12.16 16 31 H 0.09 3.29 7.64 -2.39 -0.02 3.27 16 32 H 0.10 3.83 3.89 -2.39 -0.01 3.82 16 33 H 0.20 7.18 8.06 -2.91 -0.02 7.16 16 34 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.12 2.94 8.05 -2.39 -0.02 2.92 16 36 H 0.08 1.71 7.90 -2.39 -0.02 1.69 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 1.78 7.42 -2.39 -0.02 1.76 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -56.27 358.22 2.34 -53.93 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -1.05 Total: 40.44 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: 4.94 Total: -2.24 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -1.70 Total: -92.00 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.65 Total: -36.74 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 1.80 Total: 36.61 kcal Total: -56.27 2.34 -53.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.322 kcal (2) G-P(sol) polarization free energy of solvation -56.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds