Wall clock time and date at job start Tue Mar 31 2020 12:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34226 * 116.99969 * 2 1 4 4 O 1.20821 * 119.99967 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99693 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47006 * 180.02562 * 5 3 2 7 7 N 1.46507 * 109.47103 * 180.02562 * 6 5 3 8 8 C 1.37091 * 119.99495 * 264.31348 * 7 6 5 9 9 H 1.08004 * 120.00014 * 143.48654 * 8 7 6 10 10 C 1.38955 * 120.00513 * 323.48443 * 8 7 6 11 11 N 1.31404 * 119.99929 * 339.65658 * 10 8 7 12 12 Si 1.86800 * 119.99896 * 159.64887 * 10 8 7 13 13 H 1.48502 * 109.47342 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46831 * 120.00395 * 12 10 8 15 15 H 1.48501 * 109.47088 * 240.00112 * 12 10 8 16 16 C 1.34773 * 119.99954 * 84.31664 * 7 6 5 17 17 O 1.21290 * 120.00365 * 5.71022 * 16 7 6 18 18 C 1.50705 * 119.99800 * 185.70504 * 16 7 6 19 19 H 1.09002 * 109.47210 * 332.25372 * 18 16 7 20 20 C 1.52991 * 109.47362 * 212.24868 * 18 16 7 21 21 N 1.46905 * 109.47003 * 62.82577 * 20 18 16 22 22 C 1.50705 * 109.46718 * 92.24770 * 18 16 7 23 23 C 1.38234 * 120.00125 * 239.99695 * 22 18 16 24 24 C 1.38237 * 119.99941 * 179.97438 * 23 22 18 25 25 C 1.38233 * 119.99978 * 359.97438 * 24 23 22 26 26 C 1.38235 * 120.00120 * 359.97438 * 25 24 23 27 27 C 1.38235 * 119.99953 * 0.09969 * 26 25 24 28 28 H 1.08995 * 109.46917 * 59.99543 * 1 2 3 29 29 H 1.08997 * 109.47021 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46835 * 299.99838 * 1 2 3 31 31 H 1.09008 * 109.46977 * 60.00555 * 5 3 2 32 32 H 1.08998 * 109.47672 * 300.00265 * 5 3 2 33 33 H 1.08998 * 109.47461 * 60.00298 * 6 5 3 34 34 H 1.09007 * 109.47210 * 299.99975 * 6 5 3 35 35 H 0.96994 * 120.00564 * 179.97438 * 11 10 8 36 36 H 1.09000 * 109.47285 * 182.82211 * 20 18 16 37 37 H 1.09005 * 109.47278 * 302.83067 * 20 18 16 38 38 H 1.00897 * 111.00128 * 62.27619 * 21 20 18 39 39 H 1.00905 * 110.99671 * 186.23362 * 21 20 18 40 40 H 1.07995 * 119.99818 * 0.02562 * 23 22 18 41 41 H 1.07993 * 119.99802 * 180.02562 * 24 23 22 42 42 H 1.08001 * 119.99949 * 179.72305 * 25 24 23 43 43 H 1.08001 * 120.00199 * 179.97438 * 26 25 24 44 44 H 1.07998 * 119.99860 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4633 2.8186 0.0011 8 6 6.1416 2.9715 1.1825 9 1 7.0899 2.4756 1.3289 10 6 5.6093 3.7644 2.1919 11 7 4.6995 4.6685 1.9063 12 14 6.1868 3.5449 3.9547 13 1 7.2096 2.4696 4.0104 14 1 6.7786 4.8161 4.4436 15 1 5.0317 3.1748 4.8116 16 6 6.1422 2.7388 -1.1604 17 8 5.5411 2.7080 -2.2135 18 6 7.6484 2.6881 -1.1509 19 1 8.0235 3.1980 -0.2635 20 6 8.1899 3.3796 -2.4035 21 7 7.8042 4.7970 -2.3859 22 6 8.1024 1.2512 -1.1342 23 6 8.8752 0.7826 -0.0882 24 6 9.2912 -0.5356 -0.0727 25 6 8.9340 -1.3853 -1.1028 26 6 8.1603 -0.9170 -2.1483 27 6 7.7456 0.4016 -2.1646 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9564 0.7805 -0.8893 32 1 3.9558 0.7808 0.8908 33 1 3.6103 3.2359 0.8911 34 1 3.6108 3.2363 -0.8890 35 1 4.3275 5.2218 2.6108 36 1 9.2768 3.2991 -2.4219 37 1 7.7751 2.9012 -3.2908 38 1 8.2075 5.2717 -1.5922 39 1 8.0615 5.2525 -3.2488 40 1 9.1532 1.4462 0.7172 41 1 9.8946 -0.9017 0.7447 42 1 9.2628 -2.4140 -1.0929 43 1 7.8816 -1.5807 -2.9534 44 1 7.1415 0.7676 -2.9816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578805207.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:50 Heat of formation + Delta-G solvation = -91.925928 kcal Electronic energy + Delta-G solvation = -27916.510987 eV Core-core repulsion = 24027.034575 eV Total energy + Delta-G solvation = -3889.476411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.02967 -39.53903 -38.03072 -36.17106 -35.20414 -34.29763 -31.92768 -31.70149 -30.59271 -30.45151 -27.69602 -27.10270 -24.97586 -23.84129 -22.54510 -22.02364 -20.99961 -19.97833 -18.89460 -17.38095 -16.86749 -16.56688 -16.20933 -16.08396 -15.84938 -15.33838 -14.78180 -14.59101 -14.29877 -14.12032 -13.81622 -13.59123 -13.46790 -13.09006 -12.88603 -12.64415 -12.47133 -12.34757 -12.12060 -11.91132 -11.72475 -11.53430 -11.25160 -11.02446 -10.95704 -10.78581 -10.52778 -10.50741 -10.38232 -10.25665 -10.00957 -9.88470 -9.12029 -8.68029 -8.58192 -8.20965 -8.01502 -7.48399 -6.33518 -4.03967 1.67430 1.73745 2.71159 3.08388 3.11641 3.22165 3.24162 3.93116 4.08517 4.17977 4.73747 4.91974 5.04567 5.22986 5.24108 5.26875 5.33406 5.34455 5.39582 5.59118 5.65669 5.67932 5.75440 5.87069 5.88597 5.90358 6.01378 6.08527 6.28970 6.34124 6.38772 6.48102 6.56628 6.77356 6.79220 6.81243 6.97681 7.08903 7.33138 7.37834 7.50953 7.61760 7.91288 7.97212 8.22522 8.39099 9.10976 9.57028 9.99771 10.68164 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008587 B = 0.005575 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3259.962979 B = 5021.390594 C = 6057.793436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.504 6.504 5 C -0.125 4.125 6 C 0.132 3.868 7 N -0.440 5.440 8 C -0.342 4.342 9 H 0.089 0.911 10 C 0.044 3.956 11 N -0.850 5.850 12 Si 0.906 3.094 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.280 1.280 16 C 0.505 3.495 17 O -0.590 6.590 18 C -0.061 4.061 19 H 0.102 0.898 20 C 0.089 3.911 21 N -0.838 5.838 22 C -0.055 4.055 23 C -0.107 4.107 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.108 4.108 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.113 0.887 34 H 0.063 0.937 35 H 0.269 0.731 36 H 0.020 0.980 37 H 0.077 0.923 38 H 0.339 0.661 39 H 0.335 0.665 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.759 -8.914 -2.665 10.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.164 4.164 6 C 0.008 3.992 7 N -0.159 5.159 8 C -0.469 4.469 9 H 0.107 0.893 10 C -0.163 4.163 11 N -0.486 5.486 12 Si 0.732 3.268 13 H -0.191 1.191 14 H -0.207 1.207 15 H -0.206 1.206 16 C 0.294 3.706 17 O -0.474 6.474 18 C -0.083 4.083 19 H 0.120 0.880 20 C -0.042 4.042 21 N -0.367 5.367 22 C -0.057 4.057 23 C -0.125 4.125 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.126 4.126 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.343 -8.728 -3.003 9.817 hybrid contribution 0.985 0.134 1.084 1.471 sum 4.328 -8.594 -1.919 9.812 Atomic orbital electron populations 1.23160 0.77452 1.02971 1.02324 1.86545 1.22691 1.34503 1.84702 1.24098 0.92412 0.80862 0.71742 1.90650 1.67246 1.36202 1.44987 1.21939 0.85762 1.03695 1.04981 1.21087 0.82522 0.90345 1.05272 1.43273 1.04092 1.63237 1.05254 1.19378 1.06811 1.29171 0.91570 0.89294 1.25357 0.97040 0.93697 1.00175 1.69956 1.28035 1.17238 1.33324 0.86216 0.78910 0.78405 0.83238 1.19127 1.20742 1.20564 1.19784 0.87970 0.79154 0.83710 1.90503 1.70103 1.55413 1.31365 1.20182 0.95769 0.92115 1.00214 0.87976 1.21561 0.95409 0.89202 0.98042 1.58417 1.68445 1.02647 1.07185 1.19600 0.96586 0.94967 0.94508 1.21118 0.97767 0.95819 0.97821 1.21051 1.00746 0.93862 0.98551 1.21042 0.99524 0.99269 0.95004 1.21075 0.98847 0.95674 0.98635 1.21186 0.99112 0.93364 0.98910 0.92184 0.88671 0.92192 0.88632 0.87987 0.86879 0.91812 0.92058 0.96183 0.90468 0.84897 0.85297 0.85930 0.86502 0.86749 0.86563 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -6.22 10.57 -39.25 -0.41 -6.63 16 3 C 0.47 9.28 7.96 36.00 0.29 9.57 16 4 O -0.50 -11.32 15.73 -18.75 -0.29 -11.62 16 5 C -0.12 -2.57 6.09 -27.88 -0.17 -2.74 16 6 C 0.13 3.23 4.22 -4.04 -0.02 3.22 16 7 N -0.44 -10.77 2.54 -114.80 -0.29 -11.06 16 8 C -0.34 -8.29 8.30 -14.93 -0.12 -8.42 16 9 H 0.09 2.05 6.55 -52.48 -0.34 1.70 16 10 C 0.04 1.09 4.94 -17.47 -0.09 1.00 16 11 N -0.85 -22.55 11.41 55.50 0.63 -21.92 16 12 Si 0.91 19.03 29.60 -169.99 -5.03 14.00 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 15 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 16 C 0.51 11.81 5.92 -10.98 -0.07 11.75 16 17 O -0.59 -15.07 15.42 5.55 0.09 -14.98 16 18 C -0.06 -1.18 1.91 -92.92 -0.18 -1.35 16 19 H 0.10 2.02 6.20 -51.93 -0.32 1.70 16 20 C 0.09 1.52 5.64 -3.83 -0.02 1.50 16 21 N -0.84 -14.32 9.25 -10.37 -0.10 -14.41 16 22 C -0.06 -0.96 4.77 -104.62 -0.50 -1.46 16 23 C -0.11 -1.69 9.40 -39.58 -0.37 -2.06 16 24 C -0.12 -1.71 10.05 -39.58 -0.40 -2.10 16 25 C -0.13 -1.71 10.05 -39.58 -0.40 -2.11 16 26 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 27 C -0.11 -1.79 8.84 -39.58 -0.35 -2.14 16 28 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 32 H 0.10 2.00 8.14 -51.93 -0.42 1.58 16 33 H 0.11 3.01 5.44 -51.93 -0.28 2.73 16 34 H 0.06 1.70 7.48 -51.92 -0.39 1.31 16 35 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 36 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 1.39 7.10 -51.93 -0.37 1.02 16 38 H 0.34 5.43 9.06 -39.29 -0.36 5.08 16 39 H 0.34 4.75 9.08 -39.29 -0.36 4.40 16 40 H 0.12 1.83 7.89 -52.49 -0.41 1.42 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.13 2.21 7.24 -52.49 -0.38 1.83 16 LS Contribution 371.87 15.07 5.60 5.60 Total: -1.00 -31.07 371.87 -7.68 -38.75 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -6.15 Total: 18.26 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -1.72 Total: 4.01 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.25 Total: -47.39 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.62 Total: -33.23 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.07 -7.68 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578805207.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.178 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds