Wall clock time and date at job start Tue Mar 31 2020 12:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48494 * 109.47148 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46691 * 299.99905 * 3 2 1 6 6 H 1.48501 * 109.47383 * 59.99556 * 3 2 1 7 7 C 1.37879 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99608 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46813 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46862 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47081 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46678 * 304.99837 * 12 11 10 14 14 N 1.46901 * 109.47205 * 64.99616 * 12 11 10 15 15 C 1.50695 * 109.47002 * 184.99964 * 12 11 10 16 16 O 1.21264 * 119.99654 * 259.99602 * 15 12 11 17 17 N 1.34774 * 120.00154 * 79.99884 * 15 12 11 18 18 C 1.38933 * 120.00077 * 179.97438 * 17 15 12 19 19 N 1.32422 * 119.20531 * 359.97438 * 18 17 15 20 20 C 1.32238 * 120.69808 * 180.12642 * 19 18 17 21 21 C 1.38779 * 119.14769 * 359.97438 * 20 19 18 22 22 C 1.38062 * 118.65996 * 359.83918 * 21 20 19 23 23 N 1.32353 * 119.20581 * 179.97438 * 18 17 15 24 24 C 1.50576 * 121.33644 * 180.52582 * 22 21 20 25 25 C 1.53035 * 109.64615 * 342.92434 * 24 22 21 26 26 O 1.42927 * 108.55332 * 49.15008 * 25 24 22 27 27 C 1.42812 * 113.40738 * 289.37470 * 26 25 24 28 28 H 0.97003 * 119.99803 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47347 * 59.99505 * 9 7 2 30 30 H 1.08993 * 109.47389 * 299.99540 * 9 7 2 31 31 H 1.08992 * 109.46861 * 60.00102 * 10 9 7 32 32 H 1.08994 * 109.47173 * 299.99613 * 10 9 7 33 33 H 1.08996 * 109.47116 * 59.99889 * 11 10 9 34 34 H 1.09004 * 109.46962 * 299.99619 * 11 10 9 35 35 H 1.00893 * 110.99722 * 60.00135 * 14 12 11 36 36 H 1.00895 * 110.99471 * 183.95651 * 14 12 11 37 37 H 0.97001 * 119.99922 * 0.02562 * 17 15 12 38 38 H 1.08000 * 120.43065 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.44027 * 102.97243 * 24 22 21 40 40 H 1.08996 * 109.44678 * 222.86309 * 24 22 21 41 41 H 1.09005 * 109.61531 * 168.92541 * 25 24 22 42 42 H 1.09003 * 109.61418 * 289.26990 * 25 24 22 43 43 H 1.09002 * 109.36084 * 291.41523 * 27 26 25 44 44 H 1.08998 * 109.35690 * 171.68851 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 6 2.4745 -6.1501 0.0005 13 1 3.1592 -6.0431 -0.8408 14 7 3.2367 -6.1419 1.2563 15 6 1.7251 -7.4516 -0.1239 16 8 1.5122 -8.1252 0.8617 17 7 1.2917 -7.8669 -1.3306 18 6 0.6013 -9.0671 -1.4454 19 7 0.3783 -9.7907 -0.3590 20 6 -0.2735 -10.9388 -0.4346 21 6 -0.7244 -11.3799 -1.6707 22 6 -0.4784 -10.5992 -2.7825 23 7 0.1823 -9.4596 -2.6379 24 6 -0.9506 -11.0140 -4.1508 25 6 -1.2979 -12.5044 -4.1453 26 8 -2.1421 -12.7705 -3.0230 27 6 -1.4628 -12.6863 -1.7696 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6241 -2.5568 0.8903 31 1 2.8719 -3.6043 0.8905 32 1 2.8719 -3.6044 -0.8894 33 1 0.8539 -5.0445 -0.8903 34 1 0.8533 -5.0451 0.8897 35 1 2.6239 -6.2398 2.0518 36 1 3.9444 -6.8611 1.2542 37 1 1.4624 -7.3282 -2.1190 38 1 -0.4526 -11.5257 0.4541 39 1 -1.8349 -10.4365 -4.4200 40 1 -0.1611 -10.8281 -4.8790 41 1 -1.8204 -12.7618 -5.0667 42 1 -0.3838 -13.0929 -4.0665 43 1 -0.7532 -13.5095 -1.6871 44 1 -2.1894 -12.7529 -0.9598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:13 Heat of formation + Delta-G solvation = -56.916460 kcal Electronic energy + Delta-G solvation = -25957.525700 eV Core-core repulsion = 22101.860164 eV Total energy + Delta-G solvation = -3855.665536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.72598 -41.19812 -39.43549 -37.25452 -36.26944 -35.47951 -35.24872 -33.16545 -32.90290 -32.18696 -29.68974 -27.69425 -26.45622 -26.05000 -24.54348 -24.19778 -22.47113 -21.70809 -21.21031 -19.65841 -18.83580 -18.45195 -17.89303 -17.71149 -17.26505 -16.88266 -16.59655 -16.47368 -16.19587 -15.90186 -15.62415 -15.31231 -15.20174 -14.77457 -14.58966 -14.40892 -14.30749 -13.79478 -13.66604 -13.18287 -13.11153 -12.88159 -12.64438 -12.52772 -12.33198 -12.22126 -12.15815 -11.80715 -11.56569 -11.46122 -11.39836 -11.23523 -11.00249 -10.78903 -10.53137 -10.25852 -9.79232 -9.67304 -8.17533 -6.27876 -0.33184 -0.04861 1.30259 1.38983 1.41161 1.41669 1.55294 2.43112 2.62122 2.75708 2.98688 3.10218 3.15735 3.35899 3.45822 3.61773 3.73515 3.86762 3.93004 4.03781 4.09672 4.19055 4.42857 4.47568 4.48438 4.61439 4.63389 4.69262 4.82677 4.89119 4.92174 4.97751 5.11280 5.25012 5.33894 5.34833 5.60899 5.76061 5.83691 5.89236 5.93585 6.02805 6.07541 6.29765 6.41926 6.78899 6.90488 7.08105 7.41291 8.94558 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022586 B = 0.002121 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.382654 B =13195.954187 C =13927.253208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.020 3.980 10 C -0.083 4.083 11 C -0.096 4.096 12 C 0.098 3.902 13 H 0.132 0.868 14 N -0.812 5.812 15 C 0.484 3.516 16 O -0.506 6.506 17 N -0.633 5.633 18 C 0.516 3.484 19 N -0.538 5.538 20 C 0.177 3.823 21 C -0.260 4.260 22 C 0.197 3.803 23 N -0.558 5.558 24 C -0.105 4.105 25 C 0.061 3.939 26 O -0.389 6.389 27 C 0.119 3.881 28 H 0.262 0.738 29 H -0.009 1.009 30 H -0.016 1.016 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.348 0.652 36 H 0.352 0.648 37 H 0.435 0.565 38 H 0.203 0.797 39 H 0.102 0.898 40 H 0.113 0.887 41 H 0.132 0.868 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -30.582 -8.491 31.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.080 0.920 9 C -0.017 4.017 10 C -0.120 4.120 11 C -0.135 4.135 12 C -0.019 4.019 13 H 0.150 0.850 14 N -0.341 5.341 15 C 0.268 3.732 16 O -0.376 6.376 17 N -0.284 5.284 18 C 0.160 3.840 19 N -0.258 5.258 20 C 0.010 3.990 21 C -0.266 4.266 22 C 0.051 3.949 23 N -0.279 5.279 24 C -0.143 4.143 25 C -0.016 4.016 26 O -0.307 6.307 27 C 0.041 3.959 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.002 0.998 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.275 0.725 38 H 0.219 0.781 39 H 0.120 0.880 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.573 -29.268 -7.845 30.307 hybrid contribution -0.447 -0.011 -0.083 0.455 sum 0.127 -29.279 -7.927 30.333 Atomic orbital electron populations 1.70116 1.07857 1.27557 1.52216 1.26020 0.95771 1.03480 0.94986 0.85399 0.79202 0.78795 0.77651 1.18386 1.20378 1.20645 1.21766 0.93638 0.92355 1.49692 0.91996 1.19073 0.94626 0.93612 0.94422 1.21280 0.97502 0.91663 1.01604 1.21496 0.96718 0.93406 1.01852 1.21667 0.95323 0.88010 0.96870 0.85010 1.59064 1.17351 1.54806 1.02869 1.23111 0.78945 0.89278 0.81828 1.90768 1.53721 1.56309 1.36767 1.43530 1.53250 1.18733 1.12931 1.19804 0.90335 0.88338 0.85507 1.68490 1.18345 1.08291 1.30700 1.23650 0.87447 0.89611 0.98303 1.22027 1.06428 1.02989 0.95118 1.21537 0.88515 0.87177 0.97699 1.67788 1.16844 1.18605 1.24661 1.21275 1.03369 0.99197 0.90458 1.22826 0.96129 0.91959 0.90638 1.88030 1.37241 1.90755 1.14682 1.21404 0.96554 0.90407 0.87518 0.92930 0.99075 0.99791 0.92144 0.92251 0.91103 0.93346 0.83771 0.83418 0.72505 0.78078 0.88018 0.86890 0.85064 0.91069 0.88996 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.17 13.29 21.45 0.28 -57.88 16 2 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 3 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 4 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 7 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.08 -3.31 5.04 30.60 0.15 -3.16 16 11 C -0.10 -3.13 4.84 30.60 0.15 -2.98 16 12 C 0.10 2.48 3.15 44.17 0.14 2.62 16 13 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 14 N -0.81 -20.57 8.44 -171.80 -1.45 -22.02 16 15 C 0.48 13.38 7.03 87.66 0.62 14.00 16 16 O -0.51 -17.02 14.45 -2.98 -0.04 -17.06 16 17 N -0.63 -15.90 5.40 -313.70 -1.69 -17.60 16 18 C 0.52 14.30 8.38 261.31 2.19 16.49 16 19 N -0.54 -15.26 7.88 -197.60 -1.56 -16.81 16 20 C 0.18 3.51 10.98 84.76 0.93 4.44 16 21 C -0.26 -4.35 5.80 -19.88 -0.12 -4.47 16 22 C 0.20 3.84 6.68 42.37 0.28 4.12 16 23 N -0.56 -13.73 10.38 -186.15 -1.93 -15.66 16 24 C -0.11 -1.26 6.27 29.82 0.19 -1.08 16 25 C 0.06 0.49 6.84 71.99 0.49 0.98 16 26 O -0.39 -4.88 10.77 -148.98 -1.61 -6.49 16 27 C 0.12 1.18 6.72 71.14 0.48 1.66 16 28 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 29 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 30 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H 0.06 2.47 7.75 -2.39 -0.02 2.45 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.35 9.45 8.58 -89.70 -0.77 8.68 16 36 H 0.35 7.50 9.06 -89.70 -0.81 6.69 16 37 H 0.43 8.65 8.81 -92.71 -0.82 7.83 16 38 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.07 0.41 8.08 -2.39 -0.02 0.39 16 43 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.13 0.84 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -79.39 368.70 -0.97 -80.36 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -1.35 Total: 22.91 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 6.35 Total: 3.29 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -6.35 Total: -129.98 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.65 Total: -23.54 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -79.39 -0.97 -80.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.440 kcal (2) G-P(sol) polarization free energy of solvation -79.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds