Wall clock time and date at job start Tue Mar 31 2020 12:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48500 * 109.46862 * 269.99759 * 3 2 1 5 5 H 1.48497 * 109.47072 * 29.99752 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99827 * 3 2 1 7 7 C 1.37884 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47669 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47669 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46766 * 54.99946 * 12 11 10 14 14 N 1.46898 * 109.46922 * 295.00407 * 12 11 10 15 15 C 1.50695 * 109.47316 * 174.99896 * 12 11 10 16 16 O 1.21264 * 119.99803 * 100.00080 * 15 12 11 17 17 N 1.34774 * 120.00368 * 280.00345 * 15 12 11 18 18 C 1.38935 * 120.00150 * 179.97438 * 17 15 12 19 19 N 1.32419 * 119.20567 * 0.02562 * 18 17 15 20 20 C 1.32235 * 120.69952 * 180.09145 * 19 18 17 21 21 C 1.38784 * 119.14362 * 0.02562 * 20 19 18 22 22 C 1.38062 * 118.66238 * 359.84557 * 21 20 19 23 23 N 1.32354 * 119.20283 * 179.97438 * 18 17 15 24 24 C 1.50579 * 121.33505 * 180.34737 * 22 21 20 25 25 C 1.53027 * 109.65497 * 343.01374 * 24 22 21 26 26 O 1.43201 * 108.60979 * 49.14914 * 25 24 22 27 27 C 1.42820 * 113.22933 * 289.41283 * 26 25 24 28 28 H 0.97000 * 119.99960 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47672 * 60.00122 * 9 7 2 30 30 H 1.08994 * 109.47477 * 299.99630 * 9 7 2 31 31 H 1.09004 * 109.47036 * 60.00075 * 10 9 7 32 32 H 1.09006 * 109.47301 * 300.00258 * 10 9 7 33 33 H 1.09004 * 109.46817 * 59.99958 * 11 10 9 34 34 H 1.09006 * 109.46984 * 300.00469 * 11 10 9 35 35 H 1.00905 * 110.99725 * 176.04452 * 14 12 11 36 36 H 1.00902 * 111.00117 * 299.99488 * 14 12 11 37 37 H 0.97006 * 119.99929 * 359.97438 * 17 15 12 38 38 H 1.08002 * 120.43281 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.43845 * 103.06722 * 24 22 21 40 40 H 1.09000 * 109.44029 * 222.95385 * 24 22 21 41 41 H 1.09002 * 109.61468 * 168.88960 * 25 24 22 42 42 H 1.09000 * 109.61521 * 289.24109 * 25 24 22 43 43 H 1.08999 * 109.35520 * 171.72760 * 27 26 25 44 44 H 1.09002 * 109.36035 * 291.45598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4742 -6.1502 0.0018 13 1 3.1583 -6.0429 0.8436 14 7 3.2374 -6.1426 -1.2533 15 6 1.7248 -7.4516 0.1263 16 8 1.5125 -8.1257 -0.8591 17 7 1.2903 -7.8664 1.3328 18 6 0.5989 -9.0660 1.4474 19 7 0.3759 -9.7896 0.3611 20 6 -0.2805 -10.9351 0.4359 21 6 -0.7364 -11.3734 1.6713 22 6 -0.4845 -10.5959 2.7840 23 7 0.1799 -9.4585 2.6400 24 6 -0.9446 -11.0175 4.1544 25 6 -2.0167 -12.1020 4.0263 26 8 -1.5424 -13.1094 3.1260 27 6 -1.4897 -12.6714 1.7676 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 2.8717 -3.6045 0.8906 32 1 2.8718 -3.6045 -0.8895 33 1 0.8531 -5.0451 -0.8886 34 1 0.8536 -5.0446 0.8914 35 1 3.9451 -6.8619 -1.2505 36 1 2.6252 -6.2408 -2.0494 37 1 1.4604 -7.3273 2.1212 38 1 -0.4597 -11.5220 -0.4528 39 1 -0.0973 -11.4097 4.7169 40 1 -1.3601 -10.1567 4.6784 41 1 -2.2075 -12.5451 5.0038 42 1 -2.9359 -11.6637 3.6376 43 1 -0.9869 -13.4267 1.1637 44 1 -2.5038 -12.5270 1.3950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580050894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:17 Heat of formation + Delta-G solvation = -31.445101 kcal Electronic energy + Delta-G solvation = -25958.126459 eV Core-core repulsion = 22103.565445 eV Total energy + Delta-G solvation = -3854.561015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.89766 -40.22089 -38.76977 -35.93177 -35.26466 -34.68897 -33.37541 -32.12894 -31.60414 -31.38961 -28.17048 -26.57748 -25.62808 -24.91529 -23.67827 -22.87231 -21.46583 -20.26739 -20.05663 -18.74159 -17.97837 -17.15993 -16.91299 -16.39699 -16.33483 -15.90425 -15.62055 -15.57653 -15.02303 -14.56945 -14.45547 -14.41878 -14.13061 -13.98165 -13.82392 -13.14742 -13.06042 -12.56522 -12.41469 -12.01782 -11.79034 -11.57182 -11.48003 -11.18915 -11.02531 -10.76912 -10.69662 -10.65005 -10.44515 -10.39056 -10.19065 -9.63906 -9.37974 -9.24717 -9.06627 -8.85344 -8.68479 -8.30342 -5.95884 -3.97560 0.51046 0.74739 2.27207 2.37799 3.25399 3.34901 3.40852 3.44417 3.49919 3.64604 3.94385 4.06336 4.23002 4.40598 4.49303 4.51206 4.57459 4.63754 4.76451 4.87837 5.01633 5.06399 5.09963 5.15009 5.29297 5.37143 5.40016 5.46281 5.66995 5.86286 6.04405 6.18397 6.38506 6.49445 6.64132 6.75244 6.78290 6.97469 7.05897 7.21797 7.41915 7.73741 7.78357 7.88692 7.98112 8.05414 8.48497 9.10095 9.66228 11.15574 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.002127 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.702957 B =13162.851132 C =13937.878087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.105 4.105 12 C 0.084 3.916 13 H 0.106 0.894 14 N -0.807 5.807 15 C 0.478 3.522 16 O -0.475 6.475 17 N -0.639 5.639 18 C 0.542 3.458 19 N -0.502 5.502 20 C 0.189 3.811 21 C -0.272 4.272 22 C 0.217 3.783 23 N -0.548 5.548 24 C -0.107 4.107 25 C 0.060 3.940 26 O -0.373 6.373 27 C 0.119 3.881 28 H 0.259 0.741 29 H 0.014 0.986 30 H 0.012 0.988 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.340 0.660 36 H 0.352 0.648 37 H 0.426 0.574 38 H 0.174 0.826 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.592 -28.084 7.129 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.144 4.144 12 C -0.032 4.032 13 H 0.124 0.876 14 N -0.336 5.336 15 C 0.262 3.738 16 O -0.343 6.343 17 N -0.289 5.289 18 C 0.187 3.813 19 N -0.222 5.222 20 C 0.020 3.980 21 C -0.278 4.278 22 C 0.070 3.930 23 N -0.268 5.268 24 C -0.145 4.145 25 C -0.017 4.017 26 O -0.291 6.291 27 C 0.041 3.959 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.152 0.848 36 H 0.167 0.833 37 H 0.264 0.736 38 H 0.191 0.809 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.009 -26.877 6.499 27.725 hybrid contribution -0.411 -0.163 0.300 0.534 sum -2.420 -27.040 6.799 27.986 Atomic orbital electron populations 1.69966 1.06066 1.26484 1.51201 1.25040 0.94839 0.99260 0.95493 0.86605 0.79837 0.83539 0.78083 1.20701 1.21333 1.19879 1.21271 0.93080 0.91056 1.50062 0.92619 1.19124 0.94103 0.91627 0.96967 1.21546 0.98788 0.92079 1.01312 1.21704 0.96503 0.93950 1.02208 1.21837 0.95834 0.89704 0.95828 0.87595 1.59057 1.17197 1.54220 1.03102 1.23141 0.79389 0.89403 0.81867 1.90787 1.52515 1.55258 1.35710 1.43678 1.53543 1.18681 1.13010 1.19625 0.89044 0.87748 0.84894 1.68529 1.16900 1.06755 1.29977 1.23094 0.87907 0.90362 0.96595 1.21659 1.08056 1.02049 0.96050 1.20833 0.89169 0.87279 0.95684 1.67744 1.16275 1.17612 1.25205 1.21139 1.00950 1.00401 0.91990 1.22696 0.95084 0.88890 0.95056 1.88102 1.86777 1.37408 1.16810 1.21186 0.98658 0.91887 0.84210 0.93103 0.96778 0.96928 0.93515 0.91702 0.91696 0.91797 0.84752 0.83321 0.73569 0.80935 0.88058 0.87857 0.87322 0.92112 0.87312 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.48 4.97 -27.88 -0.14 0.35 16 10 C -0.10 -1.99 5.04 -26.73 -0.13 -2.12 16 11 C -0.11 -1.70 4.84 -26.73 -0.13 -1.83 16 12 C 0.08 1.11 3.15 -68.87 -0.22 0.89 16 13 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 14 N -0.81 -10.54 8.44 -5.66 -0.05 -10.58 16 15 C 0.48 6.63 7.03 -10.99 -0.08 6.56 16 16 O -0.48 -7.90 14.45 5.57 0.08 -7.82 16 17 N -0.64 -8.03 5.40 -13.08 -0.07 -8.10 16 18 C 0.54 7.47 8.38 -322.31 -2.70 4.77 16 19 N -0.50 -7.09 7.88 -13.81 -0.11 -7.20 16 20 C 0.19 1.95 10.98 -17.18 -0.19 1.76 16 21 C -0.27 -2.47 5.81 -104.64 -0.61 -3.08 16 22 C 0.22 2.22 6.68 -82.42 -0.55 1.67 16 23 N -0.55 -6.79 10.38 -10.19 -0.11 -6.90 16 24 C -0.11 -0.73 6.27 -27.93 -0.18 -0.90 16 25 C 0.06 0.32 6.84 37.17 0.25 0.58 16 26 O -0.37 -2.78 10.80 -35.23 -0.38 -3.16 16 27 C 0.12 0.74 6.71 35.85 0.24 0.98 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 1.33 7.75 -51.93 -0.40 0.93 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.34 3.83 9.06 -39.29 -0.36 3.47 16 36 H 0.35 4.78 8.58 -39.29 -0.34 4.44 16 37 H 0.43 4.30 8.81 -40.82 -0.36 3.94 16 38 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 43 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -35.93 368.72 -10.69 -46.61 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.49 Total: 5.21 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -4.84 Total: -3.93 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.40 Total: -59.33 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -0.30 Total: -10.98 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.93 -10.69 -46.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.166 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds