Wall clock time and date at job start Tue Mar 31 2020 12:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48500 * 109.46862 * 269.99759 * 3 2 1 5 5 H 1.48497 * 109.47072 * 29.99752 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99827 * 3 2 1 7 7 C 1.37884 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00025 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47669 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47669 * 180.02562 * 11 10 9 13 13 H 1.08999 * 109.46766 * 54.99946 * 12 11 10 14 14 N 1.46898 * 109.46922 * 295.00407 * 12 11 10 15 15 C 1.50695 * 109.47316 * 174.99896 * 12 11 10 16 16 O 1.21264 * 119.99803 * 100.00080 * 15 12 11 17 17 N 1.34774 * 120.00368 * 280.00345 * 15 12 11 18 18 C 1.38935 * 120.00150 * 179.97438 * 17 15 12 19 19 N 1.32419 * 119.20567 * 0.02562 * 18 17 15 20 20 C 1.32235 * 120.69952 * 180.09145 * 19 18 17 21 21 C 1.38784 * 119.14362 * 0.02562 * 20 19 18 22 22 C 1.38062 * 118.66238 * 359.84557 * 21 20 19 23 23 N 1.32354 * 119.20283 * 179.97438 * 18 17 15 24 24 C 1.50579 * 121.33505 * 180.34737 * 22 21 20 25 25 C 1.53027 * 109.65497 * 343.01374 * 24 22 21 26 26 O 1.43201 * 108.60979 * 49.14914 * 25 24 22 27 27 C 1.42820 * 113.22933 * 289.41283 * 26 25 24 28 28 H 0.97000 * 119.99960 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47672 * 60.00122 * 9 7 2 30 30 H 1.08994 * 109.47477 * 299.99630 * 9 7 2 31 31 H 1.09004 * 109.47036 * 60.00075 * 10 9 7 32 32 H 1.09006 * 109.47301 * 300.00258 * 10 9 7 33 33 H 1.09004 * 109.46817 * 59.99958 * 11 10 9 34 34 H 1.09006 * 109.46984 * 300.00469 * 11 10 9 35 35 H 1.00905 * 110.99725 * 176.04452 * 14 12 11 36 36 H 1.00902 * 111.00117 * 299.99488 * 14 12 11 37 37 H 0.97006 * 119.99929 * 359.97438 * 17 15 12 38 38 H 1.08002 * 120.43281 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.43845 * 103.06722 * 24 22 21 40 40 H 1.09000 * 109.44029 * 222.95385 * 24 22 21 41 41 H 1.09002 * 109.61468 * 168.88960 * 25 24 22 42 42 H 1.09000 * 109.61521 * 289.24109 * 25 24 22 43 43 H 1.08999 * 109.35520 * 171.72760 * 27 26 25 44 44 H 1.09002 * 109.36035 * 291.45598 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 6 2.4742 -6.1502 0.0018 13 1 3.1583 -6.0429 0.8436 14 7 3.2374 -6.1426 -1.2533 15 6 1.7248 -7.4516 0.1263 16 8 1.5125 -8.1257 -0.8591 17 7 1.2903 -7.8664 1.3328 18 6 0.5989 -9.0660 1.4474 19 7 0.3759 -9.7896 0.3611 20 6 -0.2805 -10.9351 0.4359 21 6 -0.7364 -11.3734 1.6713 22 6 -0.4845 -10.5959 2.7840 23 7 0.1799 -9.4585 2.6400 24 6 -0.9446 -11.0175 4.1544 25 6 -2.0167 -12.1020 4.0263 26 8 -1.5424 -13.1094 3.1260 27 6 -1.4897 -12.6714 1.7676 28 1 -0.4850 0.8400 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6239 -2.5567 0.8903 31 1 2.8717 -3.6045 0.8906 32 1 2.8718 -3.6045 -0.8895 33 1 0.8531 -5.0451 -0.8886 34 1 0.8536 -5.0446 0.8914 35 1 3.9451 -6.8619 -1.2505 36 1 2.6252 -6.2408 -2.0494 37 1 1.4604 -7.3273 2.1212 38 1 -0.4597 -11.5220 -0.4528 39 1 -0.0973 -11.4097 4.7169 40 1 -1.3601 -10.1567 4.6784 41 1 -2.2075 -12.5451 5.0038 42 1 -2.9359 -11.6637 3.6376 43 1 -0.9869 -13.4267 1.1637 44 1 -2.5038 -12.5270 1.3950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050894.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:16 Heat of formation + Delta-G solvation = -56.881274 kcal Electronic energy + Delta-G solvation = -25959.229455 eV Core-core repulsion = 22103.565445 eV Total energy + Delta-G solvation = -3855.664010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72490 -41.19554 -39.41730 -37.25278 -36.26715 -35.48023 -35.24768 -33.16421 -32.90045 -32.18723 -29.68797 -27.69311 -26.45058 -26.05197 -24.54143 -24.19699 -22.47160 -21.70692 -21.20951 -19.65620 -18.83803 -18.44656 -17.88918 -17.71218 -17.15707 -17.07254 -16.47787 -16.40649 -16.26869 -15.97440 -15.54322 -15.33284 -15.19829 -14.80516 -14.56084 -14.40389 -14.30565 -13.79848 -13.67062 -13.17928 -13.10314 -12.87602 -12.64586 -12.51773 -12.36244 -12.21625 -12.15284 -11.81454 -11.55540 -11.47679 -11.39474 -11.23999 -11.00530 -10.79852 -10.52345 -10.25941 -9.79281 -9.67306 -8.17295 -6.27612 -0.33163 -0.04861 1.30638 1.38620 1.41474 1.42903 1.54022 2.43277 2.62236 2.75336 2.98449 3.10146 3.15929 3.35570 3.45822 3.61642 3.73422 3.86486 3.93189 4.03509 4.09667 4.18759 4.42762 4.47506 4.48521 4.61538 4.63539 4.69188 4.82460 4.89329 4.91713 4.97312 5.11486 5.25057 5.33961 5.34770 5.60839 5.76027 5.83864 5.89137 5.93695 6.02758 6.05019 6.29994 6.41666 6.78895 6.90484 7.08097 7.41438 8.94597 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022526 B = 0.002127 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.702957 B =13162.851132 C =13937.878087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.020 3.980 10 C -0.083 4.083 11 C -0.096 4.096 12 C 0.097 3.903 13 H 0.132 0.868 14 N -0.812 5.812 15 C 0.484 3.516 16 O -0.506 6.506 17 N -0.633 5.633 18 C 0.516 3.484 19 N -0.538 5.538 20 C 0.177 3.823 21 C -0.259 4.259 22 C 0.197 3.803 23 N -0.558 5.558 24 C -0.104 4.104 25 C 0.060 3.940 26 O -0.387 6.387 27 C 0.118 3.882 28 H 0.262 0.738 29 H -0.016 1.016 30 H -0.009 1.009 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.352 0.648 36 H 0.348 0.652 37 H 0.435 0.565 38 H 0.203 0.797 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.068 0.932 43 H 0.129 0.871 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 -29.278 8.124 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.017 4.017 10 C -0.121 4.121 11 C -0.134 4.134 12 C -0.019 4.019 13 H 0.149 0.851 14 N -0.341 5.341 15 C 0.268 3.732 16 O -0.376 6.376 17 N -0.284 5.284 18 C 0.160 3.840 19 N -0.258 5.258 20 C 0.010 3.990 21 C -0.266 4.266 22 C 0.051 3.949 23 N -0.279 5.279 24 C -0.142 4.142 25 C -0.017 4.017 26 O -0.305 6.305 27 C 0.041 3.959 28 H 0.071 0.929 29 H 0.002 0.998 30 H 0.010 0.990 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.275 0.725 38 H 0.219 0.781 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.147 0.853 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.475 -28.107 7.526 29.135 hybrid contribution -0.661 0.112 0.029 0.671 sum -2.136 -27.996 7.554 29.076 Atomic orbital electron populations 1.70105 1.07844 1.27621 1.52135 1.26012 0.95769 1.03448 0.94969 0.85455 0.78757 0.78485 0.78402 1.19995 1.20858 1.18510 1.21737 0.93630 0.92379 1.49827 0.92024 1.19064 0.94614 0.93569 0.94431 1.21283 0.97515 0.91694 1.01583 1.21494 0.96701 0.93354 1.01881 1.21669 0.95323 0.88041 0.96859 0.85060 1.59070 1.17348 1.54796 1.02886 1.23109 0.78942 0.89280 0.81827 1.90768 1.53739 1.56277 1.36782 1.43532 1.53211 1.18757 1.12946 1.19804 0.90327 0.88327 0.85520 1.68488 1.18323 1.08303 1.30709 1.23649 0.87333 0.89708 0.98313 1.22023 1.06652 1.02692 0.95187 1.21539 0.88861 0.86876 0.97665 1.67788 1.16779 1.18699 1.24625 1.21260 1.01592 1.01183 0.90159 1.22866 0.94550 0.88274 0.95989 1.88094 1.86947 1.38132 1.17341 1.21393 0.99423 0.90776 0.84342 0.92922 0.99795 0.99034 0.92289 0.92165 0.93304 0.91062 0.83437 0.83762 0.72503 0.78074 0.87592 0.87141 0.84959 0.91384 0.85342 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.96 13.29 21.45 0.28 -57.68 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.54 -30.91 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.08 -3.31 5.04 30.59 0.15 -3.16 16 11 C -0.10 -3.10 4.84 30.59 0.15 -2.95 16 12 C 0.10 2.47 3.15 44.17 0.14 2.61 16 13 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 14 N -0.81 -20.62 8.44 -171.81 -1.45 -22.07 16 15 C 0.48 13.38 7.03 87.66 0.62 14.00 16 16 O -0.51 -17.01 14.45 -2.98 -0.04 -17.06 16 17 N -0.63 -15.90 5.40 -313.70 -1.69 -17.59 16 18 C 0.52 14.30 8.38 261.31 2.19 16.49 16 19 N -0.54 -15.25 7.88 -197.59 -1.56 -16.81 16 20 C 0.18 3.51 10.98 84.76 0.93 4.44 16 21 C -0.26 -4.36 5.81 -19.87 -0.12 -4.47 16 22 C 0.20 3.83 6.68 42.38 0.28 4.11 16 23 N -0.56 -13.72 10.38 -186.14 -1.93 -15.65 16 24 C -0.10 -1.25 6.27 29.82 0.19 -1.06 16 25 C 0.06 0.50 6.84 71.99 0.49 0.99 16 26 O -0.39 -4.77 10.80 -148.98 -1.61 -6.38 16 27 C 0.12 1.19 6.71 71.14 0.48 1.66 16 28 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 29 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.06 2.46 7.75 -2.38 -0.02 2.44 16 33 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.35 7.55 9.06 -89.69 -0.81 6.74 16 36 H 0.35 9.45 8.58 -89.69 -0.77 8.68 16 37 H 0.43 8.65 8.81 -92.70 -0.82 7.83 16 38 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 0.48 8.08 -2.39 -0.02 0.46 16 43 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -78.90 368.72 -0.97 -79.87 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -1.35 Total: 23.12 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 6.35 Total: 3.39 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -6.35 Total: -129.80 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -1.65 Total: -23.43 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -78.90 -0.97 -79.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050894.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.989 kcal (2) G-P(sol) polarization free energy of solvation -78.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds