Wall clock time and date at job start Tue Mar 31 2020 12:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86809 * 119.99910 * 2 1 4 4 H 1.48493 * 109.46979 * 265.00336 * 3 2 1 5 5 H 1.48497 * 109.47012 * 25.00368 * 3 2 1 6 6 H 1.48500 * 109.46981 * 145.00210 * 3 2 1 7 7 C 1.40025 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99864 * 185.30315 * 7 2 1 9 9 C 1.41325 * 119.99993 * 5.29986 * 7 2 1 10 10 C 1.40612 * 119.78900 * 185.57955 * 9 7 2 11 11 C 1.38315 * 119.13057 * 180.29698 * 10 9 7 12 12 C 1.38684 * 118.66729 * 359.44029 * 11 10 9 13 13 C 1.39639 * 119.49739 * 0.27868 * 12 11 10 14 14 N 1.39253 * 119.57086 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00160 * 339.03143 * 14 13 12 16 16 O 1.21569 * 120.00061 * 3.89184 * 15 14 13 17 17 N 1.34777 * 119.99827 * 183.89871 * 15 14 13 18 18 C 1.47516 * 118.75625 * 185.14086 * 17 15 14 19 19 C 1.53572 * 111.02736 * 138.35042 * 18 17 15 20 20 C 1.51537 * 109.58280 * 320.02436 * 19 18 17 21 21 O 1.42148 * 108.75893 * 91.40026 * 20 19 18 22 22 C 1.38018 * 119.44021 * 272.76858 * 21 20 19 23 23 H 1.08999 * 109.47209 * 303.43198 * 22 21 20 24 24 C 1.52992 * 109.47161 * 183.43390 * 22 21 20 25 25 N 1.46898 * 109.47369 * 64.99897 * 24 22 21 26 26 C 1.45118 * 118.76026 * 4.86911 * 17 15 14 27 27 N 1.31923 * 120.85179 * 0.02562 * 13 12 11 28 28 H 0.97001 * 119.99895 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.43352 * 0.02562 * 10 9 7 30 30 H 1.08002 * 120.66208 * 179.71752 * 11 10 9 31 31 H 1.08001 * 120.24713 * 180.29648 * 12 11 10 32 32 H 0.97002 * 119.99451 * 159.03079 * 14 13 12 33 33 H 1.08997 * 109.16791 * 258.74612 * 18 17 15 34 34 H 1.08994 * 109.16812 * 17.95086 * 18 17 15 35 35 H 1.08995 * 109.45628 * 80.05587 * 19 18 17 36 36 H 1.09000 * 109.45223 * 199.99217 * 19 18 17 37 37 H 1.09002 * 109.59170 * 211.18343 * 20 19 18 38 38 H 1.09000 * 109.58848 * 331.46766 * 20 19 18 39 39 H 1.09003 * 109.47159 * 185.00450 * 24 22 21 40 40 H 1.09003 * 109.47463 * 305.00191 * 24 22 21 41 41 H 1.00904 * 110.99904 * 179.97438 * 25 24 22 42 42 H 1.00895 * 111.00216 * 303.96096 * 25 24 22 43 43 H 1.09005 * 109.45864 * 29.32845 * 26 17 15 44 44 H 1.08999 * 109.46415 * 149.28604 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5945 1.9855 -1.3947 5 1 1.3900 2.6809 0.5918 6 1 3.4822 1.4730 0.8030 7 6 2.0075 -1.2127 -0.0005 8 1 3.0840 -1.2147 0.0859 9 6 1.3054 -2.4339 -0.1141 10 6 1.9984 -3.6517 0.0037 11 6 1.2988 -4.8388 -0.1159 12 6 -0.0692 -4.7855 -0.3371 13 6 -0.7014 -3.5445 -0.4388 14 7 -2.0749 -3.4892 -0.6614 15 6 -2.7154 -4.5511 -1.1890 16 8 -2.1079 -5.5817 -1.4048 17 7 -4.0295 -4.4704 -1.4775 18 6 -4.7290 -5.6817 -1.9459 19 6 -6.1144 -5.8045 -1.2948 20 6 -6.0293 -5.3952 0.1617 21 8 -6.3090 -4.0052 0.2631 22 6 -5.2825 -3.0942 0.1169 23 1 -4.4983 -3.3109 0.8422 24 6 -5.8179 -1.6805 0.3518 25 7 -6.2582 -1.5492 1.7471 26 6 -4.7042 -3.1965 -1.3099 27 7 -0.0140 -2.4240 -0.3277 28 1 -0.4850 0.8401 0.0004 29 1 3.0638 -3.6599 0.1808 30 1 1.8070 -5.7883 -0.0342 31 1 -0.6413 -5.6968 -0.4297 32 1 -2.5706 -2.6862 -0.4366 33 1 -4.8455 -5.6317 -3.0284 34 1 -4.1348 -6.5592 -1.6910 35 1 -6.8184 -5.1542 -1.8140 36 1 -6.4570 -6.8371 -1.3623 37 1 -6.7595 -5.9583 0.7429 38 1 -5.0272 -5.5971 0.5401 39 1 -5.0298 -0.9552 0.1497 40 1 -6.6610 -1.4959 -0.3140 41 1 -6.6160 -0.6232 1.9278 42 1 -6.9429 -2.2533 1.9781 43 1 -3.9932 -2.3855 -1.4679 44 1 -5.5136 -3.1160 -2.0354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:43 Heat of formation + Delta-G solvation = -10.673585 kcal Electronic energy + Delta-G solvation = -27930.928122 eV Core-core repulsion = 24077.267828 eV Total energy + Delta-G solvation = -3853.660294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.84979 -39.17160 -37.78969 -35.51228 -35.02490 -34.27729 -33.30040 -32.35721 -30.35985 -29.36272 -28.73994 -26.67989 -25.47371 -24.47080 -22.51290 -21.56095 -21.47284 -20.89156 -19.36733 -18.22534 -17.54039 -16.96256 -16.74465 -16.40838 -15.79818 -15.43624 -15.03208 -14.86926 -14.58925 -14.41208 -14.22968 -13.97391 -13.77649 -13.25567 -13.05450 -12.80480 -12.50517 -12.45361 -12.19532 -11.98218 -11.88116 -11.52196 -11.23470 -11.10646 -11.07659 -10.91419 -10.70171 -10.63678 -10.09143 -9.82830 -9.74632 -9.23543 -8.99932 -8.79710 -8.56066 -8.00344 -7.64499 -7.06522 -6.40975 -4.46864 2.64574 2.80316 2.97004 3.09839 3.12929 3.27525 3.46988 3.62125 3.96809 4.10044 4.38366 4.64253 4.79432 4.79910 4.81637 4.99578 5.04974 5.08714 5.20935 5.33408 5.44599 5.52239 5.62238 5.74008 5.77186 5.89065 5.93138 5.95642 6.18309 6.44615 6.47096 6.74771 6.84002 6.98039 6.99233 7.04735 7.20248 7.34529 7.45315 7.53116 7.62245 7.93469 8.05969 8.18633 8.40898 8.72695 8.88711 9.03656 10.07430 10.33589 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.004185 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.018524 B = 6688.608891 C = 8265.375574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.074 3.926 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.438 4.438 8 H 0.085 0.915 9 C 0.282 3.718 10 C -0.290 4.290 11 C -0.050 4.050 12 C -0.314 4.314 13 C 0.370 3.630 14 N -0.656 5.656 15 C 0.704 3.296 16 O -0.567 6.567 17 N -0.628 5.628 18 C 0.129 3.871 19 C -0.165 4.165 20 C 0.077 3.923 21 O -0.387 6.387 22 C 0.085 3.915 23 H 0.064 0.936 24 C 0.074 3.926 25 N -0.846 5.846 26 C 0.073 3.927 27 N -0.509 5.509 28 H 0.271 0.729 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.403 0.597 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.035 0.965 41 H 0.342 0.658 42 H 0.346 0.654 43 H 0.088 0.912 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 -3.553 -1.072 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.150 4.150 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.155 3.845 10 C -0.312 4.312 11 C -0.075 4.075 12 C -0.338 4.338 13 C 0.135 3.865 14 N -0.304 5.304 15 C 0.405 3.595 16 O -0.443 6.443 17 N -0.365 5.365 18 C 0.006 3.994 19 C -0.203 4.203 20 C 0.001 3.999 21 O -0.306 6.306 22 C 0.024 3.976 23 H 0.082 0.918 24 C -0.058 4.058 25 N -0.376 5.376 26 C -0.052 4.052 27 N -0.228 5.228 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.156 0.844 32 H 0.240 0.760 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.053 0.947 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.106 0.894 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.419 -3.454 -1.116 15.840 hybrid contribution -0.114 0.548 -0.437 0.710 sum -15.533 -2.906 -1.553 15.879 Atomic orbital electron populations 1.70080 1.07246 1.27546 1.29834 1.26001 0.94838 1.00910 0.93291 0.86371 0.80404 0.80832 0.79333 1.19423 1.20281 1.18642 1.19527 0.94532 0.89351 1.43588 0.89732 1.18146 0.86350 0.92078 0.87914 1.21718 0.99324 0.93524 1.16683 1.20830 0.93854 0.96599 0.96231 1.21823 0.95453 0.97935 1.18636 1.18229 0.82373 0.91087 0.94838 1.42456 1.07740 1.16692 1.63540 1.15842 0.81245 0.83963 0.78430 1.90782 1.64409 1.29879 1.59260 1.47071 1.07784 1.10548 1.71140 1.21644 0.92389 0.87402 0.97950 1.22503 0.97361 1.02919 0.97561 1.22144 1.01613 0.80779 0.95391 1.86153 1.36741 1.15528 1.92134 1.22103 0.90627 0.89308 0.95541 0.91789 1.21742 0.99994 0.94387 0.89641 1.58596 1.48187 1.08909 1.21951 1.22320 0.98543 0.86287 0.98071 1.67951 1.08421 1.24922 1.21482 0.91846 0.88291 0.88402 0.84405 0.76021 0.91910 0.88863 0.90455 0.89560 0.89267 0.92544 0.89064 0.94671 0.84551 0.84105 0.89409 0.89481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.85 11.51 55.55 0.64 -18.21 16 2 C 0.07 1.87 5.48 -17.35 -0.10 1.78 16 3 Si 0.91 18.56 29.56 -169.99 -5.03 13.53 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.44 -11.80 9.13 -37.74 -0.34 -12.14 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.28 7.86 6.53 -85.00 -0.56 7.31 16 10 C -0.29 -7.41 9.83 -38.66 -0.38 -7.79 16 11 C -0.05 -1.22 10.15 -39.39 -0.40 -1.62 16 12 C -0.31 -7.89 8.90 -38.89 -0.35 -8.23 16 13 C 0.37 9.40 7.51 -154.99 -1.16 8.24 16 14 N -0.66 -13.77 5.19 -15.79 -0.08 -13.85 16 15 C 0.70 13.54 8.11 -86.92 -0.71 12.84 16 16 O -0.57 -12.52 12.34 5.31 0.07 -12.46 16 17 N -0.63 -9.01 2.21 -178.54 -0.39 -9.40 16 18 C 0.13 1.51 6.13 -3.19 -0.02 1.49 16 19 C -0.16 -1.46 5.78 -27.17 -0.16 -1.62 16 20 C 0.08 0.79 6.37 36.42 0.23 1.02 16 21 O -0.39 -4.38 8.97 -26.55 -0.24 -4.62 16 22 C 0.08 1.01 2.76 -26.06 -0.07 0.94 16 23 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 24 C 0.07 0.77 6.48 -3.83 -0.02 0.75 16 25 N -0.85 -8.78 9.62 -10.37 -0.10 -8.88 16 26 C 0.07 0.88 4.48 -4.11 -0.02 0.86 16 27 N -0.51 -14.07 7.95 -10.26 -0.08 -14.15 16 28 H 0.27 6.35 8.29 -40.82 -0.34 6.02 16 29 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.14 3.44 5.16 -52.94 -0.27 3.17 16 32 H 0.40 7.77 6.52 -40.82 -0.27 7.50 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 1.23 7.06 -51.93 -0.37 0.86 16 35 H 0.08 0.66 8.01 -51.93 -0.42 0.25 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.71 7.41 -51.93 -0.38 0.32 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.34 2.87 9.08 -39.29 -0.36 2.51 16 42 H 0.35 3.39 8.55 -39.29 -0.34 3.05 16 43 H 0.09 1.12 6.45 -51.93 -0.33 0.79 16 44 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -32.03 353.78 -10.02 -42.05 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -6.08 Total: 16.83 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -4.05 Total: 3.82 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -0.02 Total: -64.49 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.17 Total: -17.08 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.03 -10.02 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.379 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds