Wall clock time and date at job start Tue Mar 31 2020 12:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86809 * 119.99910 * 2 1 4 4 H 1.48493 * 109.46979 * 265.00336 * 3 2 1 5 5 H 1.48497 * 109.47012 * 25.00368 * 3 2 1 6 6 H 1.48500 * 109.46981 * 145.00210 * 3 2 1 7 7 C 1.40025 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99864 * 185.30315 * 7 2 1 9 9 C 1.41325 * 119.99993 * 5.29986 * 7 2 1 10 10 C 1.40612 * 119.78900 * 185.57955 * 9 7 2 11 11 C 1.38315 * 119.13057 * 180.29698 * 10 9 7 12 12 C 1.38684 * 118.66729 * 359.44029 * 11 10 9 13 13 C 1.39639 * 119.49739 * 0.27868 * 12 11 10 14 14 N 1.39253 * 119.57086 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00160 * 339.03143 * 14 13 12 16 16 O 1.21569 * 120.00061 * 3.89184 * 15 14 13 17 17 N 1.34777 * 119.99827 * 183.89871 * 15 14 13 18 18 C 1.47516 * 118.75625 * 185.14086 * 17 15 14 19 19 C 1.53572 * 111.02736 * 138.35042 * 18 17 15 20 20 C 1.51537 * 109.58280 * 320.02436 * 19 18 17 21 21 O 1.42148 * 108.75893 * 91.40026 * 20 19 18 22 22 C 1.38018 * 119.44021 * 272.76858 * 21 20 19 23 23 H 1.08999 * 109.47209 * 303.43198 * 22 21 20 24 24 C 1.52992 * 109.47161 * 183.43390 * 22 21 20 25 25 N 1.46898 * 109.47369 * 64.99897 * 24 22 21 26 26 C 1.45118 * 118.76026 * 4.86911 * 17 15 14 27 27 N 1.31923 * 120.85179 * 0.02562 * 13 12 11 28 28 H 0.97001 * 119.99895 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.43352 * 0.02562 * 10 9 7 30 30 H 1.08002 * 120.66208 * 179.71752 * 11 10 9 31 31 H 1.08001 * 120.24713 * 180.29648 * 12 11 10 32 32 H 0.97002 * 119.99451 * 159.03079 * 14 13 12 33 33 H 1.08997 * 109.16791 * 258.74612 * 18 17 15 34 34 H 1.08994 * 109.16812 * 17.95086 * 18 17 15 35 35 H 1.08995 * 109.45628 * 80.05587 * 19 18 17 36 36 H 1.09000 * 109.45223 * 199.99217 * 19 18 17 37 37 H 1.09002 * 109.59170 * 211.18343 * 20 19 18 38 38 H 1.09000 * 109.58848 * 331.46766 * 20 19 18 39 39 H 1.09003 * 109.47159 * 185.00450 * 24 22 21 40 40 H 1.09003 * 109.47463 * 305.00191 * 24 22 21 41 41 H 1.00904 * 110.99904 * 179.97438 * 25 24 22 42 42 H 1.00895 * 111.00216 * 303.96096 * 25 24 22 43 43 H 1.09005 * 109.45864 * 29.32845 * 26 17 15 44 44 H 1.08999 * 109.46415 * 149.28604 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.5945 1.9855 -1.3947 5 1 1.3900 2.6809 0.5918 6 1 3.4822 1.4730 0.8030 7 6 2.0075 -1.2127 -0.0005 8 1 3.0840 -1.2147 0.0859 9 6 1.3054 -2.4339 -0.1141 10 6 1.9984 -3.6517 0.0037 11 6 1.2988 -4.8388 -0.1159 12 6 -0.0692 -4.7855 -0.3371 13 6 -0.7014 -3.5445 -0.4388 14 7 -2.0749 -3.4892 -0.6614 15 6 -2.7154 -4.5511 -1.1890 16 8 -2.1079 -5.5817 -1.4048 17 7 -4.0295 -4.4704 -1.4775 18 6 -4.7290 -5.6817 -1.9459 19 6 -6.1144 -5.8045 -1.2948 20 6 -6.0293 -5.3952 0.1617 21 8 -6.3090 -4.0052 0.2631 22 6 -5.2825 -3.0942 0.1169 23 1 -4.4983 -3.3109 0.8422 24 6 -5.8179 -1.6805 0.3518 25 7 -6.2582 -1.5492 1.7471 26 6 -4.7042 -3.1965 -1.3099 27 7 -0.0140 -2.4240 -0.3277 28 1 -0.4850 0.8401 0.0004 29 1 3.0638 -3.6599 0.1808 30 1 1.8070 -5.7883 -0.0342 31 1 -0.6413 -5.6968 -0.4297 32 1 -2.5706 -2.6862 -0.4366 33 1 -4.8455 -5.6317 -3.0284 34 1 -4.1348 -6.5592 -1.6910 35 1 -6.8184 -5.1542 -1.8140 36 1 -6.4570 -6.8371 -1.3623 37 1 -6.7595 -5.9583 0.7429 38 1 -5.0272 -5.5971 0.5401 39 1 -5.0298 -0.9552 0.1497 40 1 -6.6610 -1.4959 -0.3140 41 1 -6.6160 -0.6232 1.9278 42 1 -6.9429 -2.2533 1.9781 43 1 -3.9932 -2.3855 -1.4679 44 1 -5.5136 -3.1160 -2.0354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:42 Heat of formation + Delta-G solvation = -32.740966 kcal Electronic energy + Delta-G solvation = -27931.885036 eV Core-core repulsion = 24077.267828 eV Total energy + Delta-G solvation = -3854.617208 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.18703 -40.51842 -39.49410 -36.68498 -36.26038 -35.75610 -35.05716 -33.38234 -32.31851 -31.03859 -29.95473 -27.73566 -27.32693 -25.59778 -23.89736 -23.49469 -22.53510 -22.15617 -20.83006 -19.66067 -19.32012 -18.23455 -17.85088 -17.62646 -17.09853 -16.79744 -16.43400 -16.34681 -16.14036 -15.82499 -15.56385 -15.17117 -14.91211 -14.67295 -14.54696 -14.20145 -13.87585 -13.77583 -13.47307 -13.30355 -13.04732 -12.87544 -12.78500 -12.66854 -12.58003 -12.29857 -12.03573 -11.84228 -11.64809 -11.60675 -11.05943 -10.75022 -10.66557 -10.00101 -9.80124 -9.61609 -9.57529 -8.96636 -8.31669 -6.49413 0.80402 1.11538 1.41750 1.43336 1.55206 1.57091 2.00571 2.25243 2.58627 2.70386 2.88172 3.44652 3.78009 3.84563 3.90942 3.96510 4.03430 4.13453 4.26857 4.27792 4.32498 4.46254 4.54216 4.61383 4.70283 4.73533 4.83272 4.85608 4.91204 4.93952 4.99444 5.05795 5.12804 5.24433 5.44935 5.56538 5.67296 5.74708 5.98079 6.16088 6.23098 6.28009 6.53012 6.63411 6.68683 6.80709 6.97612 7.38555 8.09394 8.45919 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.004185 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.018524 B = 6688.608891 C = 8265.375574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.029 3.971 3 Si 0.988 3.012 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.468 4.468 8 H 0.092 0.908 9 C 0.247 3.753 10 C -0.308 4.308 11 C -0.048 4.048 12 C -0.330 4.330 13 C 0.360 3.640 14 N -0.655 5.655 15 C 0.700 3.300 16 O -0.599 6.599 17 N -0.614 5.614 18 C 0.121 3.879 19 C -0.150 4.150 20 C 0.071 3.929 21 O -0.385 6.385 22 C 0.095 3.905 23 H 0.028 0.972 24 C 0.077 3.923 25 N -0.859 5.859 26 C 0.072 3.928 27 N -0.534 5.534 28 H 0.280 0.720 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.408 0.592 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.353 0.647 42 H 0.350 0.650 43 H 0.078 0.922 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.407 -2.847 -1.579 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.499 4.499 8 H 0.110 0.890 9 C 0.121 3.879 10 C -0.331 4.331 11 C -0.073 4.073 12 C -0.355 4.355 13 C 0.124 3.876 14 N -0.303 5.303 15 C 0.401 3.599 16 O -0.478 6.478 17 N -0.351 5.351 18 C 0.000 4.000 19 C -0.188 4.188 20 C -0.005 4.005 21 O -0.304 6.304 22 C 0.034 3.966 23 H 0.046 0.954 24 C -0.055 4.055 25 N -0.391 5.391 26 C -0.053 4.053 27 N -0.254 5.254 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.157 0.843 32 H 0.246 0.754 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.097 0.903 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.085 -2.764 -1.627 17.383 hybrid contribution 0.279 0.246 -0.275 0.463 sum -16.806 -2.518 -1.902 17.100 Atomic orbital electron populations 1.70155 1.08839 1.29188 1.29422 1.26929 0.95752 1.04329 0.92296 0.85146 0.78975 0.75650 0.79441 1.18983 1.19078 1.18013 1.19922 0.95153 0.90252 1.44607 0.89033 1.18677 0.87077 0.93475 0.88686 1.21903 1.00161 0.93421 1.17572 1.21184 0.93656 0.97664 0.94782 1.22022 0.96146 0.97968 1.19317 1.18569 0.84000 0.90912 0.94083 1.42379 1.06394 1.17617 1.63933 1.16043 0.82708 0.82931 0.78211 1.90734 1.65724 1.30778 1.60567 1.47166 1.06030 1.12326 1.69544 1.21931 0.93456 0.85452 0.99169 1.22441 0.95368 1.04986 0.96019 1.22320 1.00791 0.80516 0.96829 1.86165 1.36128 1.15920 1.92146 1.21917 0.89961 0.90466 0.94222 0.95446 1.21696 1.00500 0.93032 0.90258 1.58568 1.48691 1.09858 1.21996 1.22495 0.98874 0.84764 0.99121 1.67982 1.08749 1.25826 1.22796 0.90928 0.86812 0.85194 0.84343 0.75366 0.90329 0.90632 0.89034 0.86726 0.86794 0.95457 0.89670 0.92550 0.83287 0.83700 0.90334 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.73 11.51 21.84 0.25 -39.48 16 2 C 0.03 1.47 5.48 85.29 0.47 1.94 16 3 Si 0.99 37.79 29.56 68.60 2.03 39.82 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 7 C -0.47 -25.67 9.13 23.46 0.21 -25.46 16 8 H 0.09 4.69 7.85 -2.91 -0.02 4.66 16 9 C 0.25 14.21 6.53 40.20 0.26 14.48 16 10 C -0.31 -16.08 9.83 22.87 0.22 -15.86 16 11 C -0.05 -2.38 10.15 22.39 0.23 -2.15 16 12 C -0.33 -17.05 8.90 22.71 0.20 -16.85 16 13 C 0.36 19.00 7.51 133.24 1.00 20.00 16 14 N -0.65 -28.53 5.19 -322.15 -1.67 -30.20 16 15 C 0.70 27.63 8.11 179.06 1.45 29.08 16 16 O -0.60 -27.24 12.34 -3.93 -0.05 -27.29 16 17 N -0.61 -17.44 2.21 -837.03 -1.85 -19.28 16 18 C 0.12 2.68 6.13 86.38 0.53 3.21 16 19 C -0.15 -2.23 5.78 30.31 0.18 -2.05 16 20 C 0.07 1.34 6.37 71.50 0.46 1.80 16 21 O -0.38 -8.05 8.97 -117.90 -1.06 -9.11 16 22 C 0.10 2.22 2.76 31.03 0.09 2.30 16 23 H 0.03 0.85 8.13 -2.39 -0.02 0.83 16 24 C 0.08 1.52 6.48 86.30 0.56 2.07 16 25 N -0.86 -17.02 9.62 -186.73 -1.80 -18.82 16 26 C 0.07 1.66 4.48 87.08 0.39 2.05 16 27 N -0.53 -30.55 7.95 -186.38 -1.48 -32.03 16 28 H 0.28 13.19 8.29 -92.71 -0.77 12.42 16 29 H 0.11 5.41 8.06 -2.91 -0.02 5.38 16 30 H 0.13 5.37 8.06 -2.91 -0.02 5.35 16 31 H 0.14 7.13 5.16 -10.07 -0.05 7.08 16 32 H 0.41 16.47 6.52 -92.71 -0.60 15.86 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.97 7.06 -2.39 -0.02 1.95 16 35 H 0.09 1.19 8.01 -2.39 -0.02 1.17 16 36 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.03 0.68 7.41 -2.39 -0.02 0.66 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.35 5.51 9.08 -89.69 -0.81 4.70 16 42 H 0.35 6.42 8.55 -89.70 -0.77 5.65 16 43 H 0.08 2.00 6.45 -2.38 -0.02 1.99 16 44 H 0.12 2.07 8.11 -2.39 -0.02 2.05 16 Total: -1.00 -71.56 353.78 -0.54 -72.10 By element: Atomic # 1 Polarization: 50.89 SS G_CDS: -1.16 Total: 49.73 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 6.25 Total: 14.57 kcal Atomic # 7 Polarization: -133.27 SS G_CDS: -6.54 Total: -139.81 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.11 Total: -36.40 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -71.56 -0.54 -72.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.360 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds