Wall clock time and date at job start Tue Mar 31 2020 12:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86797 * 119.99937 * 2 1 4 4 H 1.48503 * 109.47093 * 240.00392 * 3 2 1 5 5 H 1.48495 * 109.47371 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47396 * 120.00429 * 3 2 1 7 7 C 1.40027 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99636 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.40610 * 119.78737 * 180.02562 * 9 7 2 11 11 C 1.38306 * 119.12825 * 179.97438 * 10 9 7 12 12 C 1.38689 * 118.67555 * 359.97438 * 11 10 9 13 13 C 1.39645 * 119.49241 * 0.02562 * 12 11 10 14 14 N 1.39247 * 119.57640 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00110 * 18.14435 * 14 13 12 16 16 O 1.21578 * 119.99394 * 5.68343 * 15 14 13 17 17 N 1.34776 * 120.00152 * 185.68830 * 15 14 13 18 18 C 1.47502 * 118.75648 * 174.79733 * 17 15 14 19 19 C 1.53572 * 110.98741 * 221.58206 * 18 17 15 20 20 C 1.51532 * 109.57746 * 40.00168 * 19 18 17 21 21 O 1.42164 * 108.75557 * 268.59886 * 20 19 18 22 22 C 1.38020 * 119.43673 * 87.23074 * 21 20 19 23 23 H 1.08999 * 109.46723 * 56.57865 * 22 21 20 24 24 C 1.52998 * 109.46601 * 176.57433 * 22 21 20 25 25 N 1.46904 * 109.47077 * 299.99898 * 24 22 21 26 26 C 1.45015 * 118.68486 * 354.73657 * 17 15 14 27 27 N 1.31937 * 120.85286 * 0.25399 * 13 12 11 28 28 H 0.97002 * 119.99887 * 359.97438 * 1 2 3 29 29 H 1.07991 * 120.43398 * 359.97438 * 10 9 7 30 30 H 1.08001 * 120.66825 * 180.02562 * 11 10 9 31 31 H 1.07993 * 120.25790 * 179.97438 * 12 11 10 32 32 H 0.97000 * 120.00019 * 198.14493 * 14 13 12 33 33 H 1.08995 * 109.17169 * 101.20522 * 18 17 15 34 34 H 1.09004 * 109.16794 * 341.94795 * 18 17 15 35 35 H 1.08999 * 109.45532 * 160.03918 * 19 18 17 36 36 H 1.09009 * 109.44886 * 279.98884 * 19 18 17 37 37 H 1.09000 * 109.59623 * 28.37853 * 20 19 18 38 38 H 1.08993 * 109.59116 * 148.67772 * 20 19 18 39 39 H 1.09000 * 109.47462 * 59.99521 * 24 22 21 40 40 H 1.08995 * 109.47096 * 180.02562 * 24 22 21 41 41 H 1.00906 * 110.99979 * 180.02562 * 25 24 22 42 42 H 1.00895 * 111.00054 * 303.95487 * 25 24 22 43 43 H 1.09006 * 109.48792 * 330.73500 * 26 17 15 44 44 H 1.08995 * 109.43501 * 210.76403 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6964 1.2124 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3009 -2.4367 -0.0005 10 6 2.0085 -3.6518 -0.0005 11 6 1.3032 -4.8415 0.0000 12 6 -0.0828 -4.7935 0.0011 13 6 -0.7278 -3.5549 0.0010 14 7 -2.1194 -3.5047 0.0016 15 6 -2.8328 -4.5888 0.3656 16 8 -2.2643 -5.5754 0.7917 17 7 -4.1761 -4.5791 0.2571 18 6 -4.9208 -5.8176 0.5524 19 6 -6.0490 -6.0372 -0.4662 20 6 -5.5632 -5.6599 -1.8511 21 8 -5.8685 -4.2914 -2.0856 22 6 -4.9747 -3.3188 -1.6856 23 1 -4.0037 -3.5073 -2.1436 24 6 -5.4868 -1.9449 -2.1228 25 7 -5.6210 -1.9150 -3.5854 26 6 -4.8332 -3.3502 -0.1444 27 7 -0.0358 -2.4317 -0.0050 28 1 -0.4850 0.8401 0.0004 29 1 3.0884 -3.6560 -0.0010 30 1 1.8214 -5.7891 0.0004 31 1 -0.6590 -5.7069 0.0011 32 1 -2.5754 -2.6895 -0.2601 33 1 -5.3498 -5.7476 1.5519 34 1 -4.2357 -6.6646 0.5156 35 1 -6.3458 -7.0859 -0.4588 36 1 -6.9043 -5.4160 -0.2001 37 1 -4.4853 -5.8098 -1.9138 38 1 -6.0623 -6.2806 -2.5952 39 1 -6.4579 -1.7565 -1.6650 40 1 -4.7808 -1.1768 -1.8074 41 1 -5.9576 -1.0171 -3.8994 42 1 -4.7482 -2.1505 -4.0335 43 1 -4.2396 -2.4967 0.1832 44 1 -5.8217 -3.3017 0.3121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:46 Heat of formation + Delta-G solvation = -9.039505 kcal Electronic energy + Delta-G solvation = -27954.346547 eV Core-core repulsion = 24100.757111 eV Total energy + Delta-G solvation = -3853.589435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.83688 -39.12136 -37.80792 -35.48830 -35.02044 -34.31468 -33.33932 -32.34832 -30.40176 -29.35142 -28.71230 -26.64769 -25.51257 -24.47196 -22.50022 -21.61364 -21.51211 -20.88052 -19.35886 -18.26843 -17.55368 -16.94686 -16.66737 -16.48102 -15.78849 -15.40919 -14.99526 -14.82882 -14.48034 -14.39991 -14.24590 -13.89650 -13.72003 -13.26626 -13.12693 -12.95021 -12.76095 -12.36660 -12.17458 -12.03310 -11.86859 -11.50762 -11.25814 -11.09963 -11.03467 -10.92389 -10.66787 -10.56035 -10.14693 -9.89766 -9.64568 -9.32610 -9.08795 -8.78527 -8.54011 -8.04281 -7.69820 -7.08506 -6.43950 -4.52581 2.60932 2.77798 2.94307 3.04999 3.08245 3.23349 3.54064 3.60679 3.92364 4.07563 4.37387 4.68428 4.76541 4.78522 4.83881 4.96546 5.09390 5.12071 5.20003 5.37108 5.45980 5.47228 5.62187 5.76383 5.81189 5.88818 5.92084 5.97563 6.13598 6.39954 6.46494 6.71178 6.79816 6.92823 6.95295 7.01787 7.15923 7.30531 7.48886 7.57235 7.60405 7.88992 8.00603 8.13773 8.35574 8.67717 8.84306 8.99599 10.03089 10.28712 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.004160 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.451840 B = 6728.904107 C = 8192.185995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.725 5.725 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.436 4.436 8 H 0.085 0.915 9 C 0.281 3.719 10 C -0.290 4.290 11 C -0.049 4.049 12 C -0.313 4.313 13 C 0.371 3.629 14 N -0.658 5.658 15 C 0.703 3.297 16 O -0.565 6.565 17 N -0.627 5.627 18 C 0.129 3.871 19 C -0.165 4.165 20 C 0.074 3.926 21 O -0.367 6.367 22 C 0.089 3.911 23 H 0.052 0.948 24 C 0.070 3.930 25 N -0.841 5.841 26 C 0.073 3.927 27 N -0.509 5.509 28 H 0.270 0.730 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.401 0.599 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.341 0.659 42 H 0.341 0.659 43 H 0.085 0.915 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.539 -3.372 -3.232 14.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.347 5.347 2 C -0.152 4.152 3 Si 0.731 3.269 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.154 3.846 10 C -0.313 4.313 11 C -0.074 4.074 12 C -0.338 4.338 13 C 0.136 3.864 14 N -0.306 5.306 15 C 0.405 3.595 16 O -0.442 6.442 17 N -0.365 5.365 18 C 0.006 3.994 19 C -0.203 4.203 20 C -0.003 4.003 21 O -0.285 6.285 22 C 0.028 3.972 23 H 0.070 0.930 24 C -0.061 4.061 25 N -0.371 5.371 26 C -0.052 4.052 27 N -0.228 5.228 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.151 0.849 32 H 0.238 0.762 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.103 0.897 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.487 -3.704 -2.892 15.230 hybrid contribution 1.566 1.149 0.230 1.956 sum -12.920 -2.555 -2.662 13.437 Atomic orbital electron populations 1.70116 1.07219 1.27458 1.29933 1.26021 0.94873 1.00942 0.93341 0.86403 0.80099 0.80459 0.79913 1.18956 1.20353 1.18964 1.19524 0.94202 0.89216 1.43850 0.89737 1.18158 0.86333 0.92090 0.87997 1.21701 0.98751 0.93484 1.17371 1.20807 0.93665 0.96617 0.96264 1.21653 0.94584 0.97689 1.19865 1.18242 0.81984 0.91143 0.94997 1.42480 1.05570 1.14303 1.68228 1.15836 0.81169 0.83627 0.78903 1.90819 1.68352 1.33977 1.51031 1.47043 1.04557 1.11927 1.72980 1.21657 0.93744 0.86390 0.97563 1.22511 0.98854 1.02837 0.96142 1.22158 1.00341 0.82141 0.95633 1.86340 1.46844 1.13948 1.81353 1.22110 0.93174 0.88956 0.92928 0.93024 1.21755 1.01318 0.93565 0.89485 1.58591 1.36150 1.36851 1.05466 1.22421 0.99658 0.87240 0.95919 1.68020 1.08190 1.24468 1.22080 0.91922 0.88261 0.88369 0.84909 0.76174 0.91939 0.88902 0.89616 0.90372 0.92873 0.89283 0.90123 0.93370 0.84663 0.84629 0.89728 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.54 11.46 55.55 0.64 -17.91 16 2 C 0.07 1.81 5.50 -17.34 -0.10 1.71 16 3 Si 0.91 18.26 29.56 -169.99 -5.02 13.24 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.44 -11.57 9.14 -37.73 -0.34 -11.92 16 8 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 9 C 0.28 7.72 6.55 -84.99 -0.56 7.17 16 10 C -0.29 -7.32 9.83 -38.66 -0.38 -7.70 16 11 C -0.05 -1.17 10.15 -39.39 -0.40 -1.57 16 12 C -0.31 -7.76 8.84 -38.89 -0.34 -8.10 16 13 C 0.37 9.28 7.52 -154.98 -1.16 8.12 16 14 N -0.66 -13.52 5.25 -15.79 -0.08 -13.60 16 15 C 0.70 13.40 8.06 -86.91 -0.70 12.70 16 16 O -0.57 -12.49 12.45 5.30 0.07 -12.42 16 17 N -0.63 -8.96 2.19 -178.29 -0.39 -9.35 16 18 C 0.13 1.53 6.12 -3.20 -0.02 1.51 16 19 C -0.16 -1.54 5.79 -27.18 -0.16 -1.70 16 20 C 0.07 0.81 6.37 36.41 0.23 1.04 16 21 O -0.37 -4.54 9.31 -26.55 -0.25 -4.79 16 22 C 0.09 1.07 2.85 -25.78 -0.07 1.00 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 C 0.07 0.73 6.48 -3.82 -0.02 0.71 16 25 N -0.84 -8.64 9.48 -10.37 -0.10 -8.74 16 26 C 0.07 0.87 4.56 -3.89 -0.02 0.85 16 27 N -0.51 -13.83 7.89 -10.26 -0.08 -13.91 16 28 H 0.27 6.24 8.29 -40.82 -0.34 5.90 16 29 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.13 3.27 5.28 -52.56 -0.28 3.00 16 32 H 0.40 7.50 6.48 -40.82 -0.26 7.24 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.24 7.06 -51.93 -0.37 0.87 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.71 8.01 -51.92 -0.42 0.30 16 37 H 0.05 0.69 7.40 -51.93 -0.38 0.30 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.34 2.82 9.08 -39.29 -0.36 2.47 16 42 H 0.34 3.52 8.99 -39.29 -0.35 3.17 16 43 H 0.08 1.04 6.31 -51.93 -0.33 0.71 16 44 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -31.89 354.49 -10.02 -41.91 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -6.10 Total: 16.40 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -4.05 Total: 3.83 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.02 Total: -63.51 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.18 Total: -17.21 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.24 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.89 -10.02 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.871 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds