Wall clock time and date at job start Tue Mar 31 2020 12:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86797 * 119.99937 * 2 1 4 4 H 1.48503 * 109.47093 * 240.00392 * 3 2 1 5 5 H 1.48495 * 109.47371 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47396 * 120.00429 * 3 2 1 7 7 C 1.40027 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99636 * 180.02562 * 7 2 1 9 9 C 1.41334 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.40610 * 119.78737 * 180.02562 * 9 7 2 11 11 C 1.38306 * 119.12825 * 179.97438 * 10 9 7 12 12 C 1.38689 * 118.67555 * 359.97438 * 11 10 9 13 13 C 1.39645 * 119.49241 * 0.02562 * 12 11 10 14 14 N 1.39247 * 119.57640 * 179.97438 * 13 12 11 15 15 C 1.34781 * 120.00110 * 18.14435 * 14 13 12 16 16 O 1.21578 * 119.99394 * 5.68343 * 15 14 13 17 17 N 1.34776 * 120.00152 * 185.68830 * 15 14 13 18 18 C 1.47502 * 118.75648 * 174.79733 * 17 15 14 19 19 C 1.53572 * 110.98741 * 221.58206 * 18 17 15 20 20 C 1.51532 * 109.57746 * 40.00168 * 19 18 17 21 21 O 1.42164 * 108.75557 * 268.59886 * 20 19 18 22 22 C 1.38020 * 119.43673 * 87.23074 * 21 20 19 23 23 H 1.08999 * 109.46723 * 56.57865 * 22 21 20 24 24 C 1.52998 * 109.46601 * 176.57433 * 22 21 20 25 25 N 1.46904 * 109.47077 * 299.99898 * 24 22 21 26 26 C 1.45015 * 118.68486 * 354.73657 * 17 15 14 27 27 N 1.31937 * 120.85286 * 0.25399 * 13 12 11 28 28 H 0.97002 * 119.99887 * 359.97438 * 1 2 3 29 29 H 1.07991 * 120.43398 * 359.97438 * 10 9 7 30 30 H 1.08001 * 120.66825 * 180.02562 * 11 10 9 31 31 H 1.07993 * 120.25790 * 179.97438 * 12 11 10 32 32 H 0.97000 * 120.00019 * 198.14493 * 14 13 12 33 33 H 1.08995 * 109.17169 * 101.20522 * 18 17 15 34 34 H 1.09004 * 109.16794 * 341.94795 * 18 17 15 35 35 H 1.08999 * 109.45532 * 160.03918 * 19 18 17 36 36 H 1.09009 * 109.44886 * 279.98884 * 19 18 17 37 37 H 1.09000 * 109.59623 * 28.37853 * 20 19 18 38 38 H 1.08993 * 109.59116 * 148.67772 * 20 19 18 39 39 H 1.09000 * 109.47462 * 59.99521 * 24 22 21 40 40 H 1.08995 * 109.47096 * 180.02562 * 24 22 21 41 41 H 1.00906 * 110.99979 * 180.02562 * 25 24 22 42 42 H 1.00895 * 111.00054 * 303.95487 * 25 24 22 43 43 H 1.09006 * 109.48792 * 330.73500 * 26 17 15 44 44 H 1.08995 * 109.43501 * 210.76403 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2765 2.7464 0.0006 6 1 3.0953 1.6964 1.2124 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0001 9 6 1.3009 -2.4367 -0.0005 10 6 2.0085 -3.6518 -0.0005 11 6 1.3032 -4.8415 0.0000 12 6 -0.0828 -4.7935 0.0011 13 6 -0.7278 -3.5549 0.0010 14 7 -2.1194 -3.5047 0.0016 15 6 -2.8328 -4.5888 0.3656 16 8 -2.2643 -5.5754 0.7917 17 7 -4.1761 -4.5791 0.2571 18 6 -4.9208 -5.8176 0.5524 19 6 -6.0490 -6.0372 -0.4662 20 6 -5.5632 -5.6599 -1.8511 21 8 -5.8685 -4.2914 -2.0856 22 6 -4.9747 -3.3188 -1.6856 23 1 -4.0037 -3.5073 -2.1436 24 6 -5.4868 -1.9449 -2.1228 25 7 -5.6210 -1.9150 -3.5854 26 6 -4.8332 -3.3502 -0.1444 27 7 -0.0358 -2.4317 -0.0050 28 1 -0.4850 0.8401 0.0004 29 1 3.0884 -3.6560 -0.0010 30 1 1.8214 -5.7891 0.0004 31 1 -0.6590 -5.7069 0.0011 32 1 -2.5754 -2.6895 -0.2601 33 1 -5.3498 -5.7476 1.5519 34 1 -4.2357 -6.6646 0.5156 35 1 -6.3458 -7.0859 -0.4588 36 1 -6.9043 -5.4160 -0.2001 37 1 -4.4853 -5.8098 -1.9138 38 1 -6.0623 -6.2806 -2.5952 39 1 -6.4579 -1.7565 -1.6650 40 1 -4.7808 -1.1768 -1.8074 41 1 -5.9576 -1.0171 -3.8994 42 1 -4.7482 -2.1505 -4.0335 43 1 -4.2396 -2.4967 0.1832 44 1 -5.8217 -3.3017 0.3121 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:45 Heat of formation + Delta-G solvation = -30.820146 kcal Electronic energy + Delta-G solvation = -27955.291026 eV Core-core repulsion = 24100.757111 eV Total energy + Delta-G solvation = -3854.533915 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.18514 -40.47949 -39.47828 -36.66002 -36.26852 -35.76881 -35.07327 -33.38051 -32.32907 -31.03912 -29.89125 -27.72768 -27.33481 -25.59152 -23.88922 -23.52046 -22.56264 -22.14805 -20.81380 -19.68195 -19.31926 -18.20991 -17.87950 -17.58272 -17.21281 -16.72763 -16.44517 -16.26266 -16.11906 -15.68155 -15.54967 -15.18539 -14.80245 -14.67720 -14.52215 -14.20541 -14.00197 -13.84392 -13.67816 -13.21889 -13.01373 -12.87458 -12.79754 -12.66409 -12.57236 -12.31077 -11.96400 -11.87330 -11.64328 -11.53070 -11.09695 -10.82019 -10.61121 -10.01428 -9.77448 -9.62958 -9.58670 -8.95459 -8.31628 -6.51833 0.78611 1.10692 1.40658 1.42432 1.53501 1.55883 2.00156 2.23841 2.62795 2.71083 2.87507 3.43940 3.79001 3.85106 3.90782 3.95974 3.97421 4.19329 4.23155 4.28226 4.30331 4.45659 4.54862 4.60848 4.62804 4.74357 4.83442 4.84431 4.89847 4.96048 4.98525 5.06177 5.14131 5.22603 5.44176 5.55207 5.65920 5.73776 5.95893 6.13811 6.16740 6.25761 6.56317 6.64907 6.67457 6.79271 6.95992 7.37327 8.08176 8.44060 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.004160 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.451840 B = 6728.904107 C = 8192.185995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.262 1.262 7 C -0.466 4.466 8 H 0.092 0.908 9 C 0.247 3.753 10 C -0.309 4.309 11 C -0.047 4.047 12 C -0.329 4.329 13 C 0.363 3.637 14 N -0.655 5.655 15 C 0.700 3.300 16 O -0.599 6.599 17 N -0.614 5.614 18 C 0.122 3.878 19 C -0.150 4.150 20 C 0.069 3.931 21 O -0.373 6.373 22 C 0.097 3.903 23 H 0.023 0.977 24 C 0.073 3.927 25 N -0.848 5.848 26 C 0.072 3.928 27 N -0.532 5.532 28 H 0.279 0.721 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.408 0.592 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.026 0.974 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.352 0.648 42 H 0.339 0.661 43 H 0.080 0.920 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.017 -2.596 -3.232 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.497 4.497 8 H 0.110 0.890 9 C 0.120 3.880 10 C -0.331 4.331 11 C -0.072 4.072 12 C -0.354 4.354 13 C 0.127 3.873 14 N -0.303 5.303 15 C 0.401 3.599 16 O -0.478 6.478 17 N -0.350 5.350 18 C 0.001 3.999 19 C -0.188 4.188 20 C -0.007 4.007 21 O -0.291 6.291 22 C 0.036 3.964 23 H 0.041 0.959 24 C -0.058 4.058 25 N -0.378 5.378 26 C -0.053 4.053 27 N -0.252 5.252 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.246 0.754 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.045 0.955 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.166 0.834 42 H 0.151 0.849 43 H 0.098 0.902 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.036 -2.940 -2.905 16.560 hybrid contribution 1.927 0.830 0.212 2.109 sum -14.109 -2.110 -2.693 14.518 Atomic orbital electron populations 1.70189 1.08762 1.29072 1.29456 1.26930 0.95788 1.04290 0.92367 0.85190 0.78654 0.75442 0.79967 1.18342 1.19117 1.18614 1.19925 0.94850 0.90108 1.44855 0.89020 1.18684 0.87074 0.93454 0.88766 1.21882 0.99565 0.93394 1.18288 1.21156 0.93527 0.97653 0.94827 1.21839 0.95233 0.97730 1.20587 1.18564 0.83667 0.90933 0.94152 1.42387 1.04228 1.15272 1.68451 1.16031 0.82615 0.82617 0.78627 1.90775 1.69586 1.34887 1.52583 1.47137 1.02801 1.13602 1.71488 1.21922 0.93910 0.84563 0.99506 1.22440 0.97714 1.04798 0.93855 1.22308 0.99032 0.81884 0.97474 1.86336 1.46697 1.14463 1.81602 1.22006 0.91999 0.89897 0.92520 0.95945 1.21748 1.01967 0.92414 0.89718 1.58600 1.36067 1.37779 1.05389 1.22603 1.00583 0.85909 0.96188 1.68052 1.08447 1.25332 1.23388 0.91012 0.86820 0.85245 0.84916 0.75370 0.90244 0.90665 0.86867 0.89084 0.95542 0.87350 0.88724 0.93221 0.83371 0.84919 0.90162 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -38.84 11.46 21.84 0.25 -38.59 16 2 C 0.03 1.40 5.50 85.29 0.47 1.87 16 3 Si 0.99 37.04 29.56 68.60 2.03 39.07 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.47 -25.15 9.14 23.47 0.21 -24.93 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 9 C 0.25 13.94 6.55 40.20 0.26 14.21 16 10 C -0.31 -15.88 9.83 22.87 0.22 -15.65 16 11 C -0.05 -2.28 10.15 22.39 0.23 -2.06 16 12 C -0.33 -16.74 8.84 22.72 0.20 -16.54 16 13 C 0.36 18.74 7.52 133.24 1.00 19.74 16 14 N -0.65 -27.76 5.25 -322.12 -1.69 -29.45 16 15 C 0.70 27.21 8.06 179.05 1.44 28.66 16 16 O -0.60 -27.16 12.45 -3.96 -0.05 -27.21 16 17 N -0.61 -17.26 2.19 -836.25 -1.83 -19.08 16 18 C 0.12 2.74 6.12 86.38 0.53 3.27 16 19 C -0.15 -2.40 5.79 30.31 0.18 -2.22 16 20 C 0.07 1.42 6.37 71.50 0.46 1.87 16 21 O -0.37 -8.65 9.31 -117.93 -1.10 -9.75 16 22 C 0.10 2.26 2.85 31.21 0.09 2.35 16 23 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 24 C 0.07 1.43 6.48 86.30 0.56 1.99 16 25 N -0.85 -16.57 9.48 -186.72 -1.77 -18.34 16 26 C 0.07 1.63 4.56 87.27 0.40 2.02 16 27 N -0.53 -29.86 7.89 -186.36 -1.47 -31.33 16 28 H 0.28 12.88 8.29 -92.71 -0.77 12.11 16 29 H 0.11 5.32 8.06 -2.92 -0.02 5.30 16 30 H 0.13 5.28 8.06 -2.91 -0.02 5.26 16 31 H 0.13 6.74 5.28 -4.03 -0.02 6.72 16 32 H 0.41 15.76 6.48 -92.71 -0.60 15.16 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.07 1.99 7.06 -2.39 -0.02 1.97 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.09 1.30 8.01 -2.38 -0.02 1.28 16 37 H 0.03 0.68 7.40 -2.39 -0.02 0.67 16 38 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.35 5.39 9.08 -89.69 -0.81 4.58 16 42 H 0.34 6.92 8.99 -89.70 -0.81 6.11 16 43 H 0.08 1.93 6.31 -2.38 -0.02 1.91 16 44 H 0.12 2.07 8.11 -2.39 -0.02 2.05 16 Total: -1.00 -70.48 354.49 -0.55 -71.03 By element: Atomic # 1 Polarization: 50.25 SS G_CDS: -1.17 Total: 49.08 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 6.25 Total: 14.57 kcal Atomic # 7 Polarization: -130.28 SS G_CDS: -6.51 Total: -136.79 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -1.15 Total: -36.96 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -70.48 -0.55 -71.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.209 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds