Wall clock time and date at job start Tue Mar 31 2020 12:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00189 * 2 1 4 4 H 1.48502 * 109.46904 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47121 * 120.00080 * 3 2 1 6 6 H 1.48504 * 109.47362 * 240.00280 * 3 2 1 7 7 C 1.37876 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00229 * 185.82459 * 7 2 1 9 9 C 1.50704 * 120.00006 * 5.82690 * 7 2 1 10 10 C 1.52998 * 115.55014 * 279.58385 * 9 7 2 11 11 N 1.46501 * 109.47172 * 294.34954 * 10 9 7 12 12 C 1.35308 * 125.87027 * 120.27139 * 11 10 9 13 13 C 1.35350 * 106.17809 * 180.02562 * 12 11 10 14 14 C 1.50696 * 126.75522 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.47347 * 94.99813 * 14 13 12 16 16 C 1.48559 * 110.99813 * 285.41719 * 15 14 13 17 17 C 1.54379 * 104.59315 * 200.95883 * 16 15 14 18 18 C 1.54254 * 105.06163 * 23.85680 * 17 16 15 19 19 C 1.48557 * 110.99957 * 170.00163 * 15 14 13 20 20 H 1.08996 * 110.41600 * 40.25877 * 19 15 14 21 21 C 1.50700 * 110.40973 * 277.81887 * 19 15 14 22 22 O 1.20819 * 120.00426 * 359.97438 * 21 19 15 23 23 O 1.34229 * 120.00005 * 180.02562 * 21 19 15 24 24 N 1.33770 * 106.49560 * 359.97438 * 13 12 11 25 25 N 1.28643 * 108.88406 * 359.73511 * 24 13 12 26 26 C 1.53000 * 117.49787 * 133.87619 * 9 7 2 27 27 C 1.53001 * 60.00042 * 252.50970 * 26 9 7 28 28 H 0.97003 * 120.00252 * 174.97305 * 1 2 3 29 29 H 1.09000 * 109.47003 * 54.34496 * 10 9 7 30 30 H 1.08995 * 109.47203 * 174.34379 * 10 9 7 31 31 H 1.08000 * 126.91499 * 359.97438 * 12 11 10 32 32 H 1.08999 * 109.47167 * 214.99859 * 14 13 12 33 33 H 1.09006 * 109.47129 * 334.99598 * 14 13 12 34 34 H 1.09001 * 110.41378 * 319.74199 * 16 15 14 35 35 H 1.09004 * 110.40775 * 82.17943 * 16 15 14 36 36 H 1.09008 * 110.32446 * 264.95864 * 17 16 15 37 37 H 1.08999 * 110.31904 * 142.75462 * 17 16 15 38 38 H 1.09003 * 110.32301 * 241.10316 * 18 17 16 39 39 H 1.09001 * 110.32697 * 118.89437 * 18 17 16 40 40 H 0.96702 * 117.00576 * 179.97438 * 23 21 19 41 41 H 1.08995 * 117.50343 * 0.02562 * 26 9 7 42 42 H 1.09000 * 117.49798 * 145.02355 * 26 9 7 43 43 H 1.09001 * 117.50316 * 252.51080 * 27 26 9 44 44 H 1.09002 * 117.49619 * 107.48847 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0802 -1.1966 0.0944 9 6 1.2568 -2.4957 -0.1336 10 6 0.6112 -3.0202 1.1505 11 7 1.6568 -3.3685 2.1158 12 6 1.8094 -2.8306 3.3479 13 6 2.8911 -3.4352 3.8921 14 6 3.4734 -3.1822 5.2588 15 7 2.9341 -4.1632 6.2101 16 6 1.5267 -3.8445 6.5630 17 6 1.2873 -4.5725 7.9031 18 6 2.6894 -4.7419 8.5234 19 6 3.6581 -4.1019 7.5058 20 1 3.8650 -3.0667 7.7771 21 6 4.9388 -4.8926 7.4302 22 8 5.2387 -5.4604 6.4068 23 8 5.7458 -4.9671 8.5002 24 7 3.3412 -4.3025 2.9784 25 7 2.5846 -4.2430 1.9397 26 6 1.8048 -3.5274 -1.1217 27 6 0.5239 -2.7580 -1.4509 28 1 -0.4851 -0.8368 -0.0736 29 1 -0.0325 -2.2495 1.5745 30 1 0.0171 -3.9052 0.9233 31 1 1.1927 -2.0709 3.8050 32 1 4.5583 -3.2772 5.2148 33 1 3.2097 -2.1763 5.5855 34 1 1.4000 -2.7689 6.6867 35 1 0.8481 -4.2226 5.7984 36 1 0.8304 -5.5467 7.7284 37 1 0.6556 -3.9686 8.5544 38 1 2.9209 -5.7991 8.6531 39 1 2.7461 -4.2210 9.4792 40 1 6.5560 -5.4862 8.4039 41 1 2.7064 -3.2649 -1.6751 42 1 1.7056 -4.5801 -0.8569 43 1 -0.4179 -3.3045 -1.4026 44 1 0.5827 -1.9891 -2.2212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:29 Heat of formation + Delta-G solvation = 39.654409 kcal Electronic energy + Delta-G solvation = -27265.003449 eV Core-core repulsion = 23413.525540 eV Total energy + Delta-G solvation = -3851.477909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52009 -40.61997 -38.59334 -37.24381 -36.10450 -33.82220 -32.64881 -32.09796 -30.27587 -29.75593 -27.27854 -25.78617 -25.05500 -23.74203 -21.75510 -21.50736 -21.19427 -20.76982 -20.43459 -19.48195 -18.10911 -17.16701 -16.98341 -16.53142 -16.06236 -15.51298 -15.28854 -14.86765 -14.62456 -14.19815 -14.14839 -13.85678 -13.71726 -13.26053 -13.17241 -12.80420 -12.52650 -12.29506 -12.24463 -11.81616 -11.64724 -11.50159 -11.37934 -11.29994 -10.98221 -10.93019 -10.85661 -10.54681 -10.43256 -10.23008 -10.13002 -9.92623 -9.26917 -8.77999 -8.73699 -8.64927 -8.54690 -8.43041 -6.54561 -4.29927 2.14997 2.32236 2.67165 3.10121 3.18335 3.32875 3.35252 3.53250 4.00210 4.24573 4.36135 4.41898 4.61663 4.82016 4.88923 4.96917 5.05952 5.08062 5.18163 5.26564 5.39038 5.40179 5.48349 5.52057 5.58135 5.64570 5.68731 5.77600 5.82312 5.86846 5.99426 6.11806 6.20157 6.38750 6.50190 6.53257 6.60850 6.69432 6.74237 6.83910 6.95842 7.14093 7.38559 7.85183 8.02811 8.25897 8.67467 9.28984 9.43605 10.83653 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.003235 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.014479 B = 8652.841761 C = 8950.175822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.031 3.969 3 Si 1.065 2.935 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.566 4.566 8 H 0.052 0.948 9 C 0.001 3.999 10 C 0.146 3.854 11 N -0.249 5.249 12 C -0.036 4.036 13 C -0.029 4.029 14 C 0.139 3.861 15 N -0.484 5.484 16 C 0.034 3.966 17 C -0.124 4.124 18 C -0.107 4.107 19 C 0.070 3.930 20 H 0.091 0.909 21 C 0.478 3.522 22 O -0.478 6.478 23 O -0.523 6.523 24 N -0.265 5.265 25 N -0.080 5.080 26 C -0.174 4.174 27 C -0.172 4.172 28 H 0.272 0.728 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.176 0.824 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.409 0.591 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.731 -5.573 18.083 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.175 4.175 3 Si 0.892 3.108 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.604 4.604 8 H 0.070 0.930 9 C 0.000 4.000 10 C 0.025 3.975 11 N -0.040 5.040 12 C -0.190 4.190 13 C -0.169 4.169 14 C 0.010 3.990 15 N -0.209 5.209 16 C -0.093 4.093 17 C -0.162 4.162 18 C -0.146 4.146 19 C -0.040 4.040 20 H 0.108 0.892 21 C 0.317 3.683 22 O -0.362 6.362 23 O -0.336 6.336 24 N -0.131 5.131 25 N -0.060 5.060 26 C -0.211 4.211 27 C -0.211 4.211 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.194 0.806 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.268 0.732 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.888 -5.408 16.607 17.567 hybrid contribution 0.127 -0.268 0.647 0.712 sum 2.015 -5.677 17.254 18.275 Atomic orbital electron populations 1.70810 1.06680 1.31250 1.44974 1.25797 0.96464 1.02291 0.92957 0.83589 0.75013 0.75297 0.76859 1.20611 1.21414 1.21251 1.21245 0.94186 0.89365 1.55600 0.93005 1.19212 0.99551 0.96104 0.85170 1.21971 0.85959 0.99468 0.90125 1.47232 1.21153 1.24141 1.11507 1.23173 1.02862 1.04801 0.88171 1.21201 0.97569 1.00383 0.97724 1.20290 0.99877 0.92380 0.86449 1.65009 1.01732 1.48121 1.06073 1.23186 0.89980 0.98784 0.97351 1.22323 0.96355 1.01661 0.95838 1.22211 0.93553 1.01764 0.97025 1.22135 0.90246 0.98687 0.92892 0.89167 1.23097 0.84843 0.79637 0.80720 1.90819 1.72458 1.41880 1.31042 1.84493 1.36311 1.70398 1.42366 1.75022 1.21135 1.19228 0.97695 1.78241 0.97886 1.10725 1.19153 1.22803 0.97160 0.95802 1.05373 1.22854 0.94240 1.02712 1.01257 0.91707 0.88134 0.90977 0.80637 0.89213 0.92626 0.92927 0.89313 0.90570 0.90619 0.90543 0.89834 0.73197 0.89962 0.90604 0.91180 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.61 55.43 0.75 -23.63 16 2 C 0.03 0.80 5.42 -17.82 -0.10 0.71 16 3 Si 1.06 23.98 29.91 -169.99 -5.08 18.90 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.57 -14.99 8.73 -34.44 -0.30 -15.29 16 8 H 0.05 1.48 7.82 -52.49 -0.41 1.07 16 9 C 0.00 0.02 0.95 -155.66 -0.15 -0.13 16 10 C 0.15 2.99 6.12 -4.04 -0.02 2.97 16 11 N -0.25 -5.21 3.32 -61.27 -0.20 -5.42 16 12 C -0.04 -0.67 11.49 -17.05 -0.20 -0.87 16 13 C -0.03 -0.54 6.42 -82.78 -0.53 -1.07 16 14 C 0.14 2.04 5.21 -4.98 -0.03 2.01 16 15 N -0.48 -6.33 4.59 -224.93 -1.03 -7.36 16 16 C 0.03 0.36 6.10 -2.18 -0.01 0.34 16 17 C -0.12 -0.98 7.00 -25.35 -0.18 -1.16 16 18 C -0.11 -0.84 6.54 -25.35 -0.17 -1.01 16 19 C 0.07 0.72 2.78 -67.22 -0.19 0.53 16 20 H 0.09 0.75 8.00 -51.93 -0.42 0.34 16 21 C 0.48 5.62 7.26 36.01 0.26 5.88 16 22 O -0.48 -7.80 16.67 -18.75 -0.31 -8.11 16 23 O -0.52 -4.36 13.42 -39.26 -0.53 -4.89 16 24 N -0.26 -5.90 12.41 33.29 0.41 -5.49 16 25 N -0.08 -1.82 12.97 60.35 0.78 -1.04 16 26 C -0.17 -3.78 9.90 -26.73 -0.26 -4.04 16 27 C -0.17 -3.69 9.00 -26.73 -0.24 -3.93 16 28 H 0.27 7.13 6.07 -40.82 -0.25 6.89 16 29 H 0.10 2.06 7.53 -51.93 -0.39 1.67 16 30 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 31 H 0.18 2.70 8.06 -52.49 -0.42 2.27 16 32 H 0.09 1.41 7.40 -51.93 -0.38 1.02 16 33 H 0.06 0.67 7.77 -51.93 -0.40 0.27 16 34 H 0.05 0.47 7.75 -51.93 -0.40 0.07 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.64 7.85 -51.93 -0.41 0.23 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.41 1.86 9.10 45.56 0.41 2.27 16 41 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 42 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.09 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -33.85 371.69 -7.39 -41.23 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.67 Total: 5.25 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -2.11 Total: -15.05 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.72 Total: -42.93 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.84 Total: -13.00 kcal Atomic # 14 Polarization: 23.98 SS G_CDS: -5.08 Total: 18.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.85 -7.39 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.887 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds