Wall clock time and date at job start Tue Mar 31 2020 12:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00189 * 2 1 4 4 H 1.48502 * 109.46904 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47121 * 120.00080 * 3 2 1 6 6 H 1.48504 * 109.47362 * 240.00280 * 3 2 1 7 7 C 1.37876 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00229 * 185.82459 * 7 2 1 9 9 C 1.50704 * 120.00006 * 5.82690 * 7 2 1 10 10 C 1.52998 * 115.55014 * 279.58385 * 9 7 2 11 11 N 1.46501 * 109.47172 * 294.34954 * 10 9 7 12 12 C 1.35308 * 125.87027 * 120.27139 * 11 10 9 13 13 C 1.35350 * 106.17809 * 180.02562 * 12 11 10 14 14 C 1.50696 * 126.75522 * 180.02562 * 13 12 11 15 15 N 1.46902 * 109.47347 * 94.99813 * 14 13 12 16 16 C 1.48559 * 110.99813 * 285.41719 * 15 14 13 17 17 C 1.54379 * 104.59315 * 200.95883 * 16 15 14 18 18 C 1.54254 * 105.06163 * 23.85680 * 17 16 15 19 19 C 1.48557 * 110.99957 * 170.00163 * 15 14 13 20 20 H 1.08996 * 110.41600 * 40.25877 * 19 15 14 21 21 C 1.50700 * 110.40973 * 277.81887 * 19 15 14 22 22 O 1.20819 * 120.00426 * 359.97438 * 21 19 15 23 23 O 1.34229 * 120.00005 * 180.02562 * 21 19 15 24 24 N 1.33770 * 106.49560 * 359.97438 * 13 12 11 25 25 N 1.28643 * 108.88406 * 359.73511 * 24 13 12 26 26 C 1.53000 * 117.49787 * 133.87619 * 9 7 2 27 27 C 1.53001 * 60.00042 * 252.50970 * 26 9 7 28 28 H 0.97003 * 120.00252 * 174.97305 * 1 2 3 29 29 H 1.09000 * 109.47003 * 54.34496 * 10 9 7 30 30 H 1.08995 * 109.47203 * 174.34379 * 10 9 7 31 31 H 1.08000 * 126.91499 * 359.97438 * 12 11 10 32 32 H 1.08999 * 109.47167 * 214.99859 * 14 13 12 33 33 H 1.09006 * 109.47129 * 334.99598 * 14 13 12 34 34 H 1.09001 * 110.41378 * 319.74199 * 16 15 14 35 35 H 1.09004 * 110.40775 * 82.17943 * 16 15 14 36 36 H 1.09008 * 110.32446 * 264.95864 * 17 16 15 37 37 H 1.08999 * 110.31904 * 142.75462 * 17 16 15 38 38 H 1.09003 * 110.32301 * 241.10316 * 18 17 16 39 39 H 1.09001 * 110.32697 * 118.89437 * 18 17 16 40 40 H 0.96702 * 117.00576 * 179.97438 * 23 21 19 41 41 H 1.08995 * 117.50343 * 0.02562 * 26 9 7 42 42 H 1.09000 * 117.49798 * 145.02355 * 26 9 7 43 43 H 1.09001 * 117.50316 * 252.51080 * 27 26 9 44 44 H 1.09002 * 117.49619 * 107.48847 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0802 -1.1966 0.0944 9 6 1.2568 -2.4957 -0.1336 10 6 0.6112 -3.0202 1.1505 11 7 1.6568 -3.3685 2.1158 12 6 1.8094 -2.8306 3.3479 13 6 2.8911 -3.4352 3.8921 14 6 3.4734 -3.1822 5.2588 15 7 2.9341 -4.1632 6.2101 16 6 1.5267 -3.8445 6.5630 17 6 1.2873 -4.5725 7.9031 18 6 2.6894 -4.7419 8.5234 19 6 3.6581 -4.1019 7.5058 20 1 3.8650 -3.0667 7.7771 21 6 4.9388 -4.8926 7.4302 22 8 5.2387 -5.4604 6.4068 23 8 5.7458 -4.9671 8.5002 24 7 3.3412 -4.3025 2.9784 25 7 2.5846 -4.2430 1.9397 26 6 1.8048 -3.5274 -1.1217 27 6 0.5239 -2.7580 -1.4509 28 1 -0.4851 -0.8368 -0.0736 29 1 -0.0325 -2.2495 1.5745 30 1 0.0171 -3.9052 0.9233 31 1 1.1927 -2.0709 3.8050 32 1 4.5583 -3.2772 5.2148 33 1 3.2097 -2.1763 5.5855 34 1 1.4000 -2.7689 6.6867 35 1 0.8481 -4.2226 5.7984 36 1 0.8304 -5.5467 7.7284 37 1 0.6556 -3.9686 8.5544 38 1 2.9209 -5.7991 8.6531 39 1 2.7461 -4.2210 9.4792 40 1 6.5560 -5.4862 8.4039 41 1 2.7064 -3.2649 -1.6751 42 1 1.7056 -4.5801 -0.8569 43 1 -0.4179 -3.3045 -1.4026 44 1 0.5827 -1.9891 -2.2212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606591.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:29 Heat of formation + Delta-G solvation = 16.084727 kcal Electronic energy + Delta-G solvation = -27266.025507 eV Core-core repulsion = 23413.525540 eV Total energy + Delta-G solvation = -3852.499967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.07191 -41.49435 -39.45430 -38.98885 -36.98152 -35.20198 -34.08615 -33.91395 -31.39496 -30.64050 -28.87687 -27.09728 -26.87861 -24.61059 -23.35182 -23.00984 -22.50881 -21.86198 -21.42576 -21.10792 -18.98308 -18.77581 -17.97463 -17.90407 -17.34360 -16.89250 -16.20328 -16.07373 -15.79161 -15.71224 -15.61594 -15.23373 -14.89962 -14.86743 -14.45526 -14.01919 -13.76324 -13.42483 -13.34417 -13.07590 -13.00773 -12.72754 -12.50241 -12.45381 -12.35682 -12.28403 -12.14693 -11.99490 -11.71856 -11.66291 -11.61580 -11.26776 -10.96639 -10.58947 -10.53662 -10.38305 -10.09473 -9.52700 -8.61041 -6.36838 0.81490 1.26948 1.51535 1.53902 1.55191 1.63401 1.76599 2.01284 2.50119 3.05857 3.12541 3.21595 3.42389 3.52052 3.76254 3.82216 3.91509 3.96223 4.09265 4.12683 4.22757 4.23514 4.35881 4.37273 4.40223 4.47285 4.57977 4.63051 4.74584 4.80232 4.92165 4.95549 5.01926 5.08258 5.12058 5.18129 5.26267 5.29100 5.38510 5.65890 5.77726 5.81215 5.88663 6.06822 6.13384 6.65342 7.07879 7.40228 7.70940 8.79492 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.003235 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.014479 B = 8652.841761 C = 8950.175822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.000 4.000 3 Si 1.100 2.900 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.580 4.580 8 H 0.020 0.980 9 C -0.020 4.020 10 C 0.153 3.847 11 N -0.256 5.256 12 C -0.036 4.036 13 C -0.025 4.025 14 C 0.144 3.856 15 N -0.513 5.513 16 C 0.032 3.968 17 C -0.117 4.117 18 C -0.100 4.100 19 C 0.067 3.933 20 H 0.117 0.883 21 C 0.483 3.517 22 O -0.535 6.535 23 O -0.510 6.510 24 N -0.301 5.301 25 N -0.114 5.114 26 C -0.170 4.170 27 C -0.158 4.158 28 H 0.270 0.730 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.207 0.793 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.426 0.574 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 -4.658 20.516 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.202 4.202 3 Si 0.924 3.076 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.617 4.617 8 H 0.038 0.962 9 C -0.021 4.021 10 C 0.033 3.967 11 N -0.047 5.047 12 C -0.189 4.189 13 C -0.166 4.166 14 C 0.015 3.985 15 N -0.239 5.239 16 C -0.095 4.095 17 C -0.155 4.155 18 C -0.138 4.138 19 C -0.042 4.042 20 H 0.135 0.865 21 C 0.324 3.676 22 O -0.423 6.423 23 O -0.323 6.323 24 N -0.166 5.166 25 N -0.093 5.093 26 C -0.207 4.207 27 C -0.197 4.197 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.224 0.776 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.287 0.713 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.915 -4.520 19.068 19.618 hybrid contribution 0.504 -0.590 -0.047 0.778 sum 1.419 -5.110 19.022 19.747 Atomic orbital electron populations 1.70880 1.06946 1.31288 1.46013 1.26716 0.96651 1.04564 0.92317 0.83113 0.74405 0.72838 0.77276 1.20082 1.20480 1.20920 1.21299 0.92856 0.91435 1.56118 0.96206 1.19262 1.00586 0.95411 0.86861 1.21852 0.85750 1.00328 0.88803 1.47310 1.20959 1.24148 1.12269 1.23732 1.03021 1.04860 0.87336 1.21868 0.97160 0.98857 0.98706 1.20303 0.98668 0.94391 0.85156 1.64863 1.03374 1.48153 1.07480 1.23243 0.88040 1.00214 0.98009 1.22318 0.96781 1.01491 0.94900 1.22251 0.92555 1.01493 0.97533 1.22338 0.89781 1.00043 0.92057 0.86530 1.23521 0.85290 0.78525 0.80229 1.90807 1.73870 1.44474 1.33194 1.84454 1.36871 1.70269 1.40725 1.74975 1.22014 1.20933 0.98667 1.78188 0.98997 1.12197 1.19964 1.22741 0.96867 0.96301 1.04800 1.22815 0.95264 1.02063 0.99516 0.91889 0.88059 0.88731 0.77578 0.90970 0.89628 0.90964 0.91392 0.91373 0.87825 0.91416 0.86742 0.71274 0.91488 0.89273 0.88233 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.75 13.61 21.45 0.29 -48.46 16 2 C 0.00 -0.01 5.42 84.65 0.46 0.45 16 3 Si 1.10 47.94 29.91 68.60 2.05 49.99 16 4 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.58 -30.98 8.73 25.60 0.22 -30.75 16 8 H 0.02 1.15 7.82 -2.91 -0.02 1.13 16 9 C -0.02 -0.92 0.95 -52.93 -0.05 -0.97 16 10 C 0.15 6.17 6.12 86.38 0.53 6.70 16 11 N -0.26 -10.62 3.32 -347.75 -1.15 -11.77 16 12 C -0.04 -1.30 11.49 83.49 0.96 -0.34 16 13 C -0.03 -0.94 6.42 41.60 0.27 -0.68 16 14 C 0.14 4.09 5.21 85.56 0.45 4.54 16 15 N -0.51 -12.76 4.59 -865.56 -3.97 -16.73 16 16 C 0.03 0.59 6.10 86.45 0.53 1.12 16 17 C -0.12 -1.50 7.00 31.49 0.22 -1.28 16 18 C -0.10 -1.26 6.54 31.49 0.21 -1.06 16 19 C 0.07 1.22 2.78 44.32 0.12 1.34 16 20 H 0.12 1.52 8.00 -2.39 -0.02 1.50 16 21 C 0.48 10.88 7.26 71.24 0.52 11.40 16 22 O -0.54 -17.82 16.67 21.98 0.37 -17.45 16 23 O -0.51 -7.53 13.42 -51.41 -0.69 -8.22 16 24 N -0.30 -13.70 12.41 -48.60 -0.60 -14.30 16 25 N -0.11 -5.29 12.97 37.02 0.48 -4.81 16 26 C -0.17 -7.38 9.90 30.59 0.30 -7.07 16 27 C -0.16 -6.67 9.00 30.60 0.28 -6.39 16 28 H 0.27 13.97 6.07 -92.71 -0.56 13.41 16 29 H 0.10 4.03 7.53 -2.39 -0.02 4.02 16 30 H 0.09 3.33 8.09 -2.39 -0.02 3.31 16 31 H 0.21 5.88 8.06 -2.91 -0.02 5.86 16 32 H 0.07 2.28 7.40 -2.39 -0.02 2.26 16 33 H 0.09 1.84 7.77 -2.38 -0.02 1.83 16 34 H 0.07 1.05 7.75 -2.39 -0.02 1.03 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.98 7.85 -2.39 -0.02 0.96 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.43 3.24 9.10 -74.06 -0.67 2.56 16 41 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 43 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 44 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -75.23 371.69 2.33 -72.90 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.55 Total: 21.85 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 5.00 Total: -23.00 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -4.95 Total: -96.07 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.32 Total: -25.67 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.05 Total: 49.99 kcal Total: -75.23 2.33 -72.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606591.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.989 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds