Wall clock time and date at job start Tue Mar 31 2020 13:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38828 * 120.38060 * 2 1 4 4 C 1.39498 * 118.41640 * 179.97438 * 3 2 1 5 5 C 1.48387 * 120.50416 * 180.02562 * 4 3 2 6 6 O 1.21392 * 120.00246 * 359.97438 * 5 4 3 7 7 O 1.34643 * 119.99628 * 179.97438 * 5 4 3 8 8 N 1.33096 * 118.98953 * 359.74721 * 4 3 2 9 9 C 1.32257 * 120.64915 * 0.50810 * 8 4 3 10 10 N 1.38438 * 119.12815 * 179.75910 * 9 8 4 11 11 C 1.46890 * 111.00573 * 359.72579 * 10 9 8 12 12 C 1.53241 * 109.34516 * 187.25345 * 11 10 9 13 13 H 1.09000 * 109.62288 * 65.87868 * 12 11 10 14 14 C 1.53000 * 109.63113 * 186.46145 * 12 11 10 15 15 N 1.47075 * 108.51776 * 306.17391 * 12 11 10 16 16 C 1.36938 * 120.87977 * 231.18190 * 15 12 11 17 17 H 1.08007 * 120.00039 * 128.09532 * 16 15 12 18 18 C 1.38810 * 120.00171 * 307.82500 * 16 15 12 19 19 N 1.31624 * 119.99851 * 158.19568 * 18 16 15 20 20 Si 1.86792 * 119.99893 * 338.20045 * 18 16 15 21 21 H 1.48500 * 109.47508 * 95.36738 * 20 18 16 22 22 H 1.48502 * 109.47436 * 215.36888 * 20 18 16 23 23 H 1.48499 * 109.47458 * 335.36981 * 20 18 16 24 24 C 1.47080 * 118.23971 * 51.45507 * 15 12 11 25 25 H 1.08998 * 109.62885 * 188.83093 * 24 15 12 26 26 C 1.52993 * 109.62955 * 68.25378 * 24 15 12 27 27 C 1.46895 * 110.99896 * 124.03521 * 10 9 8 28 28 N 1.32103 * 120.37350 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46963 * 270.02448 * 1 2 3 30 30 H 1.09000 * 109.46587 * 30.01851 * 1 2 3 31 31 H 1.09000 * 109.47535 * 150.01828 * 1 2 3 32 32 H 1.07991 * 120.79214 * 0.02562 * 3 2 1 33 33 H 0.96701 * 116.99592 * 179.97438 * 7 5 4 34 34 H 1.09007 * 109.49122 * 67.29413 * 11 10 9 35 35 H 1.09004 * 109.49668 * 307.21844 * 11 10 9 36 36 H 1.08996 * 109.47144 * 187.04349 * 14 12 11 37 37 H 1.08994 * 109.46962 * 307.04799 * 14 12 11 38 38 H 1.09003 * 109.46797 * 67.04891 * 14 12 11 39 39 H 0.97001 * 119.99182 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.47341 * 59.99864 * 26 24 15 41 41 H 1.09004 * 109.47538 * 180.02562 * 26 24 15 42 42 H 1.09004 * 109.46962 * 299.99755 * 26 24 15 43 43 H 1.09005 * 109.48680 * 292.70299 * 27 10 9 44 44 H 1.08996 * 109.49938 * 52.77478 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1976 0.0000 4 6 3.6032 1.1498 0.0005 5 6 4.3998 2.4018 0.0011 6 8 3.8388 3.4782 0.0007 7 8 5.7450 2.3437 0.0022 8 7 4.2080 -0.0358 0.0062 9 6 3.5008 -1.1534 0.0011 10 7 4.1624 -2.3695 0.0021 11 6 5.6186 -2.1767 0.0026 12 6 6.3102 -3.5321 -0.1789 13 1 6.0858 -3.9278 -1.1694 14 6 7.8224 -3.3631 -0.0189 15 7 5.8048 -4.4555 0.8482 16 6 6.6669 -5.1640 1.6419 17 1 6.5564 -5.1391 2.7160 18 6 7.6796 -5.9187 1.0658 19 7 8.7423 -6.2421 1.7717 20 14 7.5339 -6.4752 -0.7114 21 1 8.2451 -5.5132 -1.5913 22 1 8.1401 -7.8227 -0.8595 23 1 6.1009 -6.5320 -1.0966 24 6 4.3488 -4.6025 0.9962 25 1 4.1288 -5.1902 1.8875 26 6 3.7745 -5.2997 -0.2386 27 6 3.7345 -3.2005 1.1353 28 7 2.1749 -1.1397 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3632 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6884 2.1437 0.0004 33 1 6.2207 3.1856 0.0022 34 1 5.9268 -1.7351 0.9504 35 1 5.8980 -1.5133 -0.8160 36 1 8.3212 -4.2989 -0.2707 37 1 8.1722 -2.5742 -0.6846 38 1 8.0509 -3.0958 1.0129 39 1 9.4501 -6.7691 1.3689 40 1 4.2289 -6.2849 -0.3438 41 1 2.6956 -5.4069 -0.1265 42 1 3.9898 -4.7037 -1.1254 43 1 4.0689 -2.7447 2.0673 44 1 2.6475 -3.2798 1.1383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600127188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:23 Heat of formation + Delta-G solvation = 15.615149 kcal Electronic energy + Delta-G solvation = -28131.274135 eV Core-core repulsion = 24278.753805 eV Total energy + Delta-G solvation = -3852.520329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59731 -40.19427 -38.73327 -36.45380 -35.46844 -34.56565 -32.84382 -32.14252 -31.20219 -28.92751 -28.24198 -26.42858 -25.84856 -25.43283 -23.40458 -21.88339 -21.68777 -20.96519 -18.85894 -18.60424 -17.72087 -17.36583 -16.73249 -16.19836 -16.07449 -15.61737 -15.28692 -15.02205 -14.57031 -14.16452 -14.05397 -13.78728 -13.52703 -13.31125 -12.97997 -12.87808 -12.65232 -12.39347 -12.25078 -11.88434 -11.58202 -11.44087 -11.34310 -11.17963 -11.14669 -11.00011 -10.75002 -10.57485 -10.48320 -10.20196 -10.03964 -9.89121 -9.57538 -9.51263 -9.38625 -8.43267 -8.25415 -6.57010 -6.05393 -3.61320 0.19880 0.79981 2.16471 2.44290 3.15961 3.33738 3.47589 3.56466 3.57654 3.80071 4.43945 4.48500 4.51143 4.70716 4.89296 4.92429 5.15372 5.21312 5.24712 5.41789 5.44685 5.58406 5.62217 5.75220 5.85003 5.93643 6.02999 6.04123 6.14352 6.20810 6.32472 6.37211 6.47558 6.52730 6.59908 6.70782 6.81205 6.87911 7.02495 7.13790 7.29227 7.39038 7.54478 8.02024 8.07189 8.47541 8.97718 9.65213 10.20001 11.07799 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.004145 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.231672 B = 6754.025933 C = 7854.334858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.204 3.796 3 C -0.211 4.211 4 C 0.169 3.831 5 C 0.547 3.453 6 O -0.502 6.502 7 O -0.485 6.485 8 N -0.510 5.510 9 C 0.506 3.494 10 N -0.447 5.447 11 C 0.061 3.939 12 C 0.167 3.833 13 H 0.033 0.967 14 C -0.143 4.143 15 N -0.596 5.596 16 C -0.277 4.277 17 H 0.071 0.929 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.866 3.134 21 H -0.280 1.280 22 H -0.303 1.303 23 H -0.258 1.258 24 C 0.167 3.833 25 H 0.082 0.918 26 C -0.157 4.157 27 C 0.059 3.941 28 N -0.510 5.510 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.415 0.585 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.264 0.736 40 H 0.054 0.946 41 H 0.041 0.959 42 H 0.052 0.948 43 H 0.045 0.955 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.037 14.672 -4.023 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.053 3.947 3 C -0.236 4.236 4 C 0.022 3.978 5 C 0.388 3.612 6 O -0.388 6.388 7 O -0.294 6.294 8 N -0.234 5.234 9 C 0.151 3.849 10 N -0.165 5.165 11 C -0.067 4.067 12 C 0.060 3.940 13 H 0.051 0.949 14 C -0.200 4.200 15 N -0.320 5.320 16 C -0.405 4.405 17 H 0.088 0.912 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.694 3.306 21 H -0.208 1.208 22 H -0.230 1.230 23 H -0.182 1.182 24 C 0.060 3.940 25 H 0.100 0.900 26 C -0.216 4.216 27 C -0.067 4.067 28 N -0.230 5.230 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.175 0.825 33 H 0.274 0.726 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.753 13.289 -4.381 18.932 hybrid contribution 0.226 1.359 -0.614 1.508 sum -12.527 14.648 -4.995 19.911 Atomic orbital electron populations 1.20806 0.86943 1.04410 1.04035 1.21664 0.97676 0.86810 0.88577 1.22466 0.93606 1.01406 1.06109 1.20144 0.90495 0.90372 0.96833 1.20448 0.81160 0.87571 0.72039 1.90899 1.72555 1.29681 1.45705 1.84719 1.19008 1.41347 1.84342 1.68493 1.40622 0.97633 1.16635 1.21336 0.85999 0.88988 0.88627 1.58414 1.08805 1.07640 1.41630 1.22771 0.81964 0.99720 1.02217 1.20792 0.93295 0.87295 0.92571 0.94902 1.22021 0.94395 1.01338 1.02284 1.44501 0.99964 1.46579 1.40948 1.18482 1.08888 1.23346 0.89819 0.91200 1.25840 0.96064 0.95277 0.97152 1.69898 1.06876 1.38652 1.37634 0.87296 0.79265 0.77219 0.86807 1.20750 1.23041 1.18202 1.20922 0.85089 0.90671 0.97295 0.90036 1.22218 0.98607 1.00907 0.99894 1.22922 1.00569 0.95081 0.88169 1.67847 1.08317 1.30381 1.16493 0.89281 0.89802 0.89441 0.82493 0.72622 0.92504 0.90302 0.91202 0.94478 0.91020 0.92630 0.92694 0.94018 0.92881 0.93665 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.21 36.00 0.37 -0.37 16 2 C 0.20 2.33 6.83 -82.26 -0.56 1.77 16 3 C -0.21 -2.39 9.39 -38.89 -0.37 -2.75 16 4 C 0.17 2.31 6.79 -82.67 -0.56 1.75 16 5 C 0.55 6.74 8.34 34.91 0.29 7.03 16 6 O -0.50 -6.57 17.20 -19.18 -0.33 -6.90 16 7 O -0.48 -5.12 13.28 -40.34 -0.54 -5.65 16 8 N -0.51 -8.19 8.47 -10.50 -0.09 -8.28 16 9 C 0.51 8.39 7.17 -322.93 -2.32 6.07 16 10 N -0.45 -7.99 4.17 -174.85 -0.73 -8.72 16 11 C 0.06 1.15 4.08 -3.70 -0.02 1.14 16 12 C 0.17 3.54 2.04 -67.49 -0.14 3.40 16 13 H 0.03 0.73 6.85 -51.93 -0.36 0.38 16 14 C -0.14 -3.11 7.80 37.16 0.29 -2.82 16 15 N -0.60 -13.53 1.97 -156.74 -0.31 -13.84 16 16 C -0.28 -7.33 8.73 -15.06 -0.13 -7.46 16 17 H 0.07 2.03 8.06 -52.48 -0.42 1.61 16 18 C 0.06 1.62 3.95 -17.43 -0.07 1.55 16 19 N -0.89 -25.90 13.97 55.49 0.78 -25.12 16 20 Si 0.87 21.41 24.57 -169.99 -4.18 17.23 16 21 H -0.28 -6.78 6.37 56.52 0.36 -6.42 16 22 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 23 H -0.26 -6.25 5.61 56.52 0.32 -5.94 16 24 C 0.17 3.27 3.33 -67.26 -0.22 3.04 16 25 H 0.08 1.59 7.95 -51.93 -0.41 1.18 16 26 C -0.16 -2.92 9.06 37.15 0.34 -2.59 16 27 C 0.06 1.04 4.91 -3.47 -0.02 1.02 16 28 N -0.51 -7.52 9.54 -10.16 -0.10 -7.61 16 29 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.16 1.39 7.73 -52.49 -0.41 0.99 16 33 H 0.42 2.07 9.11 45.56 0.42 2.49 16 34 H 0.06 1.13 8.13 -51.92 -0.42 0.71 16 35 H 0.08 1.43 7.63 -51.93 -0.40 1.04 16 36 H 0.07 1.68 3.15 -51.93 -0.16 1.52 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.66 7.68 -51.93 -0.40 1.26 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.05 1.11 6.83 -51.93 -0.35 0.76 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 1.03 7.06 -51.93 -0.37 0.66 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.36 7.51 -51.93 -0.39 0.97 16 LS Contribution 349.72 15.07 5.27 5.27 Total: -1.00 -31.96 349.72 -8.80 -40.76 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.47 Total: 2.07 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -3.11 Total: 10.79 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.45 Total: -63.57 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -0.87 Total: -12.55 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.18 Total: 17.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.96 -8.80 -40.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600127188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.377 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds