Wall clock time and date at job start Tue Mar 31 2020 13:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38828 * 120.38060 * 2 1 4 4 C 1.39498 * 118.41640 * 179.97438 * 3 2 1 5 5 C 1.48387 * 120.50416 * 180.02562 * 4 3 2 6 6 O 1.21392 * 120.00246 * 359.97438 * 5 4 3 7 7 O 1.34643 * 119.99628 * 179.97438 * 5 4 3 8 8 N 1.33096 * 118.98953 * 359.74721 * 4 3 2 9 9 C 1.32257 * 120.64915 * 0.50810 * 8 4 3 10 10 N 1.38438 * 119.12815 * 179.75910 * 9 8 4 11 11 C 1.46890 * 111.00573 * 359.72579 * 10 9 8 12 12 C 1.53241 * 109.34516 * 187.25345 * 11 10 9 13 13 H 1.09000 * 109.62288 * 65.87868 * 12 11 10 14 14 C 1.53000 * 109.63113 * 186.46145 * 12 11 10 15 15 N 1.47075 * 108.51776 * 306.17391 * 12 11 10 16 16 C 1.36938 * 120.87977 * 231.18190 * 15 12 11 17 17 H 1.08007 * 120.00039 * 128.09532 * 16 15 12 18 18 C 1.38810 * 120.00171 * 307.82500 * 16 15 12 19 19 N 1.31624 * 119.99851 * 158.19568 * 18 16 15 20 20 Si 1.86792 * 119.99893 * 338.20045 * 18 16 15 21 21 H 1.48500 * 109.47508 * 95.36738 * 20 18 16 22 22 H 1.48502 * 109.47436 * 215.36888 * 20 18 16 23 23 H 1.48499 * 109.47458 * 335.36981 * 20 18 16 24 24 C 1.47080 * 118.23971 * 51.45507 * 15 12 11 25 25 H 1.08998 * 109.62885 * 188.83093 * 24 15 12 26 26 C 1.52993 * 109.62955 * 68.25378 * 24 15 12 27 27 C 1.46895 * 110.99896 * 124.03521 * 10 9 8 28 28 N 1.32103 * 120.37350 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46963 * 270.02448 * 1 2 3 30 30 H 1.09000 * 109.46587 * 30.01851 * 1 2 3 31 31 H 1.09000 * 109.47535 * 150.01828 * 1 2 3 32 32 H 1.07991 * 120.79214 * 0.02562 * 3 2 1 33 33 H 0.96701 * 116.99592 * 179.97438 * 7 5 4 34 34 H 1.09007 * 109.49122 * 67.29413 * 11 10 9 35 35 H 1.09004 * 109.49668 * 307.21844 * 11 10 9 36 36 H 1.08996 * 109.47144 * 187.04349 * 14 12 11 37 37 H 1.08994 * 109.46962 * 307.04799 * 14 12 11 38 38 H 1.09003 * 109.46797 * 67.04891 * 14 12 11 39 39 H 0.97001 * 119.99182 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.47341 * 59.99864 * 26 24 15 41 41 H 1.09004 * 109.47538 * 180.02562 * 26 24 15 42 42 H 1.09004 * 109.46962 * 299.99755 * 26 24 15 43 43 H 1.09005 * 109.48680 * 292.70299 * 27 10 9 44 44 H 1.08996 * 109.49938 * 52.77478 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1976 0.0000 4 6 3.6032 1.1498 0.0005 5 6 4.3998 2.4018 0.0011 6 8 3.8388 3.4782 0.0007 7 8 5.7450 2.3437 0.0022 8 7 4.2080 -0.0358 0.0062 9 6 3.5008 -1.1534 0.0011 10 7 4.1624 -2.3695 0.0021 11 6 5.6186 -2.1767 0.0026 12 6 6.3102 -3.5321 -0.1789 13 1 6.0858 -3.9278 -1.1694 14 6 7.8224 -3.3631 -0.0189 15 7 5.8048 -4.4555 0.8482 16 6 6.6669 -5.1640 1.6419 17 1 6.5564 -5.1391 2.7160 18 6 7.6796 -5.9187 1.0658 19 7 8.7423 -6.2421 1.7717 20 14 7.5339 -6.4752 -0.7114 21 1 8.2451 -5.5132 -1.5913 22 1 8.1401 -7.8227 -0.8595 23 1 6.1009 -6.5320 -1.0966 24 6 4.3488 -4.6025 0.9962 25 1 4.1288 -5.1902 1.8875 26 6 3.7745 -5.2997 -0.2386 27 6 3.7345 -3.2005 1.1353 28 7 2.1749 -1.1397 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3632 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6884 2.1437 0.0004 33 1 6.2207 3.1856 0.0022 34 1 5.9268 -1.7351 0.9504 35 1 5.8980 -1.5133 -0.8160 36 1 8.3212 -4.2989 -0.2707 37 1 8.1722 -2.5742 -0.6846 38 1 8.0509 -3.0958 1.0129 39 1 9.4501 -6.7691 1.3689 40 1 4.2289 -6.2849 -0.3438 41 1 2.6956 -5.4069 -0.1265 42 1 3.9898 -4.7037 -1.1254 43 1 4.0689 -2.7447 2.0673 44 1 2.6475 -3.2798 1.1383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600127188.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:23 Heat of formation + Delta-G solvation = -5.600239 kcal Electronic energy + Delta-G solvation = -28132.194103 eV Core-core repulsion = 24278.753805 eV Total energy + Delta-G solvation = -3853.440298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.65846 -41.18117 -40.16091 -37.36671 -36.92202 -35.63539 -34.45372 -33.81863 -32.60280 -30.08758 -29.68615 -27.83637 -27.16236 -26.65440 -25.10775 -23.21019 -22.89437 -22.26161 -20.36236 -19.86147 -18.87673 -18.63868 -18.11211 -17.45236 -17.19225 -16.84985 -16.54872 -16.46516 -16.09272 -15.65744 -15.42458 -14.99821 -14.80219 -14.57161 -14.34931 -14.27529 -13.91717 -13.80836 -13.27687 -13.14448 -13.13830 -12.79594 -12.73866 -12.57016 -12.38372 -12.30319 -12.25225 -12.12412 -11.89168 -11.83836 -11.73260 -11.36897 -11.33627 -11.12642 -10.49789 -10.46527 -9.54235 -8.46429 -8.18015 -5.72152 -0.79213 -0.19969 1.20570 1.35165 1.44738 1.57442 1.58299 1.99239 2.45278 2.54394 2.83647 3.04285 3.29237 3.38315 3.60953 3.80512 3.94160 4.08004 4.12986 4.18422 4.31560 4.36589 4.45360 4.53914 4.68940 4.69965 4.77604 4.78740 4.81268 4.85034 4.91272 4.93342 5.10513 5.21064 5.24915 5.26952 5.31107 5.41175 5.56540 5.57704 5.68158 5.98829 6.09223 6.32175 6.75299 6.94618 7.07129 7.60350 8.19555 8.98637 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017670 B = 0.004145 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.231672 B = 6754.025933 C = 7854.334858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.204 3.796 3 C -0.191 4.191 4 C 0.146 3.854 5 C 0.553 3.447 6 O -0.512 6.512 7 O -0.490 6.490 8 N -0.534 5.534 9 C 0.488 3.512 10 N -0.455 5.455 11 C 0.081 3.919 12 C 0.165 3.835 13 H 0.032 0.968 14 C -0.137 4.137 15 N -0.606 5.606 16 C -0.264 4.264 17 H 0.032 0.968 18 C 0.022 3.978 19 N -0.936 5.936 20 Si 0.916 3.084 21 H -0.270 1.270 22 H -0.311 1.311 23 H -0.249 1.249 24 C 0.161 3.839 25 H 0.077 0.923 26 C -0.145 4.145 27 C 0.074 3.926 28 N -0.523 5.523 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.187 0.813 33 H 0.437 0.563 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.046 0.954 43 H 0.030 0.970 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.855 16.683 -5.563 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.053 3.947 3 C -0.215 4.215 4 C 0.001 3.999 5 C 0.394 3.606 6 O -0.400 6.400 7 O -0.303 6.303 8 N -0.257 5.257 9 C 0.132 3.868 10 N -0.174 5.174 11 C -0.047 4.047 12 C 0.060 3.940 13 H 0.049 0.951 14 C -0.195 4.195 15 N -0.331 5.331 16 C -0.393 4.393 17 H 0.049 0.951 18 C -0.177 4.177 19 N -0.577 5.577 20 Si 0.744 3.256 21 H -0.197 1.197 22 H -0.240 1.240 23 H -0.173 1.173 24 C 0.055 3.945 25 H 0.095 0.905 26 C -0.204 4.204 27 C -0.053 4.053 28 N -0.243 5.243 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.106 0.894 32 H 0.204 0.796 33 H 0.300 0.700 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.049 0.951 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.600 15.369 -5.940 22.690 hybrid contribution 0.995 0.920 -0.052 1.357 sum -14.605 16.289 -5.991 22.683 Atomic orbital electron populations 1.20994 0.83444 1.05885 1.05510 1.22469 0.99626 0.85876 0.86693 1.22866 0.92766 1.02684 1.03199 1.20535 0.91849 0.90070 0.97494 1.20251 0.81553 0.86981 0.71772 1.90894 1.72856 1.29755 1.46496 1.84677 1.18447 1.43340 1.83813 1.68381 1.41454 0.98291 1.17618 1.21182 0.86778 0.88543 0.90264 1.58378 1.07890 1.09026 1.42059 1.22385 0.83054 0.97733 1.01551 1.20800 0.93113 0.88319 0.91792 0.95060 1.21929 0.94929 1.01119 1.01497 1.44571 1.01039 1.46725 1.40747 1.18245 1.09349 1.23064 0.88689 0.95076 1.26243 0.95667 0.95535 1.00234 1.69999 1.07914 1.40364 1.39448 0.86469 0.79569 0.76328 0.83237 1.19670 1.23994 1.17264 1.21043 0.83205 0.92392 0.97826 0.90531 1.22065 1.00360 0.99271 0.98664 1.22692 1.01317 0.93467 0.87793 1.67885 1.07415 1.32024 1.16953 0.87527 0.86924 0.89379 0.79616 0.70029 0.94209 0.89480 0.93452 0.91350 0.93359 0.92744 0.94581 0.90862 0.93503 0.95111 0.87587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.21 71.24 0.73 -0.25 16 2 C 0.20 3.97 6.83 42.66 0.29 4.26 16 3 C -0.19 -3.69 9.39 22.72 0.21 -3.48 16 4 C 0.15 3.70 6.79 41.96 0.28 3.98 16 5 C 0.55 12.57 8.34 70.53 0.59 13.16 16 6 O -0.51 -12.21 17.20 20.19 0.35 -11.86 16 7 O -0.49 -9.58 13.28 -55.52 -0.74 -10.31 16 8 N -0.53 -16.46 8.47 -187.14 -1.58 -18.04 16 9 C 0.49 15.46 7.17 261.53 1.88 17.34 16 10 N -0.46 -15.77 4.17 -707.09 -2.95 -18.72 16 11 C 0.08 3.03 4.08 86.39 0.35 3.38 16 12 C 0.17 7.00 2.04 44.96 0.09 7.09 16 13 H 0.03 1.36 6.85 -2.39 -0.02 1.35 16 14 C -0.14 -5.99 7.80 71.98 0.56 -5.43 16 15 N -0.61 -27.86 1.97 -649.82 -1.28 -29.14 16 16 C -0.26 -14.46 8.73 84.03 0.73 -13.72 16 17 H 0.03 1.94 8.06 -2.91 -0.02 1.91 16 18 C 0.02 1.26 3.95 84.86 0.34 1.59 16 19 N -0.94 -56.32 13.97 21.65 0.30 -56.02 16 20 Si 0.92 44.80 24.57 68.60 1.69 46.48 16 21 H -0.27 -12.68 6.37 99.48 0.63 -12.04 16 22 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 23 H -0.25 -11.70 5.61 99.48 0.56 -11.14 16 24 C 0.16 6.24 3.33 45.11 0.15 6.40 16 25 H 0.08 3.00 7.95 -2.39 -0.02 2.99 16 26 C -0.14 -5.15 9.06 71.98 0.65 -4.49 16 27 C 0.07 2.53 4.91 86.54 0.43 2.95 16 28 N -0.52 -14.11 9.54 -186.05 -1.78 -15.88 16 29 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.11 0.48 8.10 -2.39 -0.02 0.46 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.19 2.47 7.73 -2.92 -0.02 2.44 16 33 H 0.44 3.57 9.11 -74.06 -0.67 2.90 16 34 H 0.04 1.60 8.13 -2.38 -0.02 1.58 16 35 H 0.09 3.08 7.63 -2.39 -0.02 3.07 16 36 H 0.05 2.28 3.15 -2.39 -0.01 2.27 16 37 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.05 2.29 7.68 -2.39 -0.02 2.28 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.35 16 40 H 0.04 1.40 6.83 -2.39 -0.02 1.38 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.05 1.72 7.06 -2.39 -0.02 1.71 16 43 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.11 3.16 7.51 -2.39 -0.02 3.14 16 Total: -1.00 -71.12 349.72 1.43 -69.68 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.14 Total: 11.04 kcal Atomic # 6 Polarization: 25.48 SS G_CDS: 7.28 Total: 32.77 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -7.29 Total: -137.81 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.39 Total: -22.18 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.69 Total: 46.48 kcal Total: -71.12 1.43 -69.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600127188.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.085 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds