Wall clock time and date at job start Tue Mar 31 2020 13:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38837 * 120.37426 * 2 1 4 4 C 1.39495 * 118.41948 * 180.02562 * 3 2 1 5 5 C 1.48383 * 120.50887 * 179.97438 * 4 3 2 6 6 O 1.21391 * 119.99879 * 0.02562 * 5 4 3 7 7 O 1.34640 * 119.99833 * 180.02562 * 5 4 3 8 8 N 1.33104 * 118.98306 * 359.97438 * 4 3 2 9 9 C 1.32248 * 120.65420 * 359.97438 * 8 4 3 10 10 N 1.38433 * 119.13207 * 179.97438 * 9 8 4 11 11 C 1.46901 * 110.99931 * 0.02562 * 10 9 8 12 12 C 1.53247 * 109.33779 * 187.25536 * 11 10 9 13 13 H 1.09000 * 109.62946 * 65.88530 * 12 11 10 14 14 C 1.53000 * 109.62605 * 186.46474 * 12 11 10 15 15 N 1.47077 * 108.51844 * 306.16950 * 12 11 10 16 16 C 1.36940 * 120.88044 * 231.16425 * 15 12 11 17 17 H 1.07997 * 120.00313 * 126.65743 * 16 15 12 18 18 C 1.38812 * 119.99745 * 306.65502 * 16 15 12 19 19 N 1.31619 * 120.00232 * 337.99580 * 18 16 15 20 20 Si 1.86805 * 119.99815 * 158.00167 * 18 16 15 21 21 H 1.48499 * 109.47136 * 59.99421 * 20 18 16 22 22 H 1.48493 * 109.46996 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46971 * 299.99506 * 20 18 16 24 24 C 1.47076 * 118.23658 * 51.18934 * 15 12 11 25 25 H 1.08997 * 109.62843 * 68.52616 * 24 15 12 26 26 C 1.53008 * 109.62742 * 189.09923 * 24 15 12 27 27 C 1.46895 * 111.00044 * 124.30517 * 10 9 8 28 28 N 1.32095 * 120.38387 * 180.26570 * 2 1 3 29 29 H 1.09003 * 109.46773 * 90.00774 * 1 2 3 30 30 H 1.09001 * 109.47207 * 210.00030 * 1 2 3 31 31 H 1.08997 * 109.47735 * 330.00694 * 1 2 3 32 32 H 1.08001 * 120.79313 * 0.03444 * 3 2 1 33 33 H 0.96694 * 116.99888 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.49528 * 307.21253 * 11 10 9 35 35 H 1.08998 * 109.49117 * 67.29688 * 11 10 9 36 36 H 1.09003 * 109.47601 * 67.77213 * 14 12 11 37 37 H 1.08999 * 109.47019 * 187.77833 * 14 12 11 38 38 H 1.09004 * 109.47232 * 307.77744 * 14 12 11 39 39 H 0.97001 * 120.00080 * 185.05447 * 19 18 16 40 40 H 1.08997 * 109.47084 * 179.02764 * 26 24 15 41 41 H 1.08998 * 109.47233 * 299.03198 * 26 24 15 42 42 H 1.09002 * 109.47029 * 59.03247 * 26 24 15 43 43 H 1.08992 * 109.49250 * 292.70127 * 27 10 9 44 44 H 1.08994 * 109.49357 * 52.78995 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1978 0.0000 4 6 3.6031 1.1502 -0.0005 5 6 4.3996 2.4022 -0.0011 6 8 3.8384 3.4786 -0.0007 7 8 5.7447 2.3443 -0.0022 8 7 4.2080 -0.0354 -0.0005 9 6 3.5010 -1.1531 0.0005 10 7 4.1626 -2.3691 0.0000 11 6 5.6189 -2.1760 -0.0012 12 6 6.3103 -3.5313 -0.1844 13 1 6.0849 -3.9264 -1.1749 14 6 7.8226 -3.3623 -0.0260 15 7 5.8062 -4.4555 0.8427 16 6 6.6694 -5.1648 1.6346 17 1 6.5749 -5.1223 2.7096 18 6 7.6659 -5.9385 1.0555 19 7 7.5416 -6.3477 -0.1893 20 14 9.1832 -6.3990 2.0430 21 1 8.7768 -7.1757 3.2417 22 1 10.0889 -7.2233 1.2033 23 1 9.8898 -5.1644 2.4694 24 6 4.3505 -4.5981 0.9964 25 1 3.9367 -5.0959 0.1194 26 6 4.0440 -5.4193 2.2505 27 6 3.7366 -3.2007 1.1334 28 7 2.1751 -1.1395 -0.0053 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6881 2.1439 0.0006 33 1 6.2204 3.1861 -0.0029 34 1 5.8972 -1.5122 -0.8197 35 1 5.9280 -1.7351 0.9465 36 1 8.0535 -3.1083 1.0086 37 1 8.3221 -4.2939 -0.2916 38 1 8.1697 -2.5640 -0.6821 39 1 8.2011 -6.9482 -0.5705 40 1 2.9645 -5.5087 2.3714 41 1 4.4820 -6.4124 2.1506 42 1 4.4673 -4.9216 3.1231 43 1 4.0724 -2.7453 2.0650 44 1 2.6496 -3.2801 1.1380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600127190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:26 Heat of formation + Delta-G solvation = 9.797478 kcal Electronic energy + Delta-G solvation = -27920.380499 eV Core-core repulsion = 24067.607897 eV Total energy + Delta-G solvation = -3852.772602 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.51140 -40.13217 -38.46081 -36.41020 -35.35373 -34.47817 -32.83524 -32.14738 -30.86696 -28.86746 -27.63492 -26.28616 -25.63655 -25.49316 -23.64125 -21.74531 -21.34095 -20.31629 -19.22431 -18.75153 -17.63540 -17.17095 -16.38337 -16.10502 -15.86487 -15.54883 -15.19795 -14.93077 -14.39926 -14.23927 -13.92761 -13.58026 -13.56449 -13.32057 -12.91587 -12.78726 -12.59116 -12.04422 -11.84044 -11.62967 -11.45556 -11.27958 -11.17333 -11.06741 -10.89207 -10.83521 -10.68545 -10.54607 -10.45409 -10.24154 -10.05105 -9.86648 -9.80190 -9.55912 -9.29788 -8.22197 -8.13826 -6.34257 -5.78437 -3.52107 0.26615 0.87891 2.21918 2.49476 3.25896 3.32505 3.39132 3.42032 3.65898 3.87587 4.41233 4.50345 4.58570 4.77694 4.99179 5.20744 5.22387 5.28289 5.30532 5.48863 5.56679 5.69872 5.79270 5.91657 6.03582 6.06822 6.08644 6.20292 6.34919 6.38833 6.40008 6.55316 6.63569 6.71032 6.79065 6.92961 7.00351 7.12770 7.24973 7.40291 7.53034 7.58353 7.64776 7.87977 8.11516 8.61493 9.18008 9.72042 10.51551 11.16937 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.003880 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.165800 B = 7214.305001 C = 8397.227945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.203 3.797 3 C -0.213 4.213 4 C 0.169 3.831 5 C 0.547 3.453 6 O -0.502 6.502 7 O -0.485 6.485 8 N -0.511 5.511 9 C 0.506 3.494 10 N -0.448 5.448 11 C 0.056 3.944 12 C 0.195 3.805 13 H 0.038 0.962 14 C -0.137 4.137 15 N -0.578 5.578 16 C -0.272 4.272 17 H 0.052 0.948 18 C 0.043 3.957 19 N -0.873 5.873 20 Si 0.883 3.117 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.171 3.829 25 H 0.037 0.963 26 C -0.128 4.128 27 C 0.059 3.941 28 N -0.512 5.512 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.414 0.586 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.026 0.974 39 H 0.257 0.743 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 14.075 0.481 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.052 3.948 3 C -0.238 4.238 4 C 0.021 3.979 5 C 0.388 3.612 6 O -0.389 6.389 7 O -0.294 6.294 8 N -0.234 5.234 9 C 0.151 3.849 10 N -0.165 5.165 11 C -0.072 4.072 12 C 0.088 3.912 13 H 0.055 0.945 14 C -0.195 4.195 15 N -0.303 5.303 16 C -0.401 4.401 17 H 0.070 0.930 18 C -0.160 4.160 19 N -0.512 5.512 20 Si 0.711 3.289 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.203 1.203 24 C 0.064 3.936 25 H 0.055 0.945 26 C -0.186 4.186 27 C -0.068 4.068 28 N -0.232 5.232 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.174 0.826 33 H 0.273 0.727 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.738 12.708 -0.083 16.010 hybrid contribution 1.002 1.483 0.792 1.957 sum -8.737 14.191 0.709 16.680 Atomic orbital electron populations 1.20799 0.86992 1.04340 1.04022 1.21662 0.97659 0.86837 0.88620 1.22448 0.93596 1.01353 1.06429 1.20140 0.90486 0.90387 0.96919 1.20461 0.81126 0.87596 0.71983 1.90894 1.72546 1.29714 1.45774 1.84723 1.19049 1.41282 1.84358 1.68497 1.40600 0.97618 1.16730 1.21416 0.85975 0.89089 0.88402 1.58449 1.09112 1.07434 1.41461 1.22970 0.81820 1.00896 1.01542 1.20422 0.92413 0.85402 0.92954 0.94451 1.21876 0.95682 1.01689 1.00230 1.44082 0.98865 1.46587 1.40771 1.18546 1.09193 1.23622 0.88780 0.93045 1.25551 0.99900 0.94974 0.95616 1.70068 1.34883 1.31806 1.14414 0.86727 0.83766 0.78376 0.80026 1.20478 1.21529 1.20346 1.20599 0.86808 0.89689 0.96490 0.94493 1.21663 0.98146 1.01420 0.97332 1.22946 1.00349 0.95562 0.87921 1.67853 1.08388 1.30363 1.16554 0.89312 0.89464 0.89845 0.82555 0.72700 0.90613 0.93218 0.93010 0.89739 0.95502 0.93303 0.94414 0.91191 0.93163 0.94074 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.21 36.00 0.37 -0.43 16 2 C 0.20 2.49 6.83 -82.26 -0.56 1.93 16 3 C -0.21 -2.56 9.39 -38.89 -0.37 -2.92 16 4 C 0.17 2.42 6.79 -82.67 -0.56 1.86 16 5 C 0.55 7.03 8.34 34.91 0.29 7.32 16 6 O -0.50 -6.80 17.20 -19.18 -0.33 -7.13 16 7 O -0.48 -5.34 13.28 -40.33 -0.54 -5.88 16 8 N -0.51 -8.67 8.47 -10.51 -0.09 -8.76 16 9 C 0.51 8.98 7.17 -322.95 -2.31 6.67 16 10 N -0.45 -8.67 4.69 -175.13 -0.82 -9.49 16 11 C 0.06 1.12 4.08 -3.70 -0.02 1.11 16 12 C 0.19 4.45 3.21 -67.49 -0.22 4.23 16 13 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 14 C -0.14 -3.06 7.96 37.16 0.30 -2.76 16 15 N -0.58 -13.88 2.81 -157.00 -0.44 -14.32 16 16 C -0.27 -6.98 6.70 -15.06 -0.10 -7.08 16 17 H 0.05 1.34 7.18 -52.49 -0.38 0.97 16 18 C 0.04 1.12 3.22 -17.43 -0.06 1.06 16 19 N -0.87 -24.08 12.10 55.49 0.67 -23.41 16 20 Si 0.88 20.46 29.61 -169.99 -5.03 15.43 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 C 0.17 3.62 3.66 -67.48 -0.25 3.37 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 C -0.13 -2.43 8.19 37.16 0.30 -2.13 16 27 C 0.06 1.11 4.79 -3.70 -0.02 1.10 16 28 N -0.51 -8.07 9.56 -10.16 -0.10 -8.17 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.16 1.48 7.73 -52.49 -0.41 1.07 16 33 H 0.41 2.22 9.11 45.56 0.42 2.63 16 34 H 0.08 1.48 7.62 -51.93 -0.40 1.09 16 35 H 0.05 1.04 8.13 -51.93 -0.42 0.61 16 36 H 0.05 1.17 7.65 -51.93 -0.40 0.78 16 37 H 0.08 2.10 5.20 -51.93 -0.27 1.83 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.47 7.69 -51.93 -0.40 1.07 16 42 H 0.05 0.96 7.57 -51.93 -0.39 0.56 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.41 7.51 -51.93 -0.39 1.02 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -31.19 358.37 -10.02 -41.21 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.55 Total: 1.81 kcal Atomic # 6 Polarization: 16.51 SS G_CDS: -3.20 Total: 13.32 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: -0.78 Total: -64.16 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.87 Total: -13.01 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.19 -10.02 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600127190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.009 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds