Wall clock time and date at job start Tue Mar 31 2020 13:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38837 * 120.37426 * 2 1 4 4 C 1.39495 * 118.41948 * 180.02562 * 3 2 1 5 5 C 1.48383 * 120.50887 * 179.97438 * 4 3 2 6 6 O 1.21391 * 119.99879 * 0.02562 * 5 4 3 7 7 O 1.34640 * 119.99833 * 180.02562 * 5 4 3 8 8 N 1.33104 * 118.98306 * 359.97438 * 4 3 2 9 9 C 1.32248 * 120.65420 * 359.97438 * 8 4 3 10 10 N 1.38433 * 119.13207 * 179.97438 * 9 8 4 11 11 C 1.46901 * 110.99931 * 0.02562 * 10 9 8 12 12 C 1.53247 * 109.33779 * 187.25536 * 11 10 9 13 13 H 1.09000 * 109.62946 * 65.88530 * 12 11 10 14 14 C 1.53000 * 109.62605 * 186.46474 * 12 11 10 15 15 N 1.47077 * 108.51844 * 306.16950 * 12 11 10 16 16 C 1.36940 * 120.88044 * 231.16425 * 15 12 11 17 17 H 1.07997 * 120.00313 * 126.65743 * 16 15 12 18 18 C 1.38812 * 119.99745 * 306.65502 * 16 15 12 19 19 N 1.31619 * 120.00232 * 337.99580 * 18 16 15 20 20 Si 1.86805 * 119.99815 * 158.00167 * 18 16 15 21 21 H 1.48499 * 109.47136 * 59.99421 * 20 18 16 22 22 H 1.48493 * 109.46996 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46971 * 299.99506 * 20 18 16 24 24 C 1.47076 * 118.23658 * 51.18934 * 15 12 11 25 25 H 1.08997 * 109.62843 * 68.52616 * 24 15 12 26 26 C 1.53008 * 109.62742 * 189.09923 * 24 15 12 27 27 C 1.46895 * 111.00044 * 124.30517 * 10 9 8 28 28 N 1.32095 * 120.38387 * 180.26570 * 2 1 3 29 29 H 1.09003 * 109.46773 * 90.00774 * 1 2 3 30 30 H 1.09001 * 109.47207 * 210.00030 * 1 2 3 31 31 H 1.08997 * 109.47735 * 330.00694 * 1 2 3 32 32 H 1.08001 * 120.79313 * 0.03444 * 3 2 1 33 33 H 0.96694 * 116.99888 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.49528 * 307.21253 * 11 10 9 35 35 H 1.08998 * 109.49117 * 67.29688 * 11 10 9 36 36 H 1.09003 * 109.47601 * 67.77213 * 14 12 11 37 37 H 1.08999 * 109.47019 * 187.77833 * 14 12 11 38 38 H 1.09004 * 109.47232 * 307.77744 * 14 12 11 39 39 H 0.97001 * 120.00080 * 185.05447 * 19 18 16 40 40 H 1.08997 * 109.47084 * 179.02764 * 26 24 15 41 41 H 1.08998 * 109.47233 * 299.03198 * 26 24 15 42 42 H 1.09002 * 109.47029 * 59.03247 * 26 24 15 43 43 H 1.08992 * 109.49250 * 292.70127 * 27 10 9 44 44 H 1.08994 * 109.49357 * 52.78995 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1978 0.0000 4 6 3.6031 1.1502 -0.0005 5 6 4.3996 2.4022 -0.0011 6 8 3.8384 3.4786 -0.0007 7 8 5.7447 2.3443 -0.0022 8 7 4.2080 -0.0354 -0.0005 9 6 3.5010 -1.1531 0.0005 10 7 4.1626 -2.3691 0.0000 11 6 5.6189 -2.1760 -0.0012 12 6 6.3103 -3.5313 -0.1844 13 1 6.0849 -3.9264 -1.1749 14 6 7.8226 -3.3623 -0.0260 15 7 5.8062 -4.4555 0.8427 16 6 6.6694 -5.1648 1.6346 17 1 6.5749 -5.1223 2.7096 18 6 7.6659 -5.9385 1.0555 19 7 7.5416 -6.3477 -0.1893 20 14 9.1832 -6.3990 2.0430 21 1 8.7768 -7.1757 3.2417 22 1 10.0889 -7.2233 1.2033 23 1 9.8898 -5.1644 2.4694 24 6 4.3505 -4.5981 0.9964 25 1 3.9367 -5.0959 0.1194 26 6 4.0440 -5.4193 2.2505 27 6 3.7366 -3.2007 1.1334 28 7 2.1751 -1.1395 -0.0053 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5137 32 1 1.6881 2.1439 0.0006 33 1 6.2204 3.1861 -0.0029 34 1 5.8972 -1.5122 -0.8197 35 1 5.9280 -1.7351 0.9465 36 1 8.0535 -3.1083 1.0086 37 1 8.3221 -4.2939 -0.2916 38 1 8.1697 -2.5640 -0.6821 39 1 8.2011 -6.9482 -0.5705 40 1 2.9645 -5.5087 2.3714 41 1 4.4820 -6.4124 2.1506 42 1 4.4673 -4.9216 3.1231 43 1 4.0724 -2.7453 2.0650 44 1 2.6496 -3.2801 1.1380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600127190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:26 Heat of formation + Delta-G solvation = -10.060026 kcal Electronic energy + Delta-G solvation = -27921.241585 eV Core-core repulsion = 24067.607897 eV Total energy + Delta-G solvation = -3853.633688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64184 -41.15647 -39.97576 -37.35859 -36.87570 -35.61974 -34.51525 -33.70839 -32.38343 -29.82236 -29.39911 -27.62934 -27.31099 -26.68795 -25.27834 -22.92789 -22.58313 -21.91786 -20.99641 -19.83694 -18.69357 -18.39122 -17.97744 -17.31524 -17.16434 -16.76937 -16.52084 -16.40567 -16.19120 -15.65356 -15.52512 -14.84760 -14.71966 -14.59985 -14.30202 -13.81884 -13.69923 -13.37682 -13.24168 -13.17211 -12.85740 -12.75937 -12.66749 -12.50948 -12.35255 -12.27766 -12.24100 -12.14004 -12.06647 -11.84781 -11.68876 -11.59227 -11.33619 -11.12478 -10.45567 -10.18949 -9.52145 -8.32361 -7.74827 -5.55079 -0.78693 -0.19524 1.20765 1.46498 1.50395 1.55265 1.58538 2.01880 2.49510 2.54874 2.84779 3.24118 3.39556 3.52068 3.62071 3.81316 4.02158 4.11551 4.20553 4.26624 4.40482 4.45731 4.54554 4.62760 4.74525 4.77313 4.77950 4.82816 4.84750 4.93039 4.96241 4.97358 5.19660 5.22719 5.30686 5.38375 5.45929 5.60106 5.64862 5.65835 5.74615 5.86852 6.12057 6.60125 6.76086 6.95663 7.23801 7.79222 8.55928 9.16374 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017246 B = 0.003880 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.165800 B = 7214.305001 C = 8397.227945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.203 3.797 3 C -0.192 4.192 4 C 0.146 3.854 5 C 0.554 3.446 6 O -0.511 6.511 7 O -0.490 6.490 8 N -0.534 5.534 9 C 0.489 3.511 10 N -0.465 5.465 11 C 0.081 3.919 12 C 0.195 3.805 13 H 0.005 0.995 14 C -0.127 4.127 15 N -0.593 5.593 16 C -0.272 4.272 17 H 0.048 0.952 18 C 0.006 3.994 19 N -0.907 5.907 20 Si 0.936 3.064 21 H -0.274 1.274 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.165 3.835 25 H 0.014 0.986 26 C -0.116 4.116 27 C 0.077 3.923 28 N -0.527 5.527 29 H 0.106 0.894 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.188 0.812 33 H 0.437 0.563 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.253 0.747 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.035 0.965 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.732 16.296 1.257 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.053 3.947 3 C -0.216 4.216 4 C 0.000 4.000 5 C 0.396 3.604 6 O -0.399 6.399 7 O -0.303 6.303 8 N -0.258 5.258 9 C 0.133 3.867 10 N -0.183 5.183 11 C -0.048 4.048 12 C 0.088 3.912 13 H 0.022 0.978 14 C -0.185 4.185 15 N -0.318 5.318 16 C -0.402 4.402 17 H 0.065 0.935 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.764 3.236 21 H -0.199 1.199 22 H -0.220 1.220 23 H -0.199 1.199 24 C 0.058 3.942 25 H 0.032 0.968 26 C -0.174 4.174 27 C -0.050 4.050 28 N -0.248 5.248 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.206 0.794 33 H 0.300 0.700 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.497 14.991 0.707 18.905 hybrid contribution 1.417 0.931 0.524 1.774 sum -10.080 15.922 1.231 18.885 Atomic orbital electron populations 1.20996 0.83385 1.05931 1.05488 1.22498 0.99676 0.85874 0.86691 1.22866 0.92751 1.02631 1.03349 1.20570 0.91905 0.90086 0.97455 1.20209 0.81548 0.86907 0.71774 1.90890 1.72839 1.29684 1.46493 1.84678 1.18427 1.43334 1.83811 1.68379 1.41406 0.98270 1.17736 1.21203 0.86770 0.88581 0.90186 1.58393 1.08422 1.09164 1.42288 1.22507 0.82771 0.98540 1.00978 1.20321 0.93077 0.86683 0.91122 0.97760 1.21736 0.95320 1.01224 1.00246 1.44319 1.00000 1.46852 1.40607 1.18671 1.09507 1.23167 0.88822 0.93483 1.26059 1.01917 0.95124 0.96281 1.70181 1.35638 1.32938 1.15958 0.85873 0.80879 0.78076 0.78815 1.19908 1.21958 1.19904 1.20713 0.85343 0.91590 0.96507 0.96815 1.21542 1.00296 0.99441 0.96109 1.22667 1.00845 0.93757 0.87759 1.67885 1.07505 1.32218 1.17161 0.87622 0.89404 0.86732 0.79444 0.70014 0.90327 0.94142 0.93620 0.92214 0.93002 0.93754 0.90889 0.93617 0.93255 0.94669 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.21 71.23 0.73 -0.41 16 2 C 0.20 4.36 6.83 42.66 0.29 4.65 16 3 C -0.19 -4.00 9.39 22.72 0.21 -3.79 16 4 C 0.15 3.92 6.79 41.96 0.28 4.20 16 5 C 0.55 13.16 8.34 70.52 0.59 13.75 16 6 O -0.51 -12.56 17.20 20.19 0.35 -12.21 16 7 O -0.49 -10.00 13.28 -55.48 -0.74 -10.73 16 8 N -0.53 -17.71 8.47 -187.15 -1.58 -19.29 16 9 C 0.49 17.00 7.17 261.54 1.87 18.88 16 10 N -0.46 -18.13 4.69 -707.98 -3.32 -21.45 16 11 C 0.08 3.30 4.08 86.39 0.35 3.65 16 12 C 0.19 9.19 3.21 44.96 0.14 9.33 16 13 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 14 C -0.13 -5.81 7.96 71.98 0.57 -5.23 16 15 N -0.59 -29.25 2.81 -650.62 -1.83 -31.08 16 16 C -0.27 -14.23 6.70 84.03 0.56 -13.67 16 17 H 0.05 2.49 7.18 -2.91 -0.02 2.47 16 18 C 0.01 0.34 3.22 84.86 0.27 0.61 16 19 N -0.91 -51.65 12.10 21.65 0.26 -51.39 16 20 Si 0.94 42.64 29.61 68.60 2.03 44.67 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 C 0.16 7.11 3.66 44.97 0.16 7.27 16 25 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 26 C -0.12 -4.41 8.19 71.98 0.59 -3.82 16 27 C 0.08 2.88 4.79 86.39 0.41 3.29 16 28 N -0.53 -15.78 9.56 -186.06 -1.78 -17.56 16 29 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.11 0.62 8.09 -2.39 -0.02 0.60 16 32 H 0.19 2.69 7.73 -2.91 -0.02 2.67 16 33 H 0.44 3.82 9.11 -74.06 -0.67 3.14 16 34 H 0.08 3.12 7.62 -2.39 -0.02 3.11 16 35 H 0.04 1.71 8.13 -2.39 -0.02 1.69 16 36 H 0.04 2.09 7.65 -2.39 -0.02 2.07 16 37 H 0.06 3.04 5.20 -2.39 -0.01 3.03 16 38 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.25 14.03 8.32 -92.71 -0.77 13.26 16 40 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.04 1.93 7.69 -2.39 -0.02 1.92 16 42 H 0.05 1.86 7.57 -2.39 -0.02 1.84 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.10 3.31 7.51 -2.39 -0.02 3.29 16 Total: -1.00 -69.33 358.37 0.80 -68.53 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.35 Total: 11.79 kcal Atomic # 6 Polarization: 31.67 SS G_CDS: 7.05 Total: 38.72 kcal Atomic # 7 Polarization: -132.52 SS G_CDS: -8.25 Total: -140.77 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -0.39 Total: -22.94 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -69.33 0.80 -68.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600127190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.467 kcal (2) G-P(sol) polarization free energy of solvation -69.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds