Wall clock time and date at job start Tue Mar 31 2020 12:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47327 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47192 * 299.99289 * 3 2 1 6 6 H 1.48500 * 109.47442 * 59.99755 * 3 2 1 7 7 C 1.37873 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99662 * 191.22864 * 7 2 1 9 9 C 1.50698 * 120.00602 * 11.22545 * 7 2 1 10 10 C 1.53006 * 115.54715 * 40.35821 * 9 7 2 11 11 N 1.46900 * 109.46752 * 211.81898 * 10 9 7 12 12 C 1.46844 * 110.99953 * 77.69416 * 11 10 9 13 13 C 1.53038 * 109.52537 * 185.83938 * 12 11 10 14 14 C 1.53119 * 109.27560 * 300.81689 * 13 12 11 15 15 C 1.53128 * 109.15908 * 57.65404 * 14 13 12 16 16 H 1.08997 * 109.50082 * 62.28707 * 15 14 13 17 17 N 1.46504 * 109.49980 * 182.36403 * 15 14 13 18 18 C 1.34776 * 126.58876 * 34.71673 * 17 15 14 19 19 C 1.36665 * 106.83588 * 179.84658 * 18 17 15 20 20 C 1.47385 * 125.78153 * 180.15356 * 19 18 17 21 21 O 1.21520 * 120.00075 * 0.28533 * 20 19 18 22 22 O 1.34755 * 120.00031 * 180.28460 * 20 19 18 23 23 N 1.34440 * 108.43964 * 0.41956 * 19 18 17 24 24 N 1.28758 * 109.51026 * 359.73744 * 23 19 18 25 25 C 1.46841 * 110.99868 * 201.90062 * 11 10 9 26 26 C 1.53007 * 117.49913 * 186.02334 * 9 7 2 27 27 C 1.53003 * 60.02808 * 107.48124 * 26 9 7 28 28 H 0.97000 * 120.00387 * 355.00243 * 1 2 3 29 29 H 1.09001 * 109.46632 * 331.81310 * 10 9 7 30 30 H 1.08995 * 109.47185 * 91.82132 * 10 9 7 31 31 H 1.09004 * 109.46558 * 305.85358 * 12 11 10 32 32 H 1.09001 * 109.46655 * 65.83229 * 12 11 10 33 33 H 1.08999 * 109.50456 * 60.75921 * 13 12 11 34 34 H 1.09004 * 109.50612 * 180.84155 * 13 12 11 35 35 H 1.09007 * 109.52434 * 177.55424 * 14 13 12 36 36 H 1.08994 * 109.52664 * 297.68847 * 14 13 12 37 37 H 1.08003 * 126.57695 * 359.95462 * 18 17 15 38 38 H 0.96702 * 116.99887 * 180.02562 * 22 20 19 39 39 H 1.09006 * 109.46498 * 294.17986 * 25 11 10 40 40 H 1.08997 * 109.46652 * 54.14542 * 25 11 10 41 41 H 1.08995 * 117.49640 * 214.98042 * 26 9 7 42 42 H 1.08997 * 117.49566 * 359.97438 * 26 9 7 43 43 H 1.08996 * 117.49983 * 107.50304 * 27 26 9 44 44 H 1.09004 * 117.49885 * 252.51772 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0690 -1.2030 0.1827 9 6 1.2726 -2.4868 -0.2529 10 6 0.2006 -2.4353 -1.3434 11 7 -0.8812 -3.3719 -1.0112 12 6 -1.7624 -2.8130 0.0220 13 6 -2.7866 -3.8681 0.4462 14 6 -3.6069 -4.2955 -0.7740 15 6 -2.6610 -4.8289 -1.8537 16 1 -2.1405 -5.7099 -1.4785 17 7 -3.4328 -5.1876 -3.0462 18 6 -4.5323 -4.5612 -3.5100 19 6 -4.9192 -5.2253 -4.6401 20 6 -6.0780 -4.8857 -5.4851 21 8 -6.7818 -3.9374 -5.1986 22 8 -6.3570 -5.6268 -6.5754 23 7 -4.0671 -6.2444 -4.8471 24 7 -3.1728 -6.2521 -3.9208 25 6 -1.6405 -3.7460 -2.2111 26 6 2.0632 -3.7879 -0.1004 27 6 1.0174 -3.4016 0.9475 28 1 -0.4851 0.8368 0.0732 29 1 -0.2017 -1.4244 -1.4099 30 1 0.6418 -2.7145 -2.3002 31 1 -1.1672 -2.5168 0.8858 32 1 -2.2825 -1.9419 -0.3766 33 1 -2.2680 -4.7340 0.8576 34 1 -3.4500 -3.4480 1.2023 35 1 -4.3084 -5.0784 -0.4853 36 1 -4.1571 -3.4382 -1.1617 37 1 -5.0140 -3.6987 -3.0734 38 1 -7.1269 -5.3652 -7.0988 39 1 -2.1609 -2.8703 -2.5992 40 1 -0.9567 -4.1275 -2.9694 41 1 1.8193 -4.6072 -0.7765 42 1 3.1127 -3.7087 0.1829 43 1 0.0856 -3.9668 0.9608 44 1 1.3790 -3.0680 1.9203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:34 Heat of formation + Delta-G solvation = 44.281582 kcal Electronic energy + Delta-G solvation = -27354.330443 eV Core-core repulsion = 23503.053184 eV Total energy + Delta-G solvation = -3851.277260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.49233 -40.07348 -39.06676 -36.60004 -36.32418 -34.23647 -32.26337 -32.19473 -31.35125 -29.75373 -26.52344 -25.42595 -25.10784 -24.02141 -22.78683 -21.78415 -21.34824 -20.94304 -19.66243 -18.87970 -18.33465 -17.79196 -16.52070 -16.35978 -16.11669 -15.40414 -15.21592 -14.84477 -14.78065 -14.58827 -14.22039 -13.88923 -13.54234 -13.46953 -13.19985 -12.75477 -12.35864 -12.32527 -11.84913 -11.69626 -11.67611 -11.54436 -11.29873 -11.07735 -11.04582 -10.89780 -10.77539 -10.62690 -10.50735 -10.31959 -10.20314 -10.05465 -9.58632 -9.25397 -9.11700 -8.69383 -8.07145 -7.60789 -6.13941 -4.17300 0.85479 1.34425 1.77820 2.73281 2.80781 3.18374 3.28562 3.32969 4.00569 4.17915 4.27581 4.41223 4.50707 4.70123 4.83728 4.85516 4.94723 5.01905 5.21527 5.25026 5.47394 5.53996 5.55756 5.73932 5.81156 5.85183 5.91326 5.95657 6.15168 6.22595 6.26163 6.38830 6.52200 6.59152 6.69473 6.81884 6.96254 7.09249 7.24881 7.38622 7.48927 7.54342 7.71959 7.77106 7.83557 7.96720 8.43749 8.79651 9.41209 10.85406 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.003046 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.159707 B = 9189.222771 C = 9704.836873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.055 3.945 10 C 0.083 3.917 11 N -0.527 5.527 12 C 0.059 3.941 13 C -0.115 4.115 14 C -0.129 4.129 15 C 0.150 3.850 16 H 0.124 0.876 17 N -0.341 5.341 18 C 0.109 3.891 19 C -0.102 4.102 20 C 0.580 3.420 21 O -0.515 6.515 22 O -0.498 6.498 23 N -0.188 5.188 24 N -0.056 5.056 25 C 0.049 3.951 26 C -0.205 4.205 27 C -0.192 4.192 28 H 0.260 0.740 29 H 0.097 0.903 30 H 0.039 0.961 31 H 0.105 0.895 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.205 0.795 38 H 0.415 0.585 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 -7.953 -4.669 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.522 4.522 8 H 0.079 0.921 9 C 0.054 3.946 10 C -0.043 4.043 11 N -0.252 5.252 12 C -0.068 4.068 13 C -0.153 4.153 14 C -0.168 4.168 15 C 0.049 3.951 16 H 0.142 0.858 17 N -0.123 5.123 18 C -0.050 4.050 19 C -0.239 4.239 20 C 0.421 3.579 21 O -0.403 6.403 22 O -0.308 6.308 23 N -0.062 5.062 24 N -0.036 5.036 25 C -0.081 4.081 26 C -0.243 4.243 27 C -0.230 4.230 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.058 0.942 31 H 0.123 0.877 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.222 0.778 38 H 0.274 0.726 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.785 -9.261 -4.521 14.918 hybrid contribution -0.965 2.589 -0.324 2.781 sum -11.750 -6.673 -4.845 14.355 Atomic orbital electron populations 1.69813 1.05826 1.26561 1.49654 1.24945 0.94903 0.98982 0.94505 0.86539 0.80366 0.83520 0.77635 1.19737 1.20905 1.21065 1.20700 0.94369 0.89483 1.47666 0.92131 1.18891 0.94154 0.88399 0.93126 1.21879 0.90014 0.96381 0.96013 1.61971 1.11092 1.45125 1.07052 1.22167 0.93685 0.93688 0.97281 1.21655 0.97588 1.00556 0.95514 1.22057 0.97715 1.01283 0.95760 1.21944 0.92143 1.01355 0.79660 0.85781 1.50915 1.19195 1.20810 1.21404 1.23289 0.89130 0.98510 0.94052 1.20100 1.02108 1.01429 1.00307 1.19096 0.81655 0.78803 0.78301 1.90944 1.49369 1.28506 1.71455 1.84647 1.51396 1.56986 1.37774 1.74783 1.00136 1.15433 1.15894 1.82123 1.18120 1.05399 0.97976 1.22324 0.95166 0.95442 0.95125 1.22792 0.95656 1.01214 1.04618 1.23005 0.98753 1.06939 0.94300 0.92982 0.88490 0.94206 0.87683 0.94563 0.90866 0.90726 0.90966 0.91021 0.77822 0.72649 0.94665 0.90350 0.91383 0.91545 0.89745 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.90 10.93 55.43 0.61 -21.29 16 2 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 3 Si 0.89 19.82 29.56 -169.99 -5.02 14.80 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.48 -12.38 9.01 -34.44 -0.31 -12.69 16 8 H 0.06 1.58 7.84 -52.48 -0.41 1.17 16 9 C 0.06 1.26 2.10 -155.62 -0.33 0.93 16 10 C 0.08 1.75 4.87 -3.82 -0.02 1.73 16 11 N -0.53 -8.99 3.53 -234.67 -0.83 -9.82 16 12 C 0.06 0.97 4.31 -3.84 -0.02 0.96 16 13 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 14 C -0.13 -1.33 4.98 -26.60 -0.13 -1.46 16 15 C 0.15 1.78 3.39 -67.84 -0.23 1.55 16 16 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 17 N -0.34 -4.20 3.55 -54.47 -0.19 -4.39 16 18 C 0.11 1.23 10.40 -16.83 -0.17 1.05 16 19 C -0.10 -1.30 7.02 -83.57 -0.59 -1.89 16 20 C 0.58 6.74 8.33 34.45 0.29 7.03 16 21 O -0.52 -6.76 17.65 -19.28 -0.34 -7.10 16 22 O -0.50 -4.57 13.44 -40.64 -0.55 -5.11 16 23 N -0.19 -2.73 12.39 32.83 0.41 -2.32 16 24 N -0.06 -0.81 13.78 60.35 0.83 0.02 16 25 C 0.05 0.72 5.02 -3.84 -0.02 0.70 16 26 C -0.21 -4.31 9.94 -26.73 -0.27 -4.58 16 27 C -0.19 -4.05 8.21 -26.69 -0.22 -4.27 16 28 H 0.26 6.27 8.32 -40.82 -0.34 5.93 16 29 H 0.10 2.29 5.15 -51.93 -0.27 2.02 16 30 H 0.04 0.83 7.76 -51.93 -0.40 0.43 16 31 H 0.11 2.05 5.98 -51.93 -0.31 1.74 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.69 7.11 -51.93 -0.37 0.32 16 37 H 0.21 1.75 7.28 -52.48 -0.38 1.37 16 38 H 0.42 1.55 9.11 45.56 0.42 1.97 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.20 7.92 -51.93 -0.41 0.79 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 1.65 5.71 -51.93 -0.30 1.35 16 44 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -28.43 360.41 -7.30 -35.73 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.38 Total: 4.91 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.27 Total: -10.85 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.82 Total: -37.80 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.89 Total: -12.22 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.43 -7.30 -35.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.012 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds