Wall clock time and date at job start Tue Mar 31 2020 12:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86791 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47327 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47192 * 299.99289 * 3 2 1 6 6 H 1.48500 * 109.47442 * 59.99755 * 3 2 1 7 7 C 1.37873 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99662 * 191.22864 * 7 2 1 9 9 C 1.50698 * 120.00602 * 11.22545 * 7 2 1 10 10 C 1.53006 * 115.54715 * 40.35821 * 9 7 2 11 11 N 1.46900 * 109.46752 * 211.81898 * 10 9 7 12 12 C 1.46844 * 110.99953 * 77.69416 * 11 10 9 13 13 C 1.53038 * 109.52537 * 185.83938 * 12 11 10 14 14 C 1.53119 * 109.27560 * 300.81689 * 13 12 11 15 15 C 1.53128 * 109.15908 * 57.65404 * 14 13 12 16 16 H 1.08997 * 109.50082 * 62.28707 * 15 14 13 17 17 N 1.46504 * 109.49980 * 182.36403 * 15 14 13 18 18 C 1.34776 * 126.58876 * 34.71673 * 17 15 14 19 19 C 1.36665 * 106.83588 * 179.84658 * 18 17 15 20 20 C 1.47385 * 125.78153 * 180.15356 * 19 18 17 21 21 O 1.21520 * 120.00075 * 0.28533 * 20 19 18 22 22 O 1.34755 * 120.00031 * 180.28460 * 20 19 18 23 23 N 1.34440 * 108.43964 * 0.41956 * 19 18 17 24 24 N 1.28758 * 109.51026 * 359.73744 * 23 19 18 25 25 C 1.46841 * 110.99868 * 201.90062 * 11 10 9 26 26 C 1.53007 * 117.49913 * 186.02334 * 9 7 2 27 27 C 1.53003 * 60.02808 * 107.48124 * 26 9 7 28 28 H 0.97000 * 120.00387 * 355.00243 * 1 2 3 29 29 H 1.09001 * 109.46632 * 331.81310 * 10 9 7 30 30 H 1.08995 * 109.47185 * 91.82132 * 10 9 7 31 31 H 1.09004 * 109.46558 * 305.85358 * 12 11 10 32 32 H 1.09001 * 109.46655 * 65.83229 * 12 11 10 33 33 H 1.08999 * 109.50456 * 60.75921 * 13 12 11 34 34 H 1.09004 * 109.50612 * 180.84155 * 13 12 11 35 35 H 1.09007 * 109.52434 * 177.55424 * 14 13 12 36 36 H 1.08994 * 109.52664 * 297.68847 * 14 13 12 37 37 H 1.08003 * 126.57695 * 359.95462 * 18 17 15 38 38 H 0.96702 * 116.99887 * 180.02562 * 22 20 19 39 39 H 1.09006 * 109.46498 * 294.17986 * 25 11 10 40 40 H 1.08997 * 109.46652 * 54.14542 * 25 11 10 41 41 H 1.08995 * 117.49640 * 214.98042 * 26 9 7 42 42 H 1.08997 * 117.49566 * 359.97438 * 26 9 7 43 43 H 1.08996 * 117.49983 * 107.50304 * 27 26 9 44 44 H 1.09004 * 117.49885 * 252.51772 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0690 -1.2030 0.1827 9 6 1.2726 -2.4868 -0.2529 10 6 0.2006 -2.4353 -1.3434 11 7 -0.8812 -3.3719 -1.0112 12 6 -1.7624 -2.8130 0.0220 13 6 -2.7866 -3.8681 0.4462 14 6 -3.6069 -4.2955 -0.7740 15 6 -2.6610 -4.8289 -1.8537 16 1 -2.1405 -5.7099 -1.4785 17 7 -3.4328 -5.1876 -3.0462 18 6 -4.5323 -4.5612 -3.5100 19 6 -4.9192 -5.2253 -4.6401 20 6 -6.0780 -4.8857 -5.4851 21 8 -6.7818 -3.9374 -5.1986 22 8 -6.3570 -5.6268 -6.5754 23 7 -4.0671 -6.2444 -4.8471 24 7 -3.1728 -6.2521 -3.9208 25 6 -1.6405 -3.7460 -2.2111 26 6 2.0632 -3.7879 -0.1004 27 6 1.0174 -3.4016 0.9475 28 1 -0.4851 0.8368 0.0732 29 1 -0.2017 -1.4244 -1.4099 30 1 0.6418 -2.7145 -2.3002 31 1 -1.1672 -2.5168 0.8858 32 1 -2.2825 -1.9419 -0.3766 33 1 -2.2680 -4.7340 0.8576 34 1 -3.4500 -3.4480 1.2023 35 1 -4.3084 -5.0784 -0.4853 36 1 -4.1571 -3.4382 -1.1617 37 1 -5.0140 -3.6987 -3.0734 38 1 -7.1269 -5.3652 -7.0988 39 1 -2.1609 -2.8703 -2.5992 40 1 -0.9567 -4.1275 -2.9694 41 1 1.8193 -4.6072 -0.7765 42 1 3.1127 -3.7087 0.1829 43 1 0.0856 -3.9668 0.9608 44 1 1.3790 -3.0680 1.9203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:33 Heat of formation + Delta-G solvation = 26.186339 kcal Electronic energy + Delta-G solvation = -27355.115112 eV Core-core repulsion = 23503.053184 eV Total energy + Delta-G solvation = -3852.061928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.46171 -40.94538 -40.33385 -38.09384 -37.14240 -35.45202 -34.14193 -33.36290 -32.30880 -30.85280 -28.13933 -27.11291 -26.08844 -25.08274 -24.00305 -22.98124 -22.56582 -22.24674 -20.89648 -20.39999 -19.29931 -18.68819 -18.09939 -17.34920 -17.25728 -16.69488 -16.40559 -16.31722 -15.97281 -15.81992 -15.48358 -14.96122 -14.83422 -14.61744 -14.47737 -14.15478 -13.58704 -13.33585 -13.32546 -13.05948 -12.88900 -12.75589 -12.61881 -12.59155 -12.49459 -12.17173 -11.96010 -11.91387 -11.80311 -11.73554 -11.60056 -11.37697 -11.02292 -10.90938 -10.54245 -10.43853 -9.82696 -9.10196 -8.03094 -6.13270 -0.04610 0.35211 0.83494 1.39166 1.45200 1.53679 1.89110 1.93967 2.42549 2.96714 3.09325 3.20691 3.29318 3.60287 3.69344 3.76305 3.88613 3.98268 4.05620 4.18803 4.22621 4.46619 4.52029 4.60247 4.64690 4.65710 4.76530 4.81269 4.87901 4.93890 5.00171 5.10618 5.17186 5.25530 5.30945 5.45066 5.45690 5.47977 5.53588 5.61500 5.78035 5.98193 6.21461 6.41594 6.58125 6.71333 6.87212 6.98609 7.45877 8.92441 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.003046 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.159707 B = 9189.222771 C = 9704.836873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.035 3.965 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.044 0.956 9 C 0.030 3.970 10 C 0.095 3.905 11 N -0.524 5.524 12 C 0.066 3.934 13 C -0.105 4.105 14 C -0.122 4.122 15 C 0.160 3.840 16 H 0.126 0.874 17 N -0.338 5.338 18 C 0.121 3.879 19 C -0.114 4.114 20 C 0.586 3.414 21 O -0.532 6.532 22 O -0.497 6.497 23 N -0.205 5.205 24 N -0.081 5.081 25 C 0.053 3.947 26 C -0.195 4.195 27 C -0.178 4.178 28 H 0.260 0.740 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.019 0.981 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.234 0.766 38 H 0.438 0.562 39 H 0.032 0.968 40 H 0.067 0.933 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.769 -8.549 -4.645 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.166 4.166 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.030 3.970 10 C -0.032 4.032 11 N -0.248 5.248 12 C -0.062 4.062 13 C -0.143 4.143 14 C -0.160 4.160 15 C 0.060 3.940 16 H 0.144 0.856 17 N -0.121 5.121 18 C -0.038 4.038 19 C -0.252 4.252 20 C 0.429 3.571 21 O -0.422 6.422 22 O -0.310 6.310 23 N -0.079 5.079 24 N -0.061 5.061 25 C -0.077 4.077 26 C -0.232 4.232 27 C -0.216 4.216 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.250 0.750 38 H 0.300 0.700 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.606 -9.883 -4.518 16.643 hybrid contribution -0.409 2.785 -0.387 2.842 sum -13.015 -7.098 -4.905 15.615 Atomic orbital electron populations 1.69916 1.06277 1.26927 1.49272 1.25462 0.95697 1.01101 0.94364 0.85732 0.79058 0.80582 0.77546 1.20175 1.20679 1.20749 1.20891 0.93931 0.91388 1.48906 0.93800 1.18965 0.95368 0.88103 0.94611 1.21538 0.90807 0.95807 0.95075 1.61883 1.11103 1.43591 1.08253 1.22050 0.93798 0.94824 0.95540 1.21568 0.96830 0.99188 0.96706 1.22041 0.97353 1.02513 0.94109 1.21815 0.92018 1.00346 0.79865 0.85582 1.50858 1.19436 1.20588 1.21231 1.23765 0.88261 0.98445 0.93317 1.20434 1.02393 1.01304 1.01082 1.18926 0.81116 0.78538 0.78535 1.90939 1.49902 1.29267 1.72076 1.84603 1.52711 1.56486 1.37218 1.74757 1.00627 1.16346 1.16208 1.82095 1.18697 1.06649 0.98664 1.22278 0.95435 0.96211 0.93796 1.22782 0.95371 1.00578 1.04497 1.22918 0.99381 1.06187 0.93135 0.92990 0.91218 0.94881 0.91047 0.96269 0.90414 0.88815 0.88319 0.89841 0.75022 0.69975 0.94958 0.91405 0.89970 0.91960 0.88036 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.68 10.93 21.45 0.23 -44.45 16 2 C 0.03 1.76 5.15 84.65 0.44 2.20 16 3 Si 0.94 41.17 29.56 68.60 2.03 43.19 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.51 -26.89 9.01 25.60 0.23 -26.66 16 8 H 0.04 2.37 7.84 -2.91 -0.02 2.35 16 9 C 0.03 1.41 2.10 -52.90 -0.11 1.30 16 10 C 0.10 4.06 4.87 86.31 0.42 4.48 16 11 N -0.52 -17.56 3.53 -896.37 -3.16 -20.72 16 12 C 0.07 2.09 4.31 86.33 0.37 2.46 16 13 C -0.10 -2.22 6.09 30.65 0.19 -2.03 16 14 C -0.12 -2.06 4.98 30.68 0.15 -1.91 16 15 C 0.16 3.44 3.39 45.04 0.15 3.59 16 16 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 17 N -0.34 -7.61 3.55 -326.25 -1.16 -8.77 16 18 C 0.12 2.41 10.40 83.87 0.87 3.28 16 19 C -0.11 -2.70 7.02 40.79 0.29 -2.42 16 20 C 0.59 12.53 8.33 70.23 0.59 13.11 16 21 O -0.53 -12.89 17.65 19.77 0.35 -12.54 16 22 O -0.50 -8.14 13.44 -56.66 -0.76 -8.90 16 23 N -0.21 -5.71 12.39 -50.04 -0.62 -6.33 16 24 N -0.08 -2.24 13.78 37.02 0.51 -1.73 16 25 C 0.05 1.47 5.02 86.33 0.43 1.91 16 26 C -0.20 -8.15 9.94 30.60 0.30 -7.85 16 27 C -0.18 -7.52 8.21 30.62 0.25 -7.27 16 28 H 0.26 12.64 8.32 -92.71 -0.77 11.87 16 29 H 0.07 3.38 5.15 -2.39 -0.01 3.37 16 30 H 0.03 1.41 7.76 -2.39 -0.02 1.39 16 31 H 0.07 2.79 5.98 -2.39 -0.01 2.77 16 32 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.08 1.27 7.11 -2.39 -0.02 1.26 16 37 H 0.23 3.15 7.28 -2.91 -0.02 3.13 16 38 H 0.44 2.29 9.11 -74.06 -0.67 1.61 16 39 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.07 2.05 7.92 -2.39 -0.02 2.03 16 41 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.10 3.88 5.71 -2.39 -0.01 3.87 16 44 H 0.05 2.24 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -62.18 360.41 2.35 -59.83 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.36 Total: 16.24 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 4.57 Total: -15.81 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -4.20 Total: -82.00 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.41 Total: -21.44 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.19 kcal Total: -62.18 2.35 -59.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.011 kcal (2) G-P(sol) polarization free energy of solvation -62.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds