Wall clock time and date at job start Tue Mar 31 2020 12:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00158 * 2 1 4 4 H 1.48497 * 109.47343 * 270.00623 * 3 2 1 5 5 H 1.48503 * 109.47007 * 30.00423 * 3 2 1 6 6 H 1.48501 * 109.47341 * 150.00385 * 3 2 1 7 7 C 1.38812 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99899 * 156.76259 * 7 2 1 9 9 N 1.36941 * 120.00029 * 336.76482 * 7 2 1 10 10 C 1.46494 * 120.00072 * 145.92873 * 9 7 2 11 11 C 1.53000 * 109.46971 * 269.48029 * 10 9 7 12 12 C 1.50703 * 109.47344 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99346 * 359.97438 * 12 11 10 14 14 O 1.34223 * 120.00404 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99733 * 325.92623 * 9 7 2 16 16 C 1.50698 * 109.47236 * 270.00148 * 15 9 7 17 17 C 1.38600 * 120.72126 * 269.72330 * 16 15 9 18 18 N 1.32285 * 119.19798 * 179.71486 * 17 16 15 19 19 C 1.32492 * 120.73525 * 0.57004 * 18 17 16 20 20 N 1.38409 * 119.21256 * 179.72508 * 19 18 17 21 21 C 1.48528 * 111.00189 * 242.57963 * 20 19 18 22 22 C 1.54937 * 103.22856 * 159.72103 * 21 20 19 23 23 C 1.54593 * 102.91977 * 322.58760 * 22 21 20 24 24 C 1.47904 * 111.00076 * 359.97438 * 20 19 18 25 25 N 1.32487 * 121.56812 * 359.70051 * 19 18 17 26 26 C 1.32279 * 120.74397 * 0.02562 * 25 19 18 27 27 H 0.97001 * 119.99455 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47683 * 29.47900 * 10 9 7 29 29 H 1.08999 * 109.46873 * 149.48140 * 10 9 7 30 30 H 1.09009 * 109.47169 * 299.99981 * 11 10 9 31 31 H 1.08996 * 109.47492 * 59.99880 * 11 10 9 32 32 H 0.96701 * 117.00288 * 179.97438 * 14 12 11 33 33 H 1.08997 * 109.47338 * 150.00087 * 15 9 7 34 34 H 1.09004 * 109.47056 * 30.00180 * 15 9 7 35 35 H 1.07996 * 120.40308 * 359.97438 * 17 16 15 36 36 H 1.09002 * 110.66859 * 278.15632 * 21 20 19 37 37 H 1.09000 * 110.66769 * 41.28928 * 21 20 19 38 38 H 1.08998 * 110.72785 * 204.22983 * 22 21 20 39 39 H 1.09006 * 110.72223 * 80.94452 * 22 21 20 40 40 H 1.08994 * 110.31005 * 263.03569 * 23 22 21 41 41 H 1.09004 * 110.30804 * 140.87206 * 23 22 21 42 42 H 1.09007 * 109.91420 * 333.50811 * 24 20 19 43 43 H 1.09004 * 109.91945 * 94.80063 * 24 20 19 44 44 H 1.07998 * 120.40179 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0246 -1.2399 -0.3696 9 7 1.4088 -2.3402 0.4668 10 6 1.7175 -3.6355 -0.1439 11 6 0.7371 -3.9071 -1.2866 12 6 1.0541 -5.2399 -1.9145 13 8 1.9707 -5.9041 -1.4917 14 8 0.3192 -5.6887 -2.9441 15 6 0.4568 -2.2623 1.5776 16 6 1.1938 -2.4180 2.8828 17 6 1.3780 -3.6705 3.4469 18 7 2.0345 -3.7729 4.5908 19 6 2.5033 -2.6945 5.2013 20 7 3.1806 -2.8375 6.3999 21 6 2.4642 -2.1461 7.5020 22 6 3.0281 -2.8278 8.7740 23 6 3.1830 -4.3023 8.3362 24 6 3.2576 -4.2597 6.7987 25 7 2.3395 -1.4826 4.6917 26 6 1.6970 -1.3111 3.5482 27 1 -0.4849 0.8401 0.0004 28 1 2.7351 -3.6200 -0.5343 29 1 1.6280 -4.4213 0.6061 30 1 -0.2806 -3.9227 -0.8963 31 1 0.8265 -3.1213 -2.0366 32 1 0.5607 -6.5488 -3.3141 33 1 -0.2813 -3.0583 1.4800 34 1 -0.0465 -1.2956 1.5576 35 1 0.9939 -4.5527 2.9565 36 1 2.6948 -1.0808 7.5021 37 1 1.3892 -2.3081 7.4233 38 1 2.3238 -2.7431 9.6015 39 1 3.9947 -2.4019 9.0435 40 1 2.3195 -4.8849 8.6570 41 1 4.0995 -4.7249 8.7479 42 1 2.4203 -4.8112 6.3708 43 1 4.2005 -4.6897 6.4607 44 1 1.5671 -0.3207 3.1375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:36 Heat of formation + Delta-G solvation = -5.720321 kcal Electronic energy + Delta-G solvation = -26993.436271 eV Core-core repulsion = 23139.990766 eV Total energy + Delta-G solvation = -3853.445505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82259 -39.85651 -38.49751 -36.35529 -35.70940 -33.21708 -32.95267 -32.17664 -30.72487 -29.09976 -28.95215 -25.73915 -24.90655 -24.04313 -22.96085 -21.62203 -20.98060 -20.68506 -19.86582 -17.80427 -17.61705 -17.17925 -16.89255 -16.06788 -15.82344 -15.63893 -14.91334 -14.78100 -14.55654 -13.95558 -13.89225 -13.61670 -13.55630 -12.98044 -12.96547 -12.75696 -12.56375 -12.38065 -12.15809 -11.80563 -11.46345 -11.41648 -11.25411 -11.22815 -10.96308 -10.74261 -10.70732 -10.53568 -10.38486 -10.26465 -10.21298 -10.13296 -10.03376 -9.54368 -8.79380 -8.53377 -7.96296 -6.93082 -6.04393 -3.56753 1.50781 1.66245 2.58187 3.25127 3.35247 3.38736 3.46883 3.53808 4.20587 4.34778 4.42216 4.56340 4.81472 4.87068 5.09439 5.24877 5.26022 5.32322 5.38609 5.39293 5.57786 5.64580 5.67417 5.70700 5.73154 5.75900 5.88172 5.92677 6.00909 6.05601 6.14203 6.24711 6.32997 6.56782 6.58078 6.69522 6.73194 6.82184 6.89796 7.20020 7.37405 7.63694 7.66203 8.20104 8.26687 8.63122 8.91989 9.53842 10.08999 10.96383 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.003997 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.922370 B = 7002.860936 C = 9124.977657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.016 3.984 3 Si 0.891 3.109 4 H -0.283 1.283 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.570 5.570 10 C 0.160 3.840 11 C -0.130 4.130 12 C 0.478 3.522 13 O -0.527 6.527 14 O -0.524 6.524 15 C 0.180 3.820 16 C -0.194 4.194 17 C 0.156 3.844 18 N -0.554 5.554 19 C 0.453 3.547 20 N -0.446 5.446 21 C 0.055 3.945 22 C -0.124 4.124 23 C -0.132 4.132 24 C 0.039 3.961 25 N -0.527 5.527 26 C 0.182 3.818 27 H 0.259 0.741 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.399 0.601 33 H 0.041 0.959 34 H 0.114 0.886 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.696 -7.534 8.966 11.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.185 4.185 3 Si 0.720 3.280 4 H -0.210 1.210 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.288 5.288 10 C 0.033 3.967 11 C -0.171 4.171 12 C 0.321 3.679 13 O -0.416 6.416 14 O -0.335 6.335 15 C 0.053 3.947 16 C -0.202 4.202 17 C -0.010 4.010 18 N -0.273 5.273 19 C 0.096 3.904 20 N -0.168 5.168 21 C -0.072 4.072 22 C -0.162 4.162 23 C -0.170 4.170 24 C -0.088 4.088 25 N -0.243 5.243 26 C 0.014 3.986 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.256 0.744 33 H 0.059 0.941 34 H 0.131 0.869 35 H 0.174 0.826 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.359 -7.050 10.033 12.268 hybrid contribution -0.432 0.059 -1.284 1.356 sum -0.073 -6.991 8.749 11.199 Atomic orbital electron populations 1.69951 1.05495 1.26326 1.50390 1.25071 0.94983 0.98729 0.99748 0.86477 0.79926 0.83405 0.78229 1.21000 1.21091 1.20008 1.19115 0.95352 0.85802 1.38940 0.91692 1.43877 1.50931 1.02473 1.31505 1.20788 0.95973 0.88185 0.91713 1.22365 1.04297 0.89382 1.01048 1.24357 0.78466 0.88749 0.76287 1.90670 1.30348 1.58707 1.61899 1.84649 1.59660 1.41139 1.48075 1.19965 0.89908 1.04366 0.80467 1.22830 1.02857 0.94141 1.00351 1.22873 0.91389 0.97252 0.89531 1.68094 1.13594 1.33413 1.12198 1.20938 0.90700 0.85320 0.93486 1.61367 1.43345 1.12265 0.99796 1.23174 0.95954 0.99848 0.88217 1.22530 1.01829 0.95196 0.96685 1.22447 1.02332 0.96976 0.95250 1.22889 1.03913 0.87664 0.94368 1.67966 1.17361 1.24596 1.14421 1.23018 0.88204 1.00009 0.87344 0.93079 0.92625 0.93697 0.88460 0.87315 0.74403 0.94062 0.86855 0.82558 0.88836 0.93323 0.90656 0.90401 0.91296 0.90824 0.89870 0.90150 0.81679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.08 11.34 55.49 0.63 -21.45 16 2 C 0.02 0.38 4.94 -17.43 -0.09 0.30 16 3 Si 0.89 19.89 29.61 -169.99 -5.03 14.86 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.26 -6.42 9.48 -15.06 -0.14 -6.56 16 8 H 0.07 1.64 7.93 -52.49 -0.42 1.23 16 9 N -0.57 -12.43 2.43 -174.61 -0.43 -12.86 16 10 C 0.16 3.12 4.96 -4.04 -0.02 3.10 16 11 C -0.13 -2.25 6.13 -27.88 -0.17 -2.42 16 12 C 0.48 7.67 8.33 36.01 0.30 7.97 16 13 O -0.53 -9.76 16.74 -18.75 -0.31 -10.07 16 14 O -0.52 -6.83 13.42 -39.24 -0.53 -7.36 16 15 C 0.18 3.65 5.47 -5.19 -0.03 3.62 16 16 C -0.19 -3.72 5.50 -104.35 -0.57 -4.29 16 17 C 0.16 2.78 11.00 -17.22 -0.19 2.59 16 18 N -0.55 -10.09 8.15 -13.93 -0.11 -10.20 16 19 C 0.45 8.42 6.98 -322.81 -2.25 6.17 16 20 N -0.45 -7.10 5.35 -171.43 -0.92 -8.02 16 21 C 0.05 0.71 6.31 -1.90 -0.01 0.70 16 22 C -0.12 -1.20 7.06 -24.87 -0.18 -1.38 16 23 C -0.13 -1.29 6.93 -25.38 -0.18 -1.46 16 24 C 0.04 0.52 6.33 -2.76 -0.02 0.50 16 25 N -0.53 -10.45 10.21 -13.93 -0.14 -10.59 16 26 C 0.18 3.62 11.00 -17.22 -0.19 3.43 16 27 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 28 H 0.06 1.15 7.99 -51.93 -0.42 0.73 16 29 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 30 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 31 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 32 H 0.40 3.30 9.10 45.56 0.41 3.71 16 33 H 0.04 0.76 8.03 -51.93 -0.42 0.34 16 34 H 0.11 2.58 5.29 -51.93 -0.27 2.31 16 35 H 0.16 2.41 8.06 -52.49 -0.42 1.99 16 36 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 0.65 7.99 -51.93 -0.42 0.24 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.19 6.46 -51.92 -0.34 0.86 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.17 3.31 8.06 -52.49 -0.42 2.89 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -29.25 369.40 -10.65 -39.90 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -5.64 Total: 7.98 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -3.74 Total: 12.26 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.97 Total: -63.13 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.84 Total: -17.43 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.25 -10.65 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.176 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds