Wall clock time and date at job start Tue Mar 31 2020 12:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00158 * 2 1 4 4 H 1.48497 * 109.47343 * 270.00623 * 3 2 1 5 5 H 1.48503 * 109.47007 * 30.00423 * 3 2 1 6 6 H 1.48501 * 109.47341 * 150.00385 * 3 2 1 7 7 C 1.38812 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99899 * 156.76259 * 7 2 1 9 9 N 1.36941 * 120.00029 * 336.76482 * 7 2 1 10 10 C 1.46494 * 120.00072 * 145.92873 * 9 7 2 11 11 C 1.53000 * 109.46971 * 269.48029 * 10 9 7 12 12 C 1.50703 * 109.47344 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99346 * 359.97438 * 12 11 10 14 14 O 1.34223 * 120.00404 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99733 * 325.92623 * 9 7 2 16 16 C 1.50698 * 109.47236 * 270.00148 * 15 9 7 17 17 C 1.38600 * 120.72126 * 269.72330 * 16 15 9 18 18 N 1.32285 * 119.19798 * 179.71486 * 17 16 15 19 19 C 1.32492 * 120.73525 * 0.57004 * 18 17 16 20 20 N 1.38409 * 119.21256 * 179.72508 * 19 18 17 21 21 C 1.48528 * 111.00189 * 242.57963 * 20 19 18 22 22 C 1.54937 * 103.22856 * 159.72103 * 21 20 19 23 23 C 1.54593 * 102.91977 * 322.58760 * 22 21 20 24 24 C 1.47904 * 111.00076 * 359.97438 * 20 19 18 25 25 N 1.32487 * 121.56812 * 359.70051 * 19 18 17 26 26 C 1.32279 * 120.74397 * 0.02562 * 25 19 18 27 27 H 0.97001 * 119.99455 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47683 * 29.47900 * 10 9 7 29 29 H 1.08999 * 109.46873 * 149.48140 * 10 9 7 30 30 H 1.09009 * 109.47169 * 299.99981 * 11 10 9 31 31 H 1.08996 * 109.47492 * 59.99880 * 11 10 9 32 32 H 0.96701 * 117.00288 * 179.97438 * 14 12 11 33 33 H 1.08997 * 109.47338 * 150.00087 * 15 9 7 34 34 H 1.09004 * 109.47056 * 30.00180 * 15 9 7 35 35 H 1.07996 * 120.40308 * 359.97438 * 17 16 15 36 36 H 1.09002 * 110.66859 * 278.15632 * 21 20 19 37 37 H 1.09000 * 110.66769 * 41.28928 * 21 20 19 38 38 H 1.08998 * 110.72785 * 204.22983 * 22 21 20 39 39 H 1.09006 * 110.72223 * 80.94452 * 22 21 20 40 40 H 1.08994 * 110.31005 * 263.03569 * 23 22 21 41 41 H 1.09004 * 110.30804 * 140.87206 * 23 22 21 42 42 H 1.09007 * 109.91420 * 333.50811 * 24 20 19 43 43 H 1.09004 * 109.91945 * 94.80063 * 24 20 19 44 44 H 1.07998 * 120.40179 * 180.02562 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0246 -1.2399 -0.3696 9 7 1.4088 -2.3402 0.4668 10 6 1.7175 -3.6355 -0.1439 11 6 0.7371 -3.9071 -1.2866 12 6 1.0541 -5.2399 -1.9145 13 8 1.9707 -5.9041 -1.4917 14 8 0.3192 -5.6887 -2.9441 15 6 0.4568 -2.2623 1.5776 16 6 1.1938 -2.4180 2.8828 17 6 1.3780 -3.6705 3.4469 18 7 2.0345 -3.7729 4.5908 19 6 2.5033 -2.6945 5.2013 20 7 3.1806 -2.8375 6.3999 21 6 2.4642 -2.1461 7.5020 22 6 3.0281 -2.8278 8.7740 23 6 3.1830 -4.3023 8.3362 24 6 3.2576 -4.2597 6.7987 25 7 2.3395 -1.4826 4.6917 26 6 1.6970 -1.3111 3.5482 27 1 -0.4849 0.8401 0.0004 28 1 2.7351 -3.6200 -0.5343 29 1 1.6280 -4.4213 0.6061 30 1 -0.2806 -3.9227 -0.8963 31 1 0.8265 -3.1213 -2.0366 32 1 0.5607 -6.5488 -3.3141 33 1 -0.2813 -3.0583 1.4800 34 1 -0.0465 -1.2956 1.5576 35 1 0.9939 -4.5527 2.9565 36 1 2.6948 -1.0808 7.5021 37 1 1.3892 -2.3081 7.4233 38 1 2.3238 -2.7431 9.6015 39 1 3.9947 -2.4019 9.0435 40 1 2.3195 -4.8849 8.6570 41 1 4.0995 -4.7249 8.7479 42 1 2.4203 -4.8112 6.3708 43 1 4.2005 -4.6897 6.4607 44 1 1.5671 -0.3207 3.1375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601073060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:35 Heat of formation + Delta-G solvation = -22.192745 kcal Electronic energy + Delta-G solvation = -26994.150569 eV Core-core repulsion = 23139.990766 eV Total energy + Delta-G solvation = -3854.159803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21687 -41.13759 -39.66424 -37.89904 -36.98685 -34.69056 -34.23887 -33.91335 -32.07937 -30.59847 -29.95030 -27.34368 -26.46106 -25.49543 -24.31558 -23.00871 -22.16630 -21.71645 -21.34678 -19.12113 -18.88811 -18.72654 -18.42703 -17.40324 -16.98860 -16.88075 -16.66619 -16.07269 -15.91635 -15.52474 -15.36057 -15.18821 -14.77274 -14.41013 -14.16464 -14.09675 -13.91948 -13.51311 -13.26924 -13.21149 -13.16362 -12.76188 -12.48616 -12.43482 -12.38467 -12.20597 -12.13825 -12.06716 -11.78106 -11.76491 -11.71476 -11.52767 -11.39840 -10.88687 -10.60581 -10.05338 -9.31979 -8.71151 -7.90006 -5.44615 0.04760 0.17417 1.29515 1.44173 1.51632 1.58606 2.23424 2.28909 2.51496 2.77986 3.16236 3.22436 3.57683 3.79387 3.83466 3.83952 3.92948 4.11650 4.14886 4.16516 4.25675 4.29280 4.36892 4.50244 4.67016 4.75489 4.77743 4.83655 4.88939 4.94466 4.99714 5.06127 5.12117 5.14433 5.25169 5.29458 5.35475 5.60009 5.66897 5.68506 5.72906 5.81754 6.23106 6.42014 7.08243 7.12166 7.17244 7.75995 8.27501 9.07582 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.003997 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.922370 B = 7002.860936 C = 9124.977657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.011 4.011 3 Si 0.935 3.065 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.270 4.270 8 H 0.049 0.951 9 N -0.581 5.581 10 C 0.163 3.837 11 C -0.121 4.121 12 C 0.493 3.507 13 O -0.553 6.553 14 O -0.515 6.515 15 C 0.189 3.811 16 C -0.202 4.202 17 C 0.165 3.835 18 N -0.556 5.556 19 C 0.449 3.551 20 N -0.461 5.461 21 C 0.051 3.949 22 C -0.114 4.114 23 C -0.123 4.123 24 C 0.035 3.965 25 N -0.546 5.546 26 C 0.171 3.829 27 H 0.257 0.743 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.423 0.577 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.184 0.816 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.905 -9.157 10.169 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.210 4.210 3 Si 0.763 3.237 4 H -0.211 1.211 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.400 4.400 8 H 0.066 0.934 9 N -0.300 5.300 10 C 0.037 3.963 11 C -0.162 4.162 12 C 0.337 3.663 13 O -0.444 6.444 14 O -0.328 6.328 15 C 0.062 3.938 16 C -0.210 4.210 17 C -0.002 4.002 18 N -0.275 5.275 19 C 0.093 3.907 20 N -0.182 5.182 21 C -0.075 4.075 22 C -0.151 4.151 23 C -0.161 4.161 24 C -0.091 4.091 25 N -0.264 5.264 26 C 0.004 3.996 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.285 0.715 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.201 0.799 36 H 0.104 0.896 37 H 0.060 0.940 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.144 -8.697 11.237 14.210 hybrid contribution -0.330 0.477 -1.639 1.739 sum -0.186 -8.220 9.597 12.638 Atomic orbital electron populations 1.70014 1.06002 1.26415 1.51424 1.25396 0.95404 1.00135 1.00076 0.85815 0.78629 0.81480 0.77741 1.21104 1.21029 1.20999 1.19096 0.94833 0.87135 1.38898 0.93355 1.43953 1.51058 1.02490 1.32487 1.20707 0.95543 0.87412 0.92621 1.22038 1.04014 0.90026 1.00073 1.23814 0.78004 0.87968 0.76538 1.90674 1.31469 1.59360 1.62936 1.84563 1.58630 1.42832 1.46758 1.19796 0.89843 1.03712 0.80451 1.22684 1.03438 0.94611 1.00302 1.23267 0.90306 0.97495 0.89130 1.68244 1.13829 1.33093 1.12285 1.21385 0.90013 0.84990 0.94343 1.61423 1.43025 1.14169 0.99633 1.23278 0.95570 0.99692 0.88960 1.22543 1.02617 0.94504 0.95485 1.22445 1.04038 0.97334 0.92295 1.22993 1.03188 0.85894 0.97073 1.67967 1.18227 1.25567 1.14609 1.22947 0.88759 1.00018 0.87827 0.93320 0.94441 0.92563 0.87507 0.88725 0.71520 0.92142 0.89261 0.79888 0.89567 0.93955 0.88116 0.89724 0.89824 0.88930 0.91005 0.90497 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.52 11.34 21.65 0.25 -45.28 16 2 C -0.01 -0.53 4.94 84.86 0.42 -0.11 16 3 Si 0.93 41.68 29.61 68.60 2.03 43.71 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.27 -13.43 9.48 84.03 0.80 -12.64 16 8 H 0.05 2.53 7.93 -2.91 -0.02 2.51 16 9 N -0.58 -25.51 2.43 -706.36 -1.72 -27.22 16 10 C 0.16 6.30 4.96 86.38 0.43 6.73 16 11 C -0.12 -4.08 6.13 29.85 0.18 -3.89 16 12 C 0.49 14.96 8.33 71.24 0.59 15.56 16 13 O -0.55 -19.66 16.74 21.95 0.37 -19.29 16 14 O -0.51 -12.04 13.42 -51.34 -0.69 -12.73 16 15 C 0.19 7.64 5.47 85.63 0.47 8.11 16 16 C -0.20 -7.77 5.50 -19.69 -0.11 -7.88 16 17 C 0.17 5.70 11.00 84.71 0.93 6.63 16 18 N -0.56 -19.76 8.15 -197.99 -1.61 -21.37 16 19 C 0.45 16.61 6.98 261.49 1.83 18.44 16 20 N -0.46 -14.28 5.35 -696.28 -3.73 -18.01 16 21 C 0.05 1.26 6.31 86.65 0.55 1.81 16 22 C -0.11 -1.86 7.06 31.80 0.22 -1.64 16 23 C -0.12 -2.03 6.93 31.47 0.22 -1.81 16 24 C 0.04 0.89 6.33 86.44 0.55 1.43 16 25 N -0.55 -21.98 10.21 -197.99 -2.02 -24.00 16 26 C 0.17 7.00 11.00 84.71 0.93 7.93 16 27 H 0.26 12.76 8.31 -92.71 -0.77 11.99 16 28 H 0.04 1.56 7.99 -2.39 -0.02 1.54 16 29 H 0.06 2.02 8.03 -2.39 -0.02 2.00 16 30 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 31 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 32 H 0.42 5.67 9.10 -74.06 -0.67 5.00 16 33 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16 34 H 0.09 4.14 5.29 -2.38 -0.01 4.12 16 35 H 0.18 5.22 8.06 -2.91 -0.02 5.20 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.04 1.10 7.99 -2.39 -0.02 1.08 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.07 1.96 6.46 -2.38 -0.02 1.95 16 43 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.16 6.49 8.06 -2.91 -0.02 6.47 16 Total: -1.00 -63.04 369.40 1.23 -61.81 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.35 Total: 23.73 kcal Atomic # 6 Polarization: 30.65 SS G_CDS: 8.01 Total: 38.66 kcal Atomic # 7 Polarization: -127.05 SS G_CDS: -8.84 Total: -135.89 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.32 Total: -32.02 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -63.04 1.23 -61.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.621 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds