Wall clock time and date at job start Tue Mar 31 2020 12:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99640 * 2 1 4 4 H 1.48495 * 109.46973 * 270.00192 * 3 2 1 5 5 H 1.48509 * 109.47143 * 29.99620 * 3 2 1 6 6 H 1.48493 * 109.47111 * 149.99935 * 3 2 1 7 7 C 1.37870 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00140 * 265.31295 * 10 9 7 12 12 C 1.53003 * 109.47388 * 264.17748 * 11 10 9 13 13 C 1.53000 * 117.49768 * 243.62463 * 12 11 10 14 14 C 1.52998 * 117.49927 * 175.00030 * 12 11 10 15 15 C 1.34783 * 120.00128 * 85.31814 * 10 9 7 16 16 O 1.21279 * 119.99845 * 185.80741 * 15 10 9 17 17 C 1.50697 * 119.99620 * 5.80619 * 15 10 9 18 18 H 1.09001 * 109.42048 * 312.73233 * 17 15 10 19 19 C 1.53124 * 109.43999 * 192.81712 * 17 15 10 20 20 C 1.53466 * 109.38572 * 170.19810 * 19 17 15 21 21 C 1.50800 * 108.08539 * 48.85943 * 20 19 17 22 22 N 1.29602 * 128.73666 * 164.06197 * 21 20 19 23 23 N 1.28870 * 109.79969 * 180.17503 * 22 21 20 24 24 C 1.31383 * 109.92892 * 359.97438 * 23 22 21 25 25 O 1.35532 * 126.58077 * 179.97438 * 24 23 22 26 26 N 1.35424 * 106.84032 * 359.95260 * 24 23 22 27 27 C 1.46208 * 129.14431 * 180.19533 * 26 24 23 28 28 H 0.96992 * 120.00394 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47300 * 60.00178 * 9 7 2 30 30 H 1.08998 * 109.47113 * 299.99439 * 9 7 2 31 31 H 1.09002 * 109.46719 * 24.17325 * 11 10 9 32 32 H 1.09000 * 109.46894 * 144.17674 * 11 10 9 33 33 H 1.09003 * 115.54555 * 29.32359 * 12 11 10 34 34 H 1.09006 * 117.49664 * 359.97438 * 13 12 11 35 35 H 1.08996 * 117.49921 * 145.01888 * 13 12 11 36 36 H 1.09003 * 117.49485 * 214.97776 * 14 12 11 37 37 H 1.09000 * 117.49867 * 359.97438 * 14 12 11 38 38 H 1.09001 * 109.48804 * 290.16738 * 19 17 15 39 39 H 1.09000 * 109.48465 * 50.20489 * 19 17 15 40 40 H 1.08997 * 109.72670 * 289.22254 * 20 19 17 41 41 H 1.09002 * 109.75382 * 168.51703 * 20 19 17 42 42 H 0.96701 * 113.99711 * 90.03138 * 25 24 23 43 43 H 1.09003 * 109.60728 * 282.67095 * 27 26 24 44 44 H 1.09005 * 109.59764 * 42.98972 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0005 11 6 2.6006 -4.2367 -1.2639 12 6 1.7388 -5.4759 -1.5140 13 6 2.4461 -6.8320 -1.5539 14 6 1.9200 -6.2053 -2.8467 15 6 2.7137 -4.0628 1.1639 16 8 3.5795 -4.9121 1.1578 17 6 2.2085 -3.5110 2.4720 18 1 2.1754 -2.4229 2.4177 19 6 3.1499 -3.9365 3.6022 20 6 2.7801 -3.1801 4.8852 21 6 1.2903 -3.2997 5.0863 22 7 0.5949 -3.0666 6.1548 23 7 -0.6526 -3.2899 5.9211 24 6 -0.8122 -3.6801 4.6767 25 8 -1.9830 -4.0039 4.0756 26 7 0.4175 -3.6963 4.1098 27 6 0.7996 -4.0515 2.7439 28 1 -0.4850 0.8399 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6243 -2.5567 0.8903 31 1 2.4610 -3.5266 -2.0791 32 1 3.6495 -4.5282 -1.2114 33 1 0.7350 -5.4438 -1.0902 34 1 3.5256 -6.8412 -1.4023 35 1 1.9079 -7.6923 -1.1562 36 1 1.0355 -6.6533 -3.2995 37 1 2.6529 -5.8020 -3.5455 38 1 3.0531 -5.0089 3.7718 39 1 4.1782 -3.7035 3.3260 40 1 3.0548 -2.1301 4.7854 41 1 3.3027 -3.6188 5.7352 42 1 -2.4265 -3.2571 3.6505 43 1 0.7963 -5.1359 2.6334 44 1 0.0937 -3.6100 2.0403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646579961.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:59 Heat of formation + Delta-G solvation = 29.066730 kcal Electronic energy + Delta-G solvation = -28200.013977 eV Core-core repulsion = 24348.076952 eV Total energy + Delta-G solvation = -3851.937025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.08194 -39.84139 -37.63419 -37.38919 -36.33726 -35.02020 -33.17775 -32.68341 -31.00807 -28.74537 -27.96122 -26.48549 -24.75281 -23.33726 -22.87372 -22.20455 -22.17117 -20.77886 -19.86112 -18.80594 -18.39586 -17.18007 -16.73683 -16.65363 -15.98230 -15.70890 -15.36597 -14.81448 -14.59406 -14.57687 -14.27387 -14.05187 -13.97541 -13.37048 -13.24693 -12.51729 -12.46755 -12.24518 -12.06029 -11.72739 -11.67806 -11.56098 -11.41176 -11.37230 -11.15326 -11.01870 -10.99201 -10.80249 -10.43958 -10.24526 -10.10593 -10.03586 -9.85987 -9.74828 -9.29666 -8.87207 -8.74988 -7.98177 -6.38876 -4.47371 1.71044 2.24306 2.83494 3.03657 3.10738 3.19645 3.21803 3.52855 3.84481 4.00057 4.16907 4.30384 4.50986 4.65934 4.74691 4.94441 4.95054 5.07898 5.13053 5.15604 5.24327 5.33289 5.38534 5.54118 5.61456 5.72671 5.73127 5.78689 5.91724 5.96565 6.00988 6.04574 6.07681 6.08515 6.23837 6.24749 6.39663 6.55514 6.61667 6.88374 7.27699 7.39947 7.56456 7.82199 8.05333 8.55686 8.73102 8.76283 9.22372 10.67523 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008188 B = 0.005987 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.751880 B = 4675.326339 C = 6490.869037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.233 3.767 10 N -0.591 5.591 11 C 0.150 3.850 12 C -0.162 4.162 13 C -0.173 4.173 14 C -0.180 4.180 15 C 0.530 3.470 16 O -0.558 6.558 17 C -0.122 4.122 18 H 0.126 0.874 19 C -0.104 4.104 20 C -0.033 4.033 21 C 0.195 3.805 22 N -0.282 5.282 23 N -0.294 5.294 24 C 0.353 3.647 25 O -0.439 6.439 26 N -0.473 5.473 27 C 0.118 3.882 28 H 0.267 0.733 29 H 0.040 0.960 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.408 0.592 43 H 0.089 0.911 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -7.744 0.383 7.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.113 3.887 10 N -0.321 5.321 11 C 0.027 3.973 12 C -0.182 4.182 13 C -0.210 4.210 14 C -0.217 4.217 15 C 0.316 3.684 16 O -0.438 6.438 17 C -0.144 4.144 18 H 0.144 0.856 19 C -0.143 4.143 20 C -0.073 4.073 21 C -0.072 4.072 22 N -0.123 5.123 23 N -0.145 5.145 24 C 0.048 3.952 25 O -0.239 6.239 26 N -0.175 5.175 27 C -0.005 4.005 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.266 0.734 43 H 0.107 0.893 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.703 -8.274 1.865 8.651 hybrid contribution 0.107 1.185 -1.864 2.212 sum 1.810 -7.089 0.000 7.316 Atomic orbital electron populations 1.69889 1.06037 1.27635 1.49108 1.24934 0.94880 0.99407 0.94372 0.86513 0.79931 0.82762 0.78481 1.20356 1.20941 1.19610 1.21474 0.93710 0.90287 1.52821 0.91895 1.19592 0.87666 0.82765 0.98639 1.48202 1.45027 1.34131 1.04718 1.20878 0.97559 0.92397 0.86473 1.22779 1.00868 0.93696 1.00831 1.22956 1.00719 0.96356 1.00954 1.22913 1.03219 1.04581 0.91002 1.19851 0.81994 0.81487 0.85055 1.90620 1.31847 1.33663 1.87641 1.21642 0.93402 1.04966 0.94368 0.85610 1.21524 1.00371 1.00661 0.91696 1.20337 0.84149 1.03328 0.99477 1.24645 0.95842 1.01328 0.85368 1.73960 0.97075 1.19378 1.21935 1.74785 1.10588 1.18392 1.10709 1.21771 0.80990 1.03069 0.89349 1.84855 1.28586 1.37828 1.72592 1.46602 1.07677 1.50525 1.12736 1.22034 0.97471 1.01561 0.79447 0.92323 0.94197 0.94692 0.89780 0.90821 0.88020 0.88667 0.89508 0.89118 0.88846 0.90690 0.88878 0.88068 0.87826 0.73379 0.89303 0.87134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.54 13.29 55.43 0.74 -21.80 16 2 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 19.34 29.54 -169.99 -5.02 14.32 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 7 C -0.54 -12.75 8.79 -34.44 -0.30 -13.05 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.23 4.78 4.77 -5.19 -0.02 4.75 16 10 N -0.59 -10.64 2.48 -175.05 -0.43 -11.07 16 11 C 0.15 2.44 5.66 -4.04 -0.02 2.41 16 12 C -0.16 -2.30 5.97 -90.62 -0.54 -2.84 16 13 C -0.17 -2.21 10.18 -26.73 -0.27 -2.49 16 14 C -0.18 -2.11 10.25 -26.73 -0.27 -2.38 16 15 C 0.53 9.33 6.79 -10.98 -0.07 9.25 16 16 O -0.56 -10.70 15.66 5.56 0.09 -10.62 16 17 C -0.12 -1.90 1.69 -91.54 -0.16 -2.05 16 18 H 0.13 2.20 6.95 -51.93 -0.36 1.84 16 19 C -0.10 -1.38 4.60 -26.43 -0.12 -1.50 16 20 C -0.03 -0.41 6.34 -27.59 -0.17 -0.59 16 21 C 0.20 3.08 7.78 -154.44 -1.20 1.88 16 22 N -0.28 -5.05 12.17 32.93 0.40 -4.65 16 23 N -0.29 -5.40 12.24 29.53 0.36 -5.03 16 24 C 0.35 5.78 9.30 -89.29 -0.83 4.95 16 25 O -0.44 -5.91 13.64 -18.29 -0.25 -6.16 16 26 N -0.47 -7.42 3.16 -115.37 -0.36 -7.79 16 27 C 0.12 1.73 6.06 -4.03 -0.02 1.71 16 28 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 29 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 30 H 0.04 0.72 4.51 -51.93 -0.23 0.49 16 31 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 32 H 0.07 1.22 7.26 -51.93 -0.38 0.84 16 33 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 39 H 0.09 1.21 7.99 -51.93 -0.41 0.80 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.41 3.67 9.06 45.56 0.41 4.09 16 43 H 0.09 1.24 8.12 -51.93 -0.42 0.82 16 44 H 0.11 1.67 5.88 -51.93 -0.31 1.37 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -29.36 364.08 -8.57 -37.93 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.45 Total: 7.78 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -4.12 Total: 1.61 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.70 Total: -50.34 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.16 Total: -16.78 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.36 -8.57 -37.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646579961.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.994 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds