Wall clock time and date at job start Tue Mar 31 2020 12:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99640 * 2 1 4 4 H 1.48495 * 109.46973 * 270.00192 * 3 2 1 5 5 H 1.48509 * 109.47143 * 29.99620 * 3 2 1 6 6 H 1.48493 * 109.47111 * 149.99935 * 3 2 1 7 7 C 1.37870 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99783 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00140 * 265.31295 * 10 9 7 12 12 C 1.53003 * 109.47388 * 264.17748 * 11 10 9 13 13 C 1.53000 * 117.49768 * 243.62463 * 12 11 10 14 14 C 1.52998 * 117.49927 * 175.00030 * 12 11 10 15 15 C 1.34783 * 120.00128 * 85.31814 * 10 9 7 16 16 O 1.21279 * 119.99845 * 185.80741 * 15 10 9 17 17 C 1.50697 * 119.99620 * 5.80619 * 15 10 9 18 18 H 1.09001 * 109.42048 * 312.73233 * 17 15 10 19 19 C 1.53124 * 109.43999 * 192.81712 * 17 15 10 20 20 C 1.53466 * 109.38572 * 170.19810 * 19 17 15 21 21 C 1.50800 * 108.08539 * 48.85943 * 20 19 17 22 22 N 1.29602 * 128.73666 * 164.06197 * 21 20 19 23 23 N 1.28870 * 109.79969 * 180.17503 * 22 21 20 24 24 C 1.31383 * 109.92892 * 359.97438 * 23 22 21 25 25 O 1.35532 * 126.58077 * 179.97438 * 24 23 22 26 26 N 1.35424 * 106.84032 * 359.95260 * 24 23 22 27 27 C 1.46208 * 129.14431 * 180.19533 * 26 24 23 28 28 H 0.96992 * 120.00394 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47300 * 60.00178 * 9 7 2 30 30 H 1.08998 * 109.47113 * 299.99439 * 9 7 2 31 31 H 1.09002 * 109.46719 * 24.17325 * 11 10 9 32 32 H 1.09000 * 109.46894 * 144.17674 * 11 10 9 33 33 H 1.09003 * 115.54555 * 29.32359 * 12 11 10 34 34 H 1.09006 * 117.49664 * 359.97438 * 13 12 11 35 35 H 1.08996 * 117.49921 * 145.01888 * 13 12 11 36 36 H 1.09003 * 117.49485 * 214.97776 * 14 12 11 37 37 H 1.09000 * 117.49867 * 359.97438 * 14 12 11 38 38 H 1.09001 * 109.48804 * 290.16738 * 19 17 15 39 39 H 1.09000 * 109.48465 * 50.20489 * 19 17 15 40 40 H 1.08997 * 109.72670 * 289.22254 * 20 19 17 41 41 H 1.09002 * 109.75382 * 168.51703 * 20 19 17 42 42 H 0.96701 * 113.99711 * 90.03138 * 25 24 23 43 43 H 1.09003 * 109.60728 * 282.67095 * 27 26 24 44 44 H 1.09005 * 109.59764 * 42.98972 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0005 11 6 2.6006 -4.2367 -1.2639 12 6 1.7388 -5.4759 -1.5140 13 6 2.4461 -6.8320 -1.5539 14 6 1.9200 -6.2053 -2.8467 15 6 2.7137 -4.0628 1.1639 16 8 3.5795 -4.9121 1.1578 17 6 2.2085 -3.5110 2.4720 18 1 2.1754 -2.4229 2.4177 19 6 3.1499 -3.9365 3.6022 20 6 2.7801 -3.1801 4.8852 21 6 1.2903 -3.2997 5.0863 22 7 0.5949 -3.0666 6.1548 23 7 -0.6526 -3.2899 5.9211 24 6 -0.8122 -3.6801 4.6767 25 8 -1.9830 -4.0039 4.0756 26 7 0.4175 -3.6963 4.1098 27 6 0.7996 -4.0515 2.7439 28 1 -0.4850 0.8399 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6243 -2.5567 0.8903 31 1 2.4610 -3.5266 -2.0791 32 1 3.6495 -4.5282 -1.2114 33 1 0.7350 -5.4438 -1.0902 34 1 3.5256 -6.8412 -1.4023 35 1 1.9079 -7.6923 -1.1562 36 1 1.0355 -6.6533 -3.2995 37 1 2.6529 -5.8020 -3.5455 38 1 3.0531 -5.0089 3.7718 39 1 4.1782 -3.7035 3.3260 40 1 3.0548 -2.1301 4.7854 41 1 3.3027 -3.6188 5.7352 42 1 -2.4265 -3.2571 3.6505 43 1 0.7963 -5.1359 2.6334 44 1 0.0937 -3.6100 2.0403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646579961.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:58 Heat of formation + Delta-G solvation = 10.490921 kcal Electronic energy + Delta-G solvation = -28200.819484 eV Core-core repulsion = 24348.076952 eV Total energy + Delta-G solvation = -3852.742533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.33194 -41.23221 -38.75052 -38.52732 -37.59596 -36.52099 -34.49879 -34.30128 -32.25346 -30.01376 -29.54440 -27.88695 -26.00932 -24.90806 -24.18239 -23.40875 -23.17978 -21.94905 -21.05934 -19.98273 -19.77043 -18.70803 -18.26835 -17.99037 -17.31551 -17.09313 -16.57812 -16.26314 -15.98593 -15.78439 -15.42440 -15.22061 -15.14615 -14.70774 -14.59172 -14.15044 -13.70532 -13.58895 -13.33199 -13.21682 -12.99519 -12.82437 -12.79897 -12.61017 -12.56512 -12.34049 -12.25107 -12.14883 -11.95918 -11.75652 -11.36647 -11.31918 -11.20404 -10.89231 -10.72646 -10.56543 -10.11765 -9.50113 -8.24790 -6.37936 0.51054 1.02289 1.38525 1.43245 1.49626 1.56276 1.65948 2.16068 2.39587 2.68743 2.94252 3.06246 3.15196 3.29512 3.47149 3.55150 3.86682 3.91059 3.98280 4.04528 4.11338 4.15716 4.28554 4.35085 4.41885 4.61702 4.64813 4.70641 4.77991 4.81742 4.82919 4.89448 4.95797 5.00226 5.02935 5.13765 5.19937 5.27923 5.29335 5.50858 5.61906 5.80804 6.02267 6.35361 6.51230 6.77491 7.23430 7.36771 7.48988 8.79651 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.008188 B = 0.005987 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.751880 B = 4675.326339 C = 6490.869037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.249 3.751 10 N -0.593 5.593 11 C 0.150 3.850 12 C -0.180 4.180 13 C -0.170 4.170 14 C -0.159 4.159 15 C 0.530 3.470 16 O -0.572 6.572 17 C -0.117 4.117 18 H 0.107 0.893 19 C -0.096 4.096 20 C -0.028 4.028 21 C 0.197 3.803 22 N -0.308 5.308 23 N -0.325 5.325 24 C 0.355 3.645 25 O -0.438 6.438 26 N -0.476 5.476 27 C 0.126 3.874 28 H 0.267 0.733 29 H 0.024 0.976 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.427 0.573 43 H 0.099 0.901 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 -8.337 0.078 8.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.128 3.872 10 N -0.323 5.323 11 C 0.027 3.973 12 C -0.200 4.200 13 C -0.207 4.207 14 C -0.197 4.197 15 C 0.317 3.683 16 O -0.452 6.452 17 C -0.138 4.138 18 H 0.125 0.875 19 C -0.134 4.134 20 C -0.067 4.067 21 C -0.071 4.071 22 N -0.149 5.149 23 N -0.176 5.176 24 C 0.049 3.951 25 O -0.241 6.241 26 N -0.179 5.179 27 C 0.004 3.996 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.149 0.851 42 H 0.289 0.711 43 H 0.117 0.883 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.402 -8.865 1.550 9.315 hybrid contribution -0.111 1.336 -1.831 2.269 sum 2.290 -7.529 -0.280 7.874 Atomic orbital electron populations 1.69961 1.06957 1.28073 1.50304 1.25511 0.95463 1.01850 0.94443 0.85740 0.78965 0.79865 0.78309 1.20254 1.21108 1.19290 1.21678 0.93384 0.91547 1.51883 0.92809 1.19247 0.87555 0.82563 0.97839 1.48177 1.44670 1.33681 1.05739 1.20933 0.97705 0.93145 0.85546 1.22633 1.00309 0.93493 1.03541 1.22974 1.00327 0.95679 1.01750 1.23020 1.03776 1.02670 0.90207 1.20128 0.81591 0.81136 0.85446 1.90610 1.32429 1.34334 1.87877 1.21575 0.94458 1.03575 0.94223 0.87507 1.21490 0.99945 1.00895 0.91111 1.20513 0.82162 1.04117 0.99906 1.25275 0.97020 1.00014 0.84761 1.73889 0.97230 1.20695 1.23059 1.74703 1.11138 1.19860 1.11876 1.21882 0.81853 1.02142 0.89205 1.84824 1.27731 1.38997 1.72503 1.46676 1.07608 1.50671 1.12909 1.21943 0.96765 1.01986 0.78953 0.92429 0.95796 0.94488 0.90355 0.91334 0.88677 0.89296 0.88526 0.87422 0.87945 0.90395 0.88324 0.87015 0.85051 0.71132 0.88292 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.32 13.29 21.45 0.28 -46.04 16 2 C 0.03 1.38 5.46 84.65 0.46 1.84 16 3 Si 0.95 39.28 29.54 68.60 2.03 41.31 16 4 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -25.54 8.79 25.60 0.22 -25.31 16 8 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 9 C 0.25 10.23 4.77 85.63 0.41 10.64 16 10 N -0.59 -21.23 2.48 -826.13 -2.05 -23.28 16 11 C 0.15 4.80 5.66 86.38 0.49 5.29 16 12 C -0.18 -4.93 5.97 -10.79 -0.06 -4.99 16 13 C -0.17 -4.08 10.18 30.60 0.31 -3.77 16 14 C -0.16 -3.41 10.25 30.59 0.31 -3.09 16 15 C 0.53 18.28 6.79 87.65 0.59 18.87 16 16 O -0.57 -21.34 15.66 -3.02 -0.05 -21.39 16 17 C -0.12 -3.52 1.69 -11.39 -0.02 -3.54 16 18 H 0.11 3.69 6.95 -2.39 -0.02 3.67 16 19 C -0.10 -2.37 4.60 30.79 0.14 -2.23 16 20 C -0.03 -0.63 6.34 30.04 0.19 -0.44 16 21 C 0.20 5.98 7.78 137.84 1.07 7.05 16 22 N -0.31 -10.84 12.17 -49.73 -0.61 -11.45 16 23 N -0.32 -11.85 12.24 -173.86 -2.13 -13.98 16 24 C 0.35 11.39 9.30 179.88 1.67 13.06 16 25 O -0.44 -11.39 13.64 -88.36 -1.21 -12.59 16 26 N -0.48 -14.50 3.16 -630.21 -1.99 -16.49 16 27 C 0.13 3.60 6.06 86.54 0.52 4.12 16 28 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 29 H 0.02 1.07 8.04 -2.39 -0.02 1.05 16 30 H 0.04 1.53 4.51 -2.39 -0.01 1.52 16 31 H 0.08 2.55 8.03 -2.39 -0.02 2.53 16 32 H 0.07 2.25 7.26 -2.39 -0.02 2.23 16 33 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.09 2.25 8.03 -2.38 -0.02 2.23 16 35 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 37 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 39 H 0.10 2.36 7.99 -2.39 -0.02 2.35 16 40 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.43 7.26 9.06 -74.06 -0.67 6.59 16 43 H 0.10 2.64 8.12 -2.39 -0.02 2.62 16 44 H 0.10 3.12 5.88 -2.38 -0.01 3.10 16 Total: -1.00 -61.53 364.08 0.97 -60.56 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.37 Total: 25.84 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 6.32 Total: 17.51 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -6.49 Total: -111.24 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.25 Total: -33.98 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -61.53 0.97 -60.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646579961.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.054 kcal (2) G-P(sol) polarization free energy of solvation -61.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds