Wall clock time and date at job start Tue Mar 31 2020 12:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99823 * 2 1 4 4 H 1.48496 * 109.47194 * 239.99509 * 3 2 1 5 5 H 1.48502 * 109.47106 * 119.99626 * 3 2 1 6 6 H 1.48499 * 109.47172 * 359.97438 * 3 2 1 7 7 C 1.37873 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99912 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00428 * 89.99388 * 10 9 7 12 12 C 1.52998 * 109.46840 * 87.60318 * 11 10 9 13 13 C 1.53005 * 117.50026 * 243.74470 * 12 11 10 14 14 C 1.53007 * 117.49549 * 175.08822 * 12 11 10 15 15 C 1.34782 * 119.99527 * 269.99809 * 10 9 7 16 16 O 1.21277 * 119.99871 * 5.41803 * 15 10 9 17 17 C 1.50697 * 119.99858 * 185.42022 * 15 10 9 18 18 H 1.08997 * 109.44530 * 34.61069 * 17 15 10 19 19 C 1.53119 * 109.44487 * 154.54863 * 17 15 10 20 20 C 1.53477 * 109.37811 * 189.80683 * 19 17 15 21 21 C 1.50805 * 108.07828 * 311.11287 * 20 19 17 22 22 N 1.29602 * 128.73083 * 195.90785 * 21 20 19 23 23 N 1.28876 * 109.79594 * 179.86438 * 22 21 20 24 24 C 1.31386 * 109.92609 * 0.03831 * 23 22 21 25 25 O 1.35532 * 126.57750 * 180.02562 * 24 23 22 26 26 N 1.35430 * 106.84214 * 0.05008 * 24 23 22 27 27 C 1.46205 * 129.13899 * 179.79114 * 26 24 23 28 28 H 0.96989 * 119.99907 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46593 * 299.98813 * 9 7 2 30 30 H 1.08991 * 109.47629 * 59.99610 * 9 7 2 31 31 H 1.08995 * 109.47345 * 207.60447 * 11 10 9 32 32 H 1.09003 * 109.46833 * 327.60733 * 11 10 9 33 33 H 1.08996 * 115.55037 * 29.42218 * 12 11 10 34 34 H 1.08999 * 117.49397 * 0.02562 * 13 12 11 35 35 H 1.08993 * 117.49910 * 145.01930 * 13 12 11 36 36 H 1.09000 * 117.49824 * 214.98174 * 14 12 11 37 37 H 1.08997 * 117.49839 * 359.97438 * 14 12 11 38 38 H 1.09000 * 109.48125 * 309.77107 * 19 17 15 39 39 H 1.08995 * 109.49060 * 69.81207 * 19 17 15 40 40 H 1.08995 * 109.74488 * 70.75653 * 20 19 17 41 41 H 1.08997 * 109.73696 * 191.47125 * 20 19 17 42 42 H 0.96696 * 113.99995 * 90.03079 * 25 24 23 43 43 H 1.09005 * 109.60172 * 77.34184 * 27 26 24 44 44 H 1.08997 * 109.60308 * 316.84931 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 3.1028 1.6965 1.2126 6 1 1.2841 2.7465 -0.0006 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6792 -4.1694 1.2692 12 6 1.7155 -5.2600 1.7411 13 6 0.9656 -5.0208 3.0531 14 6 2.0995 -6.0475 2.9955 15 6 2.6409 -4.1248 -1.1668 16 8 2.3248 -3.6025 -2.2147 17 6 3.5232 -5.3465 -1.1698 18 1 3.2315 -6.0068 -0.3531 19 6 3.3675 -6.0845 -2.5023 20 6 4.0684 -7.4470 -2.4149 21 6 5.4513 -7.2267 -1.8550 22 7 6.4695 -8.0285 -1.8703 23 7 7.4745 -7.4687 -1.2894 24 6 7.1389 -6.2693 -0.8711 25 8 7.9364 -5.3892 -0.2182 26 7 5.8431 -6.0815 -1.2169 27 6 4.9847 -4.9211 -0.9840 28 1 -0.4849 -0.8400 -0.0004 29 1 0.6242 -2.5566 0.8904 30 1 0.6247 -2.5571 -0.8895 31 1 3.6716 -4.5975 1.1284 32 1 2.7275 -3.3784 2.0177 33 1 1.1897 -5.7965 0.9514 34 1 1.1585 -4.0862 3.5798 35 1 -0.0535 -5.4001 3.1266 36 1 1.8259 -7.1019 3.0312 37 1 3.0388 -5.7888 3.4842 38 1 2.3086 -6.2333 -2.7139 39 1 3.8182 -5.4939 -3.2999 40 1 3.5059 -8.1089 -1.7565 41 1 4.1397 -7.8888 -3.4087 42 1 8.4237 -4.7920 -0.8020 43 1 5.2304 -4.1352 -1.6983 44 1 5.1327 -4.5547 0.0318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646579964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:02 Heat of formation + Delta-G solvation = 30.103361 kcal Electronic energy + Delta-G solvation = -27951.106707 eV Core-core repulsion = 24099.214634 eV Total energy + Delta-G solvation = -3851.892073 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.40564 -40.00143 -37.93741 -37.55284 -36.77590 -34.79969 -33.49012 -32.94790 -31.20134 -28.99373 -27.73384 -26.36418 -24.97788 -23.75456 -22.59572 -22.49496 -22.36426 -21.01218 -20.11205 -19.27789 -18.61564 -17.32577 -17.06010 -16.90863 -16.42730 -15.92677 -15.23684 -15.00584 -14.82736 -14.68492 -14.33295 -14.28911 -13.81583 -13.55613 -13.38247 -12.81678 -12.57264 -12.56323 -12.22789 -11.99586 -11.83610 -11.65134 -11.55616 -11.53629 -11.35434 -11.20209 -11.11929 -10.72523 -10.41816 -10.40205 -10.34206 -10.19096 -9.93226 -9.32771 -9.25640 -9.19158 -8.49427 -7.87399 -6.49414 -4.22497 1.39624 1.88536 2.53213 2.90699 3.34274 3.37548 3.39416 3.53547 3.56336 3.78962 3.98525 4.20240 4.29547 4.34703 4.44580 4.68315 4.79353 4.85032 4.88956 4.98386 5.03376 5.06059 5.20837 5.26075 5.32384 5.38703 5.44630 5.51116 5.58725 5.62129 5.73737 5.75401 5.78332 5.89860 5.93728 6.09504 6.22132 6.29190 6.65504 6.94948 7.08688 7.16104 7.89412 8.01539 8.27809 8.45631 8.61144 8.73109 9.47062 10.88125 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.004152 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.772868 B = 6741.776803 C = 7469.117591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.022 3.978 3 Si 1.069 2.931 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.281 1.281 7 C -0.608 4.608 8 H 0.050 0.950 9 C 0.239 3.761 10 N -0.584 5.584 11 C 0.139 3.861 12 C -0.172 4.172 13 C -0.172 4.172 14 C -0.179 4.179 15 C 0.514 3.486 16 O -0.526 6.526 17 C -0.125 4.125 18 H 0.104 0.896 19 C -0.107 4.107 20 C -0.033 4.033 21 C 0.194 3.806 22 N -0.278 5.278 23 N -0.290 5.290 24 C 0.351 3.649 25 O -0.436 6.436 26 N -0.478 5.478 27 C 0.116 3.884 28 H 0.268 0.732 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.407 0.593 43 H 0.100 0.900 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.671 -12.953 1.356 15.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.183 4.183 3 Si 0.897 3.103 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.647 4.647 8 H 0.069 0.931 9 C 0.119 3.881 10 N -0.314 5.314 11 C 0.015 3.985 12 C -0.192 4.192 13 C -0.209 4.209 14 C -0.217 4.217 15 C 0.298 3.702 16 O -0.402 6.402 17 C -0.147 4.147 18 H 0.122 0.878 19 C -0.146 4.146 20 C -0.072 4.072 21 C -0.073 4.073 22 N -0.120 5.120 23 N -0.141 5.141 24 C 0.047 3.953 25 O -0.235 6.235 26 N -0.180 5.180 27 C -0.007 4.007 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.264 0.736 43 H 0.118 0.882 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.026 -12.327 1.145 14.754 hybrid contribution -0.232 -0.068 0.205 0.317 sum 7.795 -12.395 1.350 14.704 Atomic orbital electron populations 1.70810 1.06809 1.30495 1.46117 1.25779 0.96409 1.02560 0.93509 0.83531 0.74954 0.75290 0.76501 1.21418 1.21438 1.20579 1.22184 0.94514 0.91638 1.56324 0.93143 1.19369 0.87930 0.83508 0.97266 1.48050 1.45206 1.34321 1.03850 1.21132 0.95013 0.95016 0.87369 1.22880 1.03138 1.01181 0.91978 1.23021 0.96758 1.00777 1.00304 1.22949 0.99988 0.97244 1.01506 1.19808 0.81705 0.84172 0.84498 1.90718 1.57696 1.60682 1.31069 1.21757 0.93253 0.98220 1.01462 0.87835 1.21562 1.02949 0.94069 0.95979 1.20343 0.85647 0.98654 1.02553 1.24683 0.99531 0.84165 0.98917 1.74008 0.96171 1.24563 1.17249 1.74835 1.20904 1.03951 1.14416 1.21822 0.81739 0.92110 0.99663 1.84903 1.57664 1.48225 1.32729 1.46675 1.11503 1.16326 1.43532 1.21978 0.88281 0.85854 1.04551 0.92191 0.95683 0.94984 0.91410 0.89435 0.87842 0.88373 0.88955 0.88929 0.88795 0.88852 0.89863 0.88324 0.87417 0.73578 0.88209 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.50 13.65 55.43 0.76 -25.74 16 2 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 3 Si 1.07 24.46 29.90 -169.99 -5.08 19.38 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.61 -16.26 9.39 -34.44 -0.32 -16.58 16 8 H 0.05 1.35 7.81 -52.48 -0.41 0.94 16 9 C 0.24 5.69 4.44 -5.19 -0.02 5.67 16 10 N -0.58 -10.84 2.46 -175.07 -0.43 -11.27 16 11 C 0.14 2.01 5.28 -4.05 -0.02 1.98 16 12 C -0.17 -2.15 5.44 -90.61 -0.49 -2.65 16 13 C -0.17 -2.05 10.18 -26.69 -0.27 -2.32 16 14 C -0.18 -1.85 10.25 -26.69 -0.27 -2.12 16 15 C 0.51 9.08 6.73 -10.98 -0.07 9.01 16 16 O -0.53 -11.63 15.91 5.56 0.09 -11.55 16 17 C -0.12 -1.54 1.68 -91.53 -0.15 -1.70 16 18 H 0.10 1.14 6.60 -51.93 -0.34 0.80 16 19 C -0.11 -1.16 4.64 -26.42 -0.12 -1.28 16 20 C -0.03 -0.30 6.34 -27.58 -0.17 -0.47 16 21 C 0.19 2.40 7.78 -154.44 -1.20 1.20 16 22 N -0.28 -4.11 12.17 32.93 0.40 -3.71 16 23 N -0.29 -4.42 12.24 29.53 0.36 -4.06 16 24 C 0.35 4.56 9.30 -89.28 -0.83 3.73 16 25 O -0.44 -4.49 13.64 -18.29 -0.25 -4.74 16 26 N -0.48 -5.81 3.16 -115.37 -0.36 -6.17 16 27 C 0.12 1.36 6.13 -4.02 -0.02 1.34 16 28 H 0.27 7.75 7.22 -40.82 -0.29 7.46 16 29 H 0.03 0.61 7.94 -51.93 -0.41 0.19 16 30 H 0.03 0.86 7.37 -51.93 -0.38 0.48 16 31 H 0.07 0.83 4.92 -51.93 -0.26 0.57 16 32 H 0.09 1.37 7.82 -51.93 -0.41 0.96 16 33 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.22 8.03 -51.93 -0.42 0.81 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.09 0.99 8.11 -51.93 -0.42 0.57 16 39 H 0.08 0.99 8.12 -51.93 -0.42 0.56 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.41 2.09 9.06 45.56 0.41 2.50 16 43 H 0.10 1.21 8.12 -51.93 -0.42 0.78 16 44 H 0.10 1.16 6.43 -51.93 -0.33 0.83 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -34.77 363.89 -8.56 -43.32 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.44 Total: 2.72 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -4.08 Total: -3.67 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.72 Total: -50.95 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.16 Total: -16.29 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -5.08 Total: 19.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.77 -8.56 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646579964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.428 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds