Wall clock time and date at job start Tue Mar 31 2020 12:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99823 * 2 1 4 4 H 1.48496 * 109.47194 * 239.99509 * 3 2 1 5 5 H 1.48502 * 109.47106 * 119.99626 * 3 2 1 6 6 H 1.48499 * 109.47172 * 359.97438 * 3 2 1 7 7 C 1.37873 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99912 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47031 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00428 * 89.99388 * 10 9 7 12 12 C 1.52998 * 109.46840 * 87.60318 * 11 10 9 13 13 C 1.53005 * 117.50026 * 243.74470 * 12 11 10 14 14 C 1.53007 * 117.49549 * 175.08822 * 12 11 10 15 15 C 1.34782 * 119.99527 * 269.99809 * 10 9 7 16 16 O 1.21277 * 119.99871 * 5.41803 * 15 10 9 17 17 C 1.50697 * 119.99858 * 185.42022 * 15 10 9 18 18 H 1.08997 * 109.44530 * 34.61069 * 17 15 10 19 19 C 1.53119 * 109.44487 * 154.54863 * 17 15 10 20 20 C 1.53477 * 109.37811 * 189.80683 * 19 17 15 21 21 C 1.50805 * 108.07828 * 311.11287 * 20 19 17 22 22 N 1.29602 * 128.73083 * 195.90785 * 21 20 19 23 23 N 1.28876 * 109.79594 * 179.86438 * 22 21 20 24 24 C 1.31386 * 109.92609 * 0.03831 * 23 22 21 25 25 O 1.35532 * 126.57750 * 180.02562 * 24 23 22 26 26 N 1.35430 * 106.84214 * 0.05008 * 24 23 22 27 27 C 1.46205 * 129.13899 * 179.79114 * 26 24 23 28 28 H 0.96989 * 119.99907 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46593 * 299.98813 * 9 7 2 30 30 H 1.08991 * 109.47629 * 59.99610 * 9 7 2 31 31 H 1.08995 * 109.47345 * 207.60447 * 11 10 9 32 32 H 1.09003 * 109.46833 * 327.60733 * 11 10 9 33 33 H 1.08996 * 115.55037 * 29.42218 * 12 11 10 34 34 H 1.08999 * 117.49397 * 0.02562 * 13 12 11 35 35 H 1.08993 * 117.49910 * 145.01930 * 13 12 11 36 36 H 1.09000 * 117.49824 * 214.98174 * 14 12 11 37 37 H 1.08997 * 117.49839 * 359.97438 * 14 12 11 38 38 H 1.09000 * 109.48125 * 309.77107 * 19 17 15 39 39 H 1.08995 * 109.49060 * 69.81207 * 19 17 15 40 40 H 1.08995 * 109.74488 * 70.75653 * 20 19 17 41 41 H 1.08997 * 109.73696 * 191.47125 * 20 19 17 42 42 H 0.96696 * 113.99995 * 90.03079 * 25 24 23 43 43 H 1.09005 * 109.60172 * 77.34184 * 27 26 24 44 44 H 1.08997 * 109.60308 * 316.84931 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2124 5 1 3.1028 1.6965 1.2126 6 1 1.2841 2.7465 -0.0006 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6792 -4.1694 1.2692 12 6 1.7155 -5.2600 1.7411 13 6 0.9656 -5.0208 3.0531 14 6 2.0995 -6.0475 2.9955 15 6 2.6409 -4.1248 -1.1668 16 8 2.3248 -3.6025 -2.2147 17 6 3.5232 -5.3465 -1.1698 18 1 3.2315 -6.0068 -0.3531 19 6 3.3675 -6.0845 -2.5023 20 6 4.0684 -7.4470 -2.4149 21 6 5.4513 -7.2267 -1.8550 22 7 6.4695 -8.0285 -1.8703 23 7 7.4745 -7.4687 -1.2894 24 6 7.1389 -6.2693 -0.8711 25 8 7.9364 -5.3892 -0.2182 26 7 5.8431 -6.0815 -1.2169 27 6 4.9847 -4.9211 -0.9840 28 1 -0.4849 -0.8400 -0.0004 29 1 0.6242 -2.5566 0.8904 30 1 0.6247 -2.5571 -0.8895 31 1 3.6716 -4.5975 1.1284 32 1 2.7275 -3.3784 2.0177 33 1 1.1897 -5.7965 0.9514 34 1 1.1585 -4.0862 3.5798 35 1 -0.0535 -5.4001 3.1266 36 1 1.8259 -7.1019 3.0312 37 1 3.0388 -5.7888 3.4842 38 1 2.3086 -6.2333 -2.7139 39 1 3.8182 -5.4939 -3.2999 40 1 3.5059 -8.1089 -1.7565 41 1 4.1397 -7.8888 -3.4087 42 1 8.4237 -4.7920 -0.8020 43 1 5.2304 -4.1352 -1.6983 44 1 5.1327 -4.5547 0.0318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646579964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:01 Heat of formation + Delta-G solvation = 5.407579 kcal Electronic energy + Delta-G solvation = -27952.177596 eV Core-core repulsion = 24099.214634 eV Total energy + Delta-G solvation = -3852.962963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.37671 -41.35882 -38.77584 -38.60232 -37.92384 -36.37282 -34.83255 -34.40148 -32.30892 -30.05663 -29.29133 -27.74523 -26.16788 -25.19069 -23.99958 -23.44502 -23.25911 -22.07941 -21.17249 -20.27224 -19.81405 -19.02795 -18.38126 -17.96669 -17.51689 -17.33282 -16.36241 -16.00538 -15.87008 -15.70904 -15.64264 -15.39365 -15.27331 -14.99751 -14.64960 -14.11928 -13.77264 -13.62959 -13.47747 -13.31371 -13.18667 -12.94466 -12.84099 -12.71619 -12.51166 -12.38978 -12.30717 -12.11115 -11.98314 -11.41806 -11.37486 -11.32024 -11.17678 -10.94755 -10.75906 -10.60889 -10.14995 -9.56045 -8.68099 -6.43946 0.48962 0.91388 1.49119 1.54341 1.57281 1.57810 1.76240 2.03819 2.53032 2.64749 2.84048 3.06587 3.10036 3.18337 3.29064 3.39924 3.72007 3.83044 3.86706 3.93066 4.03035 4.07024 4.18282 4.27119 4.33106 4.43956 4.48301 4.59991 4.67906 4.76642 4.78047 4.79111 4.89174 4.92048 4.94118 5.00358 5.08521 5.18068 5.23958 5.46835 5.49799 5.81655 6.13293 6.35939 6.45662 6.55497 7.18558 7.36318 7.47408 8.67609 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.004152 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.772868 B = 6741.776803 C = 7469.117591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.029 4.029 3 Si 1.114 2.886 4 H -0.279 1.279 5 H -0.263 1.263 6 H -0.283 1.283 7 C -0.614 4.614 8 H 0.047 0.953 9 C 0.253 3.747 10 N -0.588 5.588 11 C 0.139 3.861 12 C -0.185 4.185 13 C -0.187 4.187 14 C -0.148 4.148 15 C 0.512 3.488 16 O -0.577 6.577 17 C -0.109 4.109 18 H 0.126 0.874 19 C -0.103 4.103 20 C -0.023 4.023 21 C 0.199 3.801 22 N -0.306 5.306 23 N -0.324 5.324 24 C 0.358 3.642 25 O -0.438 6.438 26 N -0.477 5.477 27 C 0.122 3.878 28 H 0.256 0.744 29 H 0.018 0.982 30 H -0.006 1.006 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.429 0.571 43 H 0.094 0.906 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.130 -14.209 2.256 17.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.227 4.227 3 Si 0.935 3.065 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.208 1.208 7 C -0.652 4.652 8 H 0.066 0.934 9 C 0.131 3.869 10 N -0.318 5.318 11 C 0.016 3.984 12 C -0.205 4.205 13 C -0.224 4.224 14 C -0.185 4.185 15 C 0.299 3.701 16 O -0.456 6.456 17 C -0.130 4.130 18 H 0.144 0.856 19 C -0.141 4.141 20 C -0.062 4.062 21 C -0.069 4.069 22 N -0.147 5.147 23 N -0.175 5.175 24 C 0.053 3.947 25 O -0.241 6.241 26 N -0.180 5.180 27 C -0.001 4.001 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.012 0.988 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.290 0.710 43 H 0.113 0.887 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.532 -13.628 2.070 16.759 hybrid contribution -0.686 0.328 -0.069 0.764 sum 8.845 -13.300 2.001 16.098 Atomic orbital electron populations 1.70926 1.07817 1.29848 1.48351 1.27211 0.96486 1.06330 0.92704 0.82972 0.74231 0.71481 0.77798 1.20480 1.18796 1.20805 1.22502 0.94501 0.92954 1.55242 0.93433 1.18829 0.88370 0.84733 0.94948 1.48018 1.44424 1.33277 1.06061 1.21311 0.96878 0.95161 0.85021 1.22754 1.03563 1.01473 0.92663 1.23075 0.97908 1.01392 1.00047 1.23038 0.99425 0.97675 0.98387 1.20647 0.81291 0.84938 0.83186 1.90693 1.59603 1.62542 1.32806 1.21643 0.92382 0.95603 1.03395 0.85619 1.21535 1.03357 0.94745 0.94505 1.20482 0.83782 0.97732 1.04194 1.25245 1.00086 0.83627 0.97944 1.73944 0.96775 1.25578 1.18368 1.74763 1.21707 1.05145 1.15887 1.21878 0.82116 0.92025 0.98713 1.84865 1.57578 1.48229 1.33384 1.46651 1.11328 1.16312 1.43679 1.21891 0.87585 0.85618 1.04978 0.93461 0.96420 0.98771 0.88586 0.90926 0.87891 0.89487 0.88492 0.86935 0.87678 0.88531 0.91153 0.85798 0.85407 0.70972 0.88731 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.97 13.65 21.45 0.29 -55.67 16 2 C -0.03 -1.60 5.46 84.65 0.46 -1.14 16 3 Si 1.11 49.08 29.90 68.60 2.05 51.13 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.61 -33.42 9.39 25.60 0.24 -33.18 16 8 H 0.05 2.56 7.81 -2.91 -0.02 2.54 16 9 C 0.25 12.50 4.44 85.63 0.38 12.88 16 10 N -0.59 -21.90 2.46 -826.17 -2.03 -23.92 16 11 C 0.14 3.83 5.28 86.38 0.46 4.28 16 12 C -0.19 -4.29 5.44 -10.79 -0.06 -4.34 16 13 C -0.19 -4.22 10.18 30.62 0.31 -3.91 16 14 C -0.15 -2.56 10.25 30.62 0.31 -2.24 16 15 C 0.51 18.00 6.73 87.66 0.59 18.59 16 16 O -0.58 -26.17 15.91 -3.02 -0.05 -26.22 16 17 C -0.11 -2.46 1.68 -11.39 -0.02 -2.48 16 18 H 0.13 2.35 6.60 -2.39 -0.02 2.33 16 19 C -0.10 -2.02 4.64 30.79 0.14 -1.88 16 20 C -0.02 -0.34 6.34 30.04 0.19 -0.15 16 21 C 0.20 4.42 7.78 137.84 1.07 5.49 16 22 N -0.31 -8.50 12.17 -49.73 -0.61 -9.11 16 23 N -0.32 -9.42 12.24 -173.86 -2.13 -11.55 16 24 C 0.36 8.58 9.30 179.88 1.67 10.25 16 25 O -0.44 -8.00 13.64 -88.36 -1.21 -9.21 16 26 N -0.48 -10.45 3.16 -630.19 -1.99 -12.45 16 27 C 0.12 2.59 6.13 86.55 0.53 3.12 16 28 H 0.26 15.49 7.22 -92.72 -0.67 14.82 16 29 H 0.02 0.90 7.94 -2.39 -0.02 0.88 16 30 H -0.01 -0.33 7.37 -2.39 -0.02 -0.34 16 31 H 0.10 2.08 4.92 -2.39 -0.01 2.06 16 32 H 0.07 2.23 7.82 -2.39 -0.02 2.21 16 33 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 1.88 8.11 -2.39 -0.02 1.86 16 39 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.43 3.40 9.06 -74.06 -0.67 2.73 16 43 H 0.09 2.15 8.12 -2.38 -0.02 2.13 16 44 H 0.11 2.20 6.43 -2.39 -0.02 2.18 16 Total: -1.00 -77.99 363.89 1.09 -76.90 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.47 Total: 14.82 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 6.29 Total: 5.28 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -6.46 Total: -112.70 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.25 Total: -35.43 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.05 Total: 51.13 kcal Total: -77.99 1.09 -76.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646579964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.310 kcal (2) G-P(sol) polarization free energy of solvation -77.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds