Wall clock time and date at job start Tue Mar 31 2020 12:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99600 * 2 1 4 4 H 1.48502 * 109.46926 * 269.99846 * 3 2 1 5 5 H 1.48501 * 109.47418 * 30.00129 * 3 2 1 6 6 H 1.48500 * 109.46868 * 150.00445 * 3 2 1 7 7 C 1.37870 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00537 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99799 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.52432 * 299.91660 * 9 7 2 11 11 C 1.53036 * 109.49870 * 60.00135 * 9 7 2 12 12 C 1.53048 * 109.52706 * 181.30826 * 11 9 7 13 13 C 1.53190 * 109.31222 * 298.64109 * 12 11 9 14 14 N 1.46925 * 108.77708 * 54.63088 * 13 12 11 15 15 C 1.34777 * 120.62851 * 126.40927 * 14 13 12 16 16 O 1.21279 * 120.00035 * 175.31177 * 15 14 13 17 17 C 1.50697 * 120.00043 * 355.31809 * 15 14 13 18 18 H 1.09005 * 109.44536 * 35.26225 * 17 15 14 19 19 C 1.53121 * 109.44467 * 275.32866 * 17 15 14 20 20 C 1.53467 * 109.38337 * 170.20219 * 19 17 15 21 21 C 1.50801 * 108.08533 * 48.87650 * 20 19 17 22 22 N 1.29603 * 128.73582 * 164.09158 * 21 20 19 23 23 N 1.28866 * 109.79665 * 180.11769 * 22 21 20 24 24 C 1.31375 * 109.93134 * 359.96667 * 23 22 21 25 25 O 1.35539 * 126.58328 * 179.97438 * 24 23 22 26 26 N 1.35436 * 106.84487 * 359.95341 * 24 23 22 27 27 C 1.46195 * 129.14530 * 180.18902 * 26 24 23 28 28 C 1.46926 * 118.74157 * 306.39556 * 14 13 12 29 29 H 0.96995 * 119.99944 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46402 * 61.29464 * 11 9 7 31 31 H 1.09000 * 109.45841 * 301.31758 * 11 9 7 32 32 H 1.09002 * 109.49263 * 58.59278 * 12 11 9 33 33 H 1.08997 * 109.49907 * 178.68535 * 12 11 9 34 34 H 1.08997 * 109.58641 * 174.42005 * 13 12 11 35 35 H 1.08999 * 109.58511 * 294.84543 * 13 12 11 36 36 H 1.08995 * 109.48276 * 290.17579 * 19 17 15 37 37 H 1.09001 * 109.48215 * 50.21006 * 19 17 15 38 38 H 1.09000 * 109.74198 * 168.52280 * 20 19 17 39 39 H 1.09005 * 109.74290 * 289.18339 * 20 19 17 40 40 H 0.96698 * 113.99459 * 270.00339 * 25 24 23 41 41 H 1.09005 * 109.60299 * 43.14401 * 27 26 24 42 42 H 1.08993 * 109.61111 * 282.64598 * 27 26 24 43 43 H 1.09000 * 109.58417 * 173.39442 * 28 14 13 44 44 H 1.09000 * 109.58545 * 293.81817 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6256 -2.5578 0.8924 11 6 0.3705 -2.5817 -1.2472 12 6 -0.4196 -3.8923 -1.2304 13 6 0.5567 -5.0727 -1.2478 14 7 1.5003 -4.9225 -0.1318 15 6 1.6785 -5.9209 0.7559 16 8 2.5209 -5.8189 1.6223 17 6 0.8311 -7.1642 0.6716 18 1 0.6271 -7.3942 -0.3742 19 6 -0.4903 -6.9314 1.4095 20 6 -1.4476 -8.0952 1.1193 21 6 -0.6986 -9.3846 1.3443 22 7 -1.1717 -10.5825 1.4898 23 7 -0.2041 -11.4156 1.6639 24 6 0.9451 -10.7795 1.6364 25 8 2.1757 -11.3279 1.7847 26 7 0.6643 -9.4706 1.4310 27 6 1.5806 -8.3374 1.3146 28 6 2.2463 -3.6634 -0.0018 29 1 -0.4850 0.8400 0.0004 30 1 0.9987 -2.5478 -2.1374 31 1 -0.3222 -1.7402 -1.2594 32 1 -1.0294 -3.9378 -0.3280 33 1 -1.0639 -3.9400 -2.1082 34 1 0.0041 -6.0056 -1.1361 35 1 1.1039 -5.0803 -2.1905 36 1 -0.3027 -6.8735 2.4816 37 1 -0.9379 -5.9981 1.0677 38 1 -2.3035 -8.0445 1.7923 39 1 -1.7887 -8.0424 0.0853 40 1 2.4837 -11.3609 2.7007 41 1 2.4291 -8.6158 0.6895 42 1 1.9321 -8.0480 2.3048 43 1 2.8085 -3.6665 0.9320 44 1 2.9313 -3.5561 -0.8429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646610303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:10 Heat of formation + Delta-G solvation = 1.045305 kcal Electronic energy + Delta-G solvation = -27712.769058 eV Core-core repulsion = 23859.616932 eV Total energy + Delta-G solvation = -3853.152125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.46691 -40.29277 -38.00347 -37.50186 -36.61683 -33.88399 -33.42225 -31.63692 -31.31324 -30.16512 -28.97044 -25.91665 -25.18835 -24.33864 -23.37345 -22.55989 -21.87909 -20.73110 -19.62231 -19.29094 -18.31676 -17.48020 -17.19163 -16.49336 -16.08574 -15.67494 -15.27258 -14.97908 -14.87921 -14.70192 -14.20482 -14.14211 -13.72149 -13.56458 -13.01895 -12.92327 -12.85302 -12.55230 -12.35366 -12.14983 -12.09992 -11.87131 -11.50807 -11.37269 -11.07037 -10.98204 -10.83126 -10.51140 -10.44886 -10.33726 -10.07249 -9.98686 -9.67035 -9.49465 -9.25362 -8.96671 -8.50348 -8.12998 -6.12773 -4.20248 1.33697 1.83654 2.47747 2.64186 3.14294 3.22520 3.30192 3.33859 3.48643 3.86810 4.05199 4.18307 4.29791 4.34170 4.67549 4.72091 4.90246 4.95700 5.11029 5.13501 5.19204 5.25673 5.38287 5.44087 5.54247 5.55928 5.60210 5.68570 5.75810 5.93630 6.17159 6.20489 6.23732 6.31167 6.49215 6.61596 6.74632 7.00510 7.02504 7.17572 7.56826 7.69972 7.81229 7.94704 8.21344 8.33132 8.40207 8.83037 9.45518 10.92682 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029348 B = 0.002908 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.843782 B = 9625.551210 C =10110.452803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.114 4.114 12 C -0.134 4.134 13 C 0.103 3.897 14 N -0.595 5.595 15 C 0.520 3.480 16 O -0.548 6.548 17 C -0.125 4.125 18 H 0.106 0.894 19 C -0.117 4.117 20 C -0.031 4.031 21 C 0.192 3.808 22 N -0.277 5.277 23 N -0.290 5.290 24 C 0.351 3.649 25 O -0.436 6.436 26 N -0.480 5.480 27 C 0.122 3.878 28 C 0.117 3.883 29 H 0.261 0.739 30 H 0.036 0.964 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.407 0.593 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 -15.005 0.133 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.152 4.152 12 C -0.173 4.173 13 C -0.020 4.020 14 N -0.326 5.326 15 C 0.306 3.694 16 O -0.426 6.426 17 C -0.146 4.146 18 H 0.124 0.876 19 C -0.156 4.156 20 C -0.070 4.070 21 C -0.075 4.075 22 N -0.118 5.118 23 N -0.141 5.141 24 C 0.047 3.953 25 O -0.236 6.236 26 N -0.182 5.182 27 C -0.001 4.001 28 C -0.004 4.004 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.264 0.736 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.744 -16.077 0.107 16.172 hybrid contribution 1.661 1.967 0.244 2.586 sum -0.083 -14.110 0.350 14.115 Atomic orbital electron populations 1.69854 1.05890 1.26625 1.50291 1.24924 0.94871 0.99123 0.94797 0.86576 0.79934 0.83274 0.78137 1.20648 1.21187 1.19845 1.21051 0.93008 0.90216 1.51248 0.92466 1.18965 0.92869 0.91094 0.94839 0.95221 1.21654 0.99536 0.95412 0.98605 1.22013 0.97564 0.96497 1.01187 1.21886 0.91537 0.99269 0.89274 1.48293 1.41804 1.15906 1.26556 1.19857 0.83606 0.84049 0.81904 1.90693 1.35405 1.80545 1.35978 1.21667 0.96750 0.93638 1.02591 0.87619 1.21702 0.92623 0.99430 1.01829 1.20305 0.97068 0.84898 1.04722 1.24690 0.80415 0.98255 1.04149 1.74015 1.22451 0.97290 1.18082 1.74836 0.93985 1.24401 1.20881 1.21808 0.88477 0.80080 1.04968 1.84901 1.25763 1.79046 1.33862 1.46687 1.08901 1.08395 1.54235 1.21851 0.91123 0.82569 1.04558 1.22083 0.95164 0.81446 1.01709 0.92878 0.94506 0.88466 0.92214 0.92225 0.90980 0.91570 0.89953 0.88297 0.87184 0.88030 0.73588 0.88144 0.87450 0.90188 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 11.31 55.43 0.63 -23.03 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -13.17 8.56 -34.44 -0.29 -13.47 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 9 C 0.04 0.93 2.25 -91.66 -0.21 0.72 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.32 4.96 -26.69 -0.13 -2.45 16 12 C -0.13 -2.03 6.08 -26.61 -0.16 -2.20 16 13 C 0.10 1.32 6.27 -3.71 -0.02 1.29 16 14 N -0.59 -9.28 2.97 -172.79 -0.51 -9.79 16 15 C 0.52 7.62 6.78 -10.99 -0.07 7.55 16 16 O -0.55 -9.88 15.33 5.56 0.09 -9.79 16 17 C -0.12 -1.29 1.70 -91.53 -0.16 -1.44 16 18 H 0.11 0.94 6.26 -51.93 -0.32 0.62 16 19 C -0.12 -1.07 5.07 -26.43 -0.13 -1.20 16 20 C -0.03 -0.24 6.34 -27.59 -0.17 -0.42 16 21 C 0.19 2.18 7.78 -154.44 -1.20 0.98 16 22 N -0.28 -3.89 12.17 32.93 0.40 -3.49 16 23 N -0.29 -4.21 12.24 29.53 0.36 -3.85 16 24 C 0.35 4.24 9.30 -89.28 -0.83 3.41 16 25 O -0.44 -4.05 13.64 -18.31 -0.25 -4.30 16 26 N -0.48 -5.29 3.16 -115.37 -0.36 -5.66 16 27 C 0.12 1.23 6.04 -4.03 -0.02 1.21 16 28 C 0.12 2.26 5.64 -3.72 -0.02 2.24 16 29 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 2.29 6.04 -51.93 -0.31 1.98 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.68 5.36 -51.93 -0.28 0.41 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.41 1.62 9.06 45.56 0.41 2.03 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.11 1.13 7.53 -51.93 -0.39 0.74 16 43 H 0.08 1.68 7.03 -51.93 -0.37 1.32 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -31.99 350.59 -8.37 -40.36 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.45 Total: 1.25 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -3.53 Total: -2.20 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.51 Total: -45.82 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.16 Total: -14.09 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.99 -8.37 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646610303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.406 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds