Wall clock time and date at job start Tue Mar 31 2020 12:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99600 * 2 1 4 4 H 1.48502 * 109.46926 * 269.99846 * 3 2 1 5 5 H 1.48501 * 109.47418 * 30.00129 * 3 2 1 6 6 H 1.48500 * 109.46868 * 150.00445 * 3 2 1 7 7 C 1.37870 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00537 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99799 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.52432 * 299.91660 * 9 7 2 11 11 C 1.53036 * 109.49870 * 60.00135 * 9 7 2 12 12 C 1.53048 * 109.52706 * 181.30826 * 11 9 7 13 13 C 1.53190 * 109.31222 * 298.64109 * 12 11 9 14 14 N 1.46925 * 108.77708 * 54.63088 * 13 12 11 15 15 C 1.34777 * 120.62851 * 126.40927 * 14 13 12 16 16 O 1.21279 * 120.00035 * 175.31177 * 15 14 13 17 17 C 1.50697 * 120.00043 * 355.31809 * 15 14 13 18 18 H 1.09005 * 109.44536 * 35.26225 * 17 15 14 19 19 C 1.53121 * 109.44467 * 275.32866 * 17 15 14 20 20 C 1.53467 * 109.38337 * 170.20219 * 19 17 15 21 21 C 1.50801 * 108.08533 * 48.87650 * 20 19 17 22 22 N 1.29603 * 128.73582 * 164.09158 * 21 20 19 23 23 N 1.28866 * 109.79665 * 180.11769 * 22 21 20 24 24 C 1.31375 * 109.93134 * 359.96667 * 23 22 21 25 25 O 1.35539 * 126.58328 * 179.97438 * 24 23 22 26 26 N 1.35436 * 106.84487 * 359.95341 * 24 23 22 27 27 C 1.46195 * 129.14530 * 180.18902 * 26 24 23 28 28 C 1.46926 * 118.74157 * 306.39556 * 14 13 12 29 29 H 0.96995 * 119.99944 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46402 * 61.29464 * 11 9 7 31 31 H 1.09000 * 109.45841 * 301.31758 * 11 9 7 32 32 H 1.09002 * 109.49263 * 58.59278 * 12 11 9 33 33 H 1.08997 * 109.49907 * 178.68535 * 12 11 9 34 34 H 1.08997 * 109.58641 * 174.42005 * 13 12 11 35 35 H 1.08999 * 109.58511 * 294.84543 * 13 12 11 36 36 H 1.08995 * 109.48276 * 290.17579 * 19 17 15 37 37 H 1.09001 * 109.48215 * 50.21006 * 19 17 15 38 38 H 1.09000 * 109.74198 * 168.52280 * 20 19 17 39 39 H 1.09005 * 109.74290 * 289.18339 * 20 19 17 40 40 H 0.96698 * 113.99459 * 270.00339 * 25 24 23 41 41 H 1.09005 * 109.60299 * 43.14401 * 27 26 24 42 42 H 1.08993 * 109.61111 * 282.64598 * 27 26 24 43 43 H 1.09000 * 109.58417 * 173.39442 * 28 14 13 44 44 H 1.09000 * 109.58545 * 293.81817 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6256 -2.5578 0.8924 11 6 0.3705 -2.5817 -1.2472 12 6 -0.4196 -3.8923 -1.2304 13 6 0.5567 -5.0727 -1.2478 14 7 1.5003 -4.9225 -0.1318 15 6 1.6785 -5.9209 0.7559 16 8 2.5209 -5.8189 1.6223 17 6 0.8311 -7.1642 0.6716 18 1 0.6271 -7.3942 -0.3742 19 6 -0.4903 -6.9314 1.4095 20 6 -1.4476 -8.0952 1.1193 21 6 -0.6986 -9.3846 1.3443 22 7 -1.1717 -10.5825 1.4898 23 7 -0.2041 -11.4156 1.6639 24 6 0.9451 -10.7795 1.6364 25 8 2.1757 -11.3279 1.7847 26 7 0.6643 -9.4706 1.4310 27 6 1.5806 -8.3374 1.3146 28 6 2.2463 -3.6634 -0.0018 29 1 -0.4850 0.8400 0.0004 30 1 0.9987 -2.5478 -2.1374 31 1 -0.3222 -1.7402 -1.2594 32 1 -1.0294 -3.9378 -0.3280 33 1 -1.0639 -3.9400 -2.1082 34 1 0.0041 -6.0056 -1.1361 35 1 1.1039 -5.0803 -2.1905 36 1 -0.3027 -6.8735 2.4816 37 1 -0.9379 -5.9981 1.0677 38 1 -2.3035 -8.0445 1.7923 39 1 -1.7887 -8.0424 0.0853 40 1 2.4837 -11.3609 2.7007 41 1 2.4291 -8.6158 0.6895 42 1 1.9321 -8.0480 2.3048 43 1 2.8085 -3.6665 0.9320 44 1 2.9313 -3.5561 -0.8429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646610303.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:10 Heat of formation + Delta-G solvation = -22.004332 kcal Electronic energy + Delta-G solvation = -27713.768565 eV Core-core repulsion = 23859.616932 eV Total energy + Delta-G solvation = -3854.151632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.34195 -41.46800 -38.79271 -38.69208 -37.71639 -35.41565 -34.40345 -33.08677 -32.41609 -31.58251 -29.82963 -27.31379 -26.65416 -25.38223 -24.34306 -23.41991 -23.31445 -21.86935 -20.83754 -20.10273 -19.50248 -18.69963 -18.14295 -18.02677 -17.15528 -16.88061 -16.52236 -16.24276 -15.80768 -15.70215 -15.23190 -15.10878 -15.00045 -14.83241 -14.56252 -14.26448 -13.76332 -13.66071 -13.57246 -13.27733 -13.08799 -12.86737 -12.81685 -12.66030 -12.58855 -12.28442 -12.14728 -11.86506 -11.82217 -11.59680 -11.33333 -11.29613 -11.16641 -10.86934 -10.68483 -10.40072 -10.12949 -9.51779 -8.10120 -6.24220 0.52370 0.99367 1.40629 1.42940 1.49656 1.52481 1.58584 2.01271 2.43715 2.69267 3.06822 3.17075 3.23120 3.31122 3.51779 3.81796 3.89553 4.08801 4.18701 4.24985 4.29275 4.32655 4.36882 4.54771 4.58667 4.62999 4.67260 4.81774 4.83761 4.86790 4.91180 4.96962 5.00903 5.06468 5.15892 5.31637 5.49567 5.52077 5.58332 5.63902 5.96745 6.16773 6.37033 6.38396 6.50413 6.85273 7.10787 7.43988 7.50579 8.92969 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.029348 B = 0.002908 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.843782 B = 9625.551210 C =10110.452803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.043 3.957 10 H -0.007 1.007 11 C -0.109 4.109 12 C -0.126 4.126 13 C 0.104 3.896 14 N -0.599 5.599 15 C 0.520 3.480 16 O -0.586 6.586 17 C -0.112 4.112 18 H 0.133 0.867 19 C -0.113 4.113 20 C -0.023 4.023 21 C 0.198 3.802 22 N -0.309 5.309 23 N -0.328 5.328 24 C 0.357 3.643 25 O -0.439 6.439 26 N -0.478 5.478 27 C 0.127 3.873 28 C 0.131 3.869 29 H 0.261 0.739 30 H 0.033 0.967 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.429 0.571 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 -16.080 -1.107 16.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.068 0.932 9 C 0.024 3.976 10 H 0.011 0.989 11 C -0.147 4.147 12 C -0.164 4.164 13 C -0.017 4.017 14 N -0.329 5.329 15 C 0.308 3.692 16 O -0.467 6.467 17 C -0.133 4.133 18 H 0.151 0.849 19 C -0.151 4.151 20 C -0.062 4.062 21 C -0.070 4.070 22 N -0.150 5.150 23 N -0.179 5.179 24 C 0.051 3.949 25 O -0.242 6.242 26 N -0.181 5.181 27 C 0.004 3.996 28 C 0.008 3.992 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.290 0.710 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.073 0.927 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.244 -17.181 -1.130 17.364 hybrid contribution 1.877 2.319 0.691 3.062 sum -0.367 -14.862 -0.439 14.873 Atomic orbital electron populations 1.69981 1.06872 1.27120 1.50911 1.25603 0.95651 1.01966 0.94724 0.85699 0.78700 0.79821 0.78287 1.19919 1.21050 1.19802 1.21449 0.93033 0.92086 1.51106 0.93183 1.18854 0.93111 0.91281 0.94370 0.98897 1.21447 0.98820 0.97424 0.97008 1.21911 0.97715 0.94405 1.02409 1.22113 0.90820 1.00050 0.88749 1.48294 1.42118 1.14710 1.27805 1.20545 0.83241 0.84827 0.80596 1.90681 1.37212 1.81468 1.37364 1.21615 0.96220 0.91030 1.04443 0.84924 1.21684 0.92107 1.00218 1.01135 1.20483 0.96598 0.82312 1.06807 1.25304 0.80599 0.98602 1.02512 1.73937 1.22986 0.98349 1.19745 1.74748 0.94965 1.25502 1.22675 1.21872 0.88773 0.80357 1.03924 1.84861 1.24510 1.78784 1.36028 1.46712 1.08981 1.08171 1.54251 1.21808 0.91123 0.82214 1.04416 1.21570 0.94486 0.82597 1.00522 0.92977 0.94811 0.92016 0.92619 0.89296 0.86435 0.90158 0.90986 0.87740 0.85617 0.85290 0.70973 0.87365 0.88171 0.92654 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.54 11.31 21.45 0.24 -49.29 16 2 C 0.02 1.06 5.30 84.65 0.45 1.51 16 3 Si 0.95 42.01 29.54 68.60 2.03 44.03 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.54 -28.22 8.56 25.60 0.22 -28.00 16 8 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.04 1.98 2.25 -11.47 -0.03 1.95 16 10 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 11 C -0.11 -4.40 4.96 30.62 0.15 -4.25 16 12 C -0.13 -3.49 6.08 30.67 0.19 -3.31 16 13 C 0.10 2.26 6.27 86.36 0.54 2.80 16 14 N -0.60 -17.65 2.97 -818.97 -2.43 -20.08 16 15 C 0.52 14.32 6.78 87.66 0.59 14.92 16 16 O -0.59 -20.99 15.33 -3.03 -0.05 -21.04 16 17 C -0.11 -1.94 1.70 -11.38 -0.02 -1.96 16 18 H 0.13 1.64 6.26 -2.38 -0.01 1.63 16 19 C -0.11 -1.69 5.07 30.79 0.16 -1.53 16 20 C -0.02 -0.28 6.34 30.04 0.19 -0.09 16 21 C 0.20 3.99 7.78 137.84 1.07 5.06 16 22 N -0.31 -8.24 12.17 -49.73 -0.61 -8.84 16 23 N -0.33 -9.21 12.24 -173.86 -2.13 -11.34 16 24 C 0.36 8.04 9.30 179.88 1.67 9.71 16 25 O -0.44 -7.39 13.64 -88.43 -1.21 -8.60 16 26 N -0.48 -9.46 3.16 -630.21 -1.99 -11.46 16 27 C 0.13 2.26 6.04 86.55 0.52 2.79 16 28 C 0.13 5.11 5.64 86.35 0.49 5.60 16 29 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 2.95 6.04 -2.39 -0.01 2.94 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.12 1.53 5.36 -2.39 -0.01 1.52 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 37 H 0.10 1.53 8.10 -2.39 -0.02 1.51 16 38 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.13 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.43 2.68 9.06 -74.06 -0.67 2.01 16 41 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.10 1.97 7.53 -2.39 -0.02 1.96 16 43 H 0.05 2.41 7.03 -2.39 -0.02 2.39 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -73.05 350.59 0.42 -72.63 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.37 Total: 8.81 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 6.20 Total: 5.18 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -6.92 Total: -101.02 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.25 Total: -29.64 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -73.05 0.42 -72.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646610303.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.628 kcal (2) G-P(sol) polarization free energy of solvation -73.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds