Wall clock time and date at job start Tue Mar 31 2020 12:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47161 * 240.00170 * 3 2 1 5 5 H 1.48494 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46672 * 120.00660 * 3 2 1 7 7 C 1.37881 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99418 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00338 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49847 * 300.07034 * 9 7 2 11 11 C 1.53045 * 109.49440 * 60.16371 * 9 7 2 12 12 C 1.53038 * 109.53608 * 181.31506 * 11 9 7 13 13 C 1.53622 * 109.24618 * 298.51394 * 12 11 9 14 14 N 1.46924 * 108.54177 * 54.85570 * 13 12 11 15 15 C 1.34780 * 120.62970 * 126.37005 * 14 13 12 16 16 O 1.21282 * 119.99855 * 4.93481 * 15 14 13 17 17 C 1.50697 * 119.99817 * 184.92704 * 15 14 13 18 18 H 1.08999 * 109.44533 * 35.37731 * 17 15 14 19 19 C 1.53126 * 109.44206 * 155.30574 * 17 15 14 20 20 C 1.53413 * 109.40585 * 189.81887 * 19 17 15 21 21 C 1.50801 * 108.06432 * 311.08883 * 20 19 17 22 22 N 1.29612 * 128.73524 * 195.96995 * 21 20 19 23 23 N 1.28872 * 109.79391 * 179.80481 * 22 21 20 24 24 C 1.31376 * 109.93198 * 0.03670 * 23 22 21 25 25 O 1.35537 * 126.58088 * 180.02562 * 24 23 22 26 26 N 1.35429 * 106.84286 * 0.05128 * 24 23 22 27 27 C 1.46205 * 129.14399 * 179.83020 * 26 24 23 28 28 C 1.46929 * 118.73981 * 306.09276 * 14 13 12 29 29 H 0.97002 * 119.99537 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46296 * 301.34015 * 11 9 7 31 31 H 1.09001 * 109.45815 * 61.31568 * 11 9 7 32 32 H 1.08996 * 109.49940 * 58.59319 * 12 11 9 33 33 H 1.09002 * 109.49974 * 178.65286 * 12 11 9 34 34 H 1.08999 * 109.73939 * 295.11804 * 13 12 11 35 35 H 1.09004 * 109.66677 * 174.54928 * 13 12 11 36 36 H 1.08994 * 109.48629 * 309.74948 * 19 17 15 37 37 H 1.09002 * 109.48334 * 69.81051 * 19 17 15 38 38 H 1.09003 * 109.73493 * 191.46098 * 20 19 17 39 39 H 1.09001 * 109.80889 * 70.76031 * 20 19 17 40 40 H 0.96705 * 113.99483 * 270.03399 * 25 24 23 41 41 H 1.08999 * 109.60903 * 77.28302 * 27 26 24 42 42 H 1.09005 * 109.60481 * 316.79332 * 27 26 24 43 43 H 1.08993 * 109.58483 * 173.64396 * 28 14 13 44 44 H 1.09000 * 109.58642 * 294.07611 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6236 -2.5570 0.8889 11 6 0.3736 -2.5823 -1.2517 12 6 -0.4168 -3.8927 -1.2363 13 6 0.5633 -5.0755 -1.2541 14 7 1.4999 -4.9230 -0.1324 15 6 1.6757 -5.9212 0.7560 16 8 1.1268 -6.9890 0.5847 17 6 2.5543 -5.7104 1.9621 18 1 2.4512 -4.6829 2.3110 19 6 2.1303 -6.6719 3.0759 20 6 2.8520 -6.2955 4.3763 21 6 4.3189 -6.1329 4.0668 22 7 5.3218 -6.0983 4.8871 23 7 6.4194 -5.9491 4.2284 24 6 6.1637 -5.8800 2.9416 25 8 7.0693 -5.7248 1.9453 26 7 4.8214 -5.9932 2.8017 27 6 4.0159 -5.9760 1.5817 28 6 2.2460 -3.6640 -0.0011 29 1 -0.4849 0.8401 0.0004 30 1 -0.3189 -1.7406 -1.2663 31 1 1.0041 -2.5493 -2.1402 32 1 -1.0290 -3.9378 -0.3356 33 1 -1.0594 -3.9404 -2.1155 34 1 1.1160 -5.0815 -2.1935 35 1 0.0126 -6.0099 -1.1458 36 1 1.0530 -6.6023 3.2257 37 1 2.3938 -7.6918 2.7955 38 1 2.7169 -7.0862 5.1143 39 1 2.4513 -5.3585 4.7632 40 1 7.2515 -4.8022 1.7197 41 1 4.0934 -6.9398 1.0785 42 1 4.3710 -5.1858 0.9201 43 1 2.8057 -3.6668 0.9341 44 1 2.9331 -3.5573 -0.8405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646610304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:13 Heat of formation + Delta-G solvation = -0.323250 kcal Electronic energy + Delta-G solvation = -28072.549206 eV Core-core repulsion = 24219.337736 eV Total energy + Delta-G solvation = -3853.211470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.36192 -40.27417 -37.89884 -37.47636 -36.60274 -33.59037 -33.44067 -32.22242 -30.89397 -30.20941 -28.85863 -25.73261 -25.23381 -24.49452 -23.35820 -22.46031 -21.79548 -20.63895 -19.59695 -19.09835 -18.48668 -17.46175 -17.02402 -16.33797 -16.25888 -15.65552 -15.54635 -14.90420 -14.68768 -14.51520 -14.48136 -13.95115 -13.75433 -13.40823 -13.02899 -12.93189 -12.73132 -12.50631 -12.36786 -12.06307 -12.00046 -11.81317 -11.39957 -11.24720 -11.12432 -11.04889 -10.93343 -10.48121 -10.35880 -10.32135 -10.14341 -9.98327 -9.87713 -9.46357 -9.13597 -9.06734 -8.58162 -8.18213 -6.20732 -4.30318 1.43922 1.91779 2.56083 2.65127 3.13855 3.17266 3.23803 3.25752 3.56917 3.98725 4.16727 4.23998 4.27280 4.37404 4.78872 4.83223 4.92199 5.04684 5.09204 5.20147 5.33443 5.45872 5.47165 5.54971 5.63341 5.65919 5.73764 5.78179 5.84670 5.90967 5.98195 6.11136 6.28049 6.33316 6.35678 6.56489 6.71773 6.96039 7.12656 7.13101 7.47582 7.64000 7.69198 7.86265 8.13205 8.27407 8.51102 8.72475 9.36411 10.84300 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.004407 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.388271 B = 6351.476001 C = 7777.186547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.041 3.959 10 H 0.031 0.969 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.114 3.886 14 N -0.597 5.597 15 C 0.522 3.478 16 O -0.550 6.550 17 C -0.126 4.126 18 H 0.114 0.886 19 C -0.106 4.106 20 C -0.034 4.034 21 C 0.195 3.805 22 N -0.277 5.277 23 N -0.289 5.289 24 C 0.353 3.647 25 O -0.437 6.437 26 N -0.479 5.479 27 C 0.120 3.880 28 C 0.106 3.894 29 H 0.263 0.737 30 H 0.096 0.904 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.408 0.592 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.959 -9.578 1.432 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C 0.022 3.978 10 H 0.049 0.951 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.328 5.328 15 C 0.308 3.692 16 O -0.429 6.429 17 C -0.147 4.147 18 H 0.132 0.868 19 C -0.144 4.144 20 C -0.073 4.073 21 C -0.072 4.072 22 N -0.119 5.119 23 N -0.140 5.140 24 C 0.048 3.952 25 O -0.237 6.237 26 N -0.182 5.182 27 C -0.003 4.003 28 C -0.016 4.016 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.265 0.735 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.446 -10.598 2.443 11.749 hybrid contribution -0.058 1.756 -1.594 2.372 sum 4.388 -8.842 0.849 9.907 Atomic orbital electron populations 1.69852 1.05927 1.26908 1.49513 1.24922 0.94838 0.99133 0.94609 0.86661 0.79667 0.83033 0.78689 1.20185 1.21149 1.20217 1.20959 0.92759 0.90223 1.52251 0.92625 1.18966 0.92781 0.90837 0.95235 0.95083 1.21640 0.99484 0.95627 0.98356 1.22078 0.97660 0.96321 1.01171 1.21730 0.91324 0.99768 0.87995 1.48354 1.42023 1.15804 1.26640 1.19945 0.82126 0.83908 0.83253 1.90670 1.50573 1.25514 1.76103 1.21715 0.92848 1.03957 0.96226 0.86760 1.21541 1.02021 0.99283 0.91555 1.20344 0.83328 1.04862 0.98794 1.24690 0.98750 1.03830 0.79913 1.74014 0.93846 1.18536 1.25472 1.74833 1.19438 1.20773 0.98971 1.21804 0.79098 1.05163 0.89135 1.84897 1.55524 1.33201 1.50029 1.46606 1.07265 1.54873 1.09416 1.21881 0.89191 1.04940 0.84301 1.22269 0.95579 0.83078 1.00643 0.92669 0.88546 0.94502 0.92344 0.92344 0.91983 0.90087 0.88768 0.90059 0.87453 0.87881 0.73451 0.88484 0.87906 0.91355 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.98 11.32 55.43 0.63 -22.35 16 2 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 19.46 29.54 -169.99 -5.02 14.44 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.52 -12.45 8.56 -34.44 -0.29 -12.75 16 8 H 0.06 1.28 7.74 -52.48 -0.41 0.88 16 9 C 0.04 0.86 2.25 -91.65 -0.21 0.65 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 11 C -0.11 -2.30 4.96 -26.69 -0.13 -2.43 16 12 C -0.13 -2.26 6.10 -26.39 -0.16 -2.42 16 13 C 0.11 1.75 6.45 -3.49 -0.02 1.73 16 14 N -0.60 -9.26 2.97 -172.50 -0.51 -9.77 16 15 C 0.52 7.67 6.77 -10.99 -0.07 7.59 16 16 O -0.55 -9.40 15.69 5.56 0.09 -9.31 16 17 C -0.13 -1.48 1.67 -91.53 -0.15 -1.63 16 18 H 0.11 1.39 6.49 -51.93 -0.34 1.05 16 19 C -0.11 -1.09 4.63 -26.45 -0.12 -1.21 16 20 C -0.03 -0.32 6.34 -27.62 -0.18 -0.50 16 21 C 0.20 2.51 7.78 -154.44 -1.20 1.31 16 22 N -0.28 -4.29 12.17 32.93 0.40 -3.88 16 23 N -0.29 -4.60 12.24 29.53 0.36 -4.23 16 24 C 0.35 4.73 9.30 -89.29 -0.83 3.90 16 25 O -0.44 -4.60 13.64 -18.30 -0.25 -4.85 16 26 N -0.48 -5.92 3.16 -115.37 -0.36 -6.28 16 27 C 0.12 1.31 6.16 -4.02 -0.02 1.28 16 28 C 0.11 1.74 5.15 -3.71 -0.02 1.72 16 29 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.10 2.28 6.05 -51.93 -0.31 1.96 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.24 7.04 -51.93 -0.37 0.88 16 36 H 0.09 0.95 8.11 -51.93 -0.42 0.53 16 37 H 0.08 0.87 8.12 -51.93 -0.42 0.45 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.41 2.26 9.06 45.56 0.41 2.68 16 41 H 0.10 1.05 8.12 -51.93 -0.42 0.62 16 42 H 0.10 1.02 7.28 -51.93 -0.38 0.64 16 43 H 0.07 1.02 4.96 -51.93 -0.26 0.76 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -30.52 349.88 -8.34 -38.85 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.43 Total: 3.28 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -3.51 Total: -1.16 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.51 Total: -46.52 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.16 Total: -14.17 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.52 -8.34 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646610304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.530 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds