Wall clock time and date at job start Tue Mar 31 2020 12:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00071 * 2 1 4 4 H 1.48501 * 109.47161 * 240.00170 * 3 2 1 5 5 H 1.48494 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46672 * 120.00660 * 3 2 1 7 7 C 1.37881 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99418 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00338 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49847 * 300.07034 * 9 7 2 11 11 C 1.53045 * 109.49440 * 60.16371 * 9 7 2 12 12 C 1.53038 * 109.53608 * 181.31506 * 11 9 7 13 13 C 1.53622 * 109.24618 * 298.51394 * 12 11 9 14 14 N 1.46924 * 108.54177 * 54.85570 * 13 12 11 15 15 C 1.34780 * 120.62970 * 126.37005 * 14 13 12 16 16 O 1.21282 * 119.99855 * 4.93481 * 15 14 13 17 17 C 1.50697 * 119.99817 * 184.92704 * 15 14 13 18 18 H 1.08999 * 109.44533 * 35.37731 * 17 15 14 19 19 C 1.53126 * 109.44206 * 155.30574 * 17 15 14 20 20 C 1.53413 * 109.40585 * 189.81887 * 19 17 15 21 21 C 1.50801 * 108.06432 * 311.08883 * 20 19 17 22 22 N 1.29612 * 128.73524 * 195.96995 * 21 20 19 23 23 N 1.28872 * 109.79391 * 179.80481 * 22 21 20 24 24 C 1.31376 * 109.93198 * 0.03670 * 23 22 21 25 25 O 1.35537 * 126.58088 * 180.02562 * 24 23 22 26 26 N 1.35429 * 106.84286 * 0.05128 * 24 23 22 27 27 C 1.46205 * 129.14399 * 179.83020 * 26 24 23 28 28 C 1.46929 * 118.73981 * 306.09276 * 14 13 12 29 29 H 0.97002 * 119.99537 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46296 * 301.34015 * 11 9 7 31 31 H 1.09001 * 109.45815 * 61.31568 * 11 9 7 32 32 H 1.08996 * 109.49940 * 58.59319 * 12 11 9 33 33 H 1.09002 * 109.49974 * 178.65286 * 12 11 9 34 34 H 1.08999 * 109.73939 * 295.11804 * 13 12 11 35 35 H 1.09004 * 109.66677 * 174.54928 * 13 12 11 36 36 H 1.08994 * 109.48629 * 309.74948 * 19 17 15 37 37 H 1.09002 * 109.48334 * 69.81051 * 19 17 15 38 38 H 1.09003 * 109.73493 * 191.46098 * 20 19 17 39 39 H 1.09001 * 109.80889 * 70.76031 * 20 19 17 40 40 H 0.96705 * 113.99483 * 270.03399 * 25 24 23 41 41 H 1.08999 * 109.60903 * 77.28302 * 27 26 24 42 42 H 1.09005 * 109.60481 * 316.79332 * 27 26 24 43 43 H 1.08993 * 109.58483 * 173.64396 * 28 14 13 44 44 H 1.09000 * 109.58642 * 294.07611 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6236 -2.5570 0.8889 11 6 0.3736 -2.5823 -1.2517 12 6 -0.4168 -3.8927 -1.2363 13 6 0.5633 -5.0755 -1.2541 14 7 1.4999 -4.9230 -0.1324 15 6 1.6757 -5.9212 0.7560 16 8 1.1268 -6.9890 0.5847 17 6 2.5543 -5.7104 1.9621 18 1 2.4512 -4.6829 2.3110 19 6 2.1303 -6.6719 3.0759 20 6 2.8520 -6.2955 4.3763 21 6 4.3189 -6.1329 4.0668 22 7 5.3218 -6.0983 4.8871 23 7 6.4194 -5.9491 4.2284 24 6 6.1637 -5.8800 2.9416 25 8 7.0693 -5.7248 1.9453 26 7 4.8214 -5.9932 2.8017 27 6 4.0159 -5.9760 1.5817 28 6 2.2460 -3.6640 -0.0011 29 1 -0.4849 0.8401 0.0004 30 1 -0.3189 -1.7406 -1.2663 31 1 1.0041 -2.5493 -2.1402 32 1 -1.0290 -3.9378 -0.3356 33 1 -1.0594 -3.9404 -2.1155 34 1 1.1160 -5.0815 -2.1935 35 1 0.0126 -6.0099 -1.1458 36 1 1.0530 -6.6023 3.2257 37 1 2.3938 -7.6918 2.7955 38 1 2.7169 -7.0862 5.1143 39 1 2.4513 -5.3585 4.7632 40 1 7.2515 -4.8022 1.7197 41 1 4.0934 -6.9398 1.0785 42 1 4.3710 -5.1858 0.9201 43 1 2.8057 -3.6668 0.9341 44 1 2.9331 -3.5573 -0.8405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646610304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:13 Heat of formation + Delta-G solvation = -21.269512 kcal Electronic energy + Delta-G solvation = -28073.457504 eV Core-core repulsion = 24219.337736 eV Total energy + Delta-G solvation = -3854.119768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.34890 -41.47118 -38.81741 -38.66869 -37.74822 -35.21332 -34.37384 -33.54521 -32.20062 -31.60026 -29.83436 -27.09150 -26.72942 -25.58069 -24.42801 -23.42756 -23.20277 -21.90384 -20.76425 -20.00403 -19.69648 -18.72257 -18.18323 -17.87835 -17.26914 -16.90803 -16.51495 -16.45095 -15.87637 -15.44498 -15.35311 -15.15338 -15.05772 -14.76625 -14.49524 -14.31939 -13.75896 -13.62155 -13.57187 -13.27616 -12.99552 -12.84878 -12.82553 -12.71364 -12.61904 -12.30564 -12.11304 -11.91935 -11.81300 -11.58785 -11.38214 -11.30958 -11.25553 -10.85115 -10.71207 -10.41049 -10.13357 -9.53770 -8.08207 -6.22634 0.51479 0.96724 1.44170 1.45345 1.47200 1.51710 1.59734 1.98382 2.44323 2.67934 3.10104 3.19781 3.20501 3.35624 3.45786 3.82920 3.91125 4.05136 4.13441 4.22144 4.22947 4.29506 4.34257 4.50818 4.53856 4.56344 4.61940 4.79775 4.82243 4.85156 4.94624 4.95759 4.96461 5.09384 5.10327 5.26800 5.42838 5.50874 5.60034 5.64245 5.94380 6.10455 6.33069 6.38576 6.43839 6.89164 7.07094 7.46737 7.49684 8.95034 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.004407 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.388271 B = 6351.476001 C = 7777.186547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.038 3.962 10 H -0.003 1.003 11 C -0.108 4.108 12 C -0.124 4.124 13 C 0.117 3.883 14 N -0.601 5.601 15 C 0.526 3.474 16 O -0.571 6.571 17 C -0.120 4.120 18 H 0.113 0.887 19 C -0.100 4.100 20 C -0.028 4.028 21 C 0.198 3.802 22 N -0.310 5.310 23 N -0.328 5.328 24 C 0.359 3.641 25 O -0.437 6.437 26 N -0.478 5.478 27 C 0.124 3.876 28 C 0.120 3.880 29 H 0.259 0.741 30 H 0.059 0.941 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.430 0.570 41 H 0.102 0.898 42 H 0.117 0.883 43 H 0.086 0.914 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 -10.267 0.953 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.081 0.919 9 C 0.019 3.981 10 H 0.016 0.984 11 C -0.146 4.146 12 C -0.163 4.163 13 C -0.005 4.005 14 N -0.331 5.331 15 C 0.313 3.687 16 O -0.451 6.451 17 C -0.141 4.141 18 H 0.131 0.869 19 C -0.138 4.138 20 C -0.067 4.067 21 C -0.070 4.070 22 N -0.150 5.150 23 N -0.179 5.179 24 C 0.053 3.947 25 O -0.240 6.240 26 N -0.181 5.181 27 C 0.001 3.999 28 C -0.001 4.001 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.291 0.709 41 H 0.120 0.880 42 H 0.135 0.865 43 H 0.104 0.896 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.393 -11.277 1.959 12.653 hybrid contribution -0.366 1.968 -1.487 2.494 sum 5.026 -9.309 0.473 10.590 Atomic orbital electron populations 1.70002 1.07160 1.27074 1.51044 1.25612 0.95425 1.02036 0.94907 0.85812 0.78461 0.79746 0.78812 1.19538 1.21798 1.19844 1.21402 0.93328 0.91369 1.50733 0.91901 1.18900 0.93298 0.91940 0.94002 0.98444 1.21462 0.98967 0.96149 0.98025 1.21949 0.97740 0.95262 1.01309 1.21717 0.91190 0.98792 0.88833 1.48364 1.42121 1.15640 1.27024 1.20308 0.81855 0.83179 0.83337 1.90667 1.51531 1.26330 1.76584 1.21669 0.92913 1.04308 0.95247 0.86861 1.21510 1.02281 0.98693 0.91335 1.20490 0.81149 1.06274 0.98782 1.25253 0.99541 1.02419 0.79824 1.73930 0.94437 1.20148 1.26534 1.74734 1.20206 1.22638 1.00317 1.21856 0.79736 1.04009 0.89096 1.84867 1.54825 1.35340 1.48970 1.46663 1.07033 1.54738 1.09668 1.21933 0.88301 1.05778 0.83872 1.22005 0.94358 0.81687 1.02098 0.93184 0.92212 0.94390 0.93942 0.90467 0.90260 0.89723 0.88403 0.90296 0.85469 0.86593 0.70878 0.88021 0.86495 0.89626 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.46 11.32 21.45 0.24 -48.22 16 2 C 0.02 0.98 5.30 84.66 0.45 1.42 16 3 Si 0.95 39.70 29.54 68.60 2.03 41.72 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.53 -24.87 8.56 25.60 0.22 -24.65 16 8 H 0.06 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.04 1.57 2.25 -11.46 -0.03 1.55 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.11 -4.37 4.96 30.62 0.15 -4.22 16 12 C -0.12 -4.09 6.10 30.82 0.19 -3.90 16 13 C 0.12 3.34 6.45 86.51 0.56 3.90 16 14 N -0.60 -17.35 2.97 -818.07 -2.43 -19.78 16 15 C 0.53 14.28 6.77 87.66 0.59 14.87 16 16 O -0.57 -18.33 15.69 -3.04 -0.05 -18.38 16 17 C -0.12 -2.53 1.67 -11.38 -0.02 -2.55 16 18 H 0.11 2.47 6.49 -2.39 -0.02 2.46 16 19 C -0.10 -1.83 4.63 30.77 0.14 -1.68 16 20 C -0.03 -0.46 6.34 30.02 0.19 -0.27 16 21 C 0.20 4.75 7.78 137.84 1.07 5.82 16 22 N -0.31 -9.33 12.17 -49.72 -0.61 -9.93 16 23 N -0.33 -10.20 12.24 -173.86 -2.13 -12.33 16 24 C 0.36 9.04 9.30 179.88 1.67 10.71 16 25 O -0.44 -8.27 13.64 -88.41 -1.21 -9.47 16 26 N -0.48 -10.83 3.16 -630.19 -1.99 -12.82 16 27 C 0.12 2.36 6.16 86.55 0.53 2.89 16 28 C 0.12 3.70 5.15 86.36 0.44 4.15 16 29 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 30 H 0.06 2.89 6.05 -2.39 -0.01 2.87 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 2.41 7.04 -2.39 -0.02 2.40 16 36 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16 37 H 0.08 1.51 8.12 -2.39 -0.02 1.50 16 38 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.43 3.69 9.06 -74.05 -0.67 3.02 16 41 H 0.10 1.90 8.12 -2.39 -0.02 1.88 16 42 H 0.12 1.91 7.28 -2.38 -0.02 1.89 16 43 H 0.09 2.34 4.96 -2.39 -0.01 2.32 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -66.18 349.88 0.40 -65.78 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.37 Total: 15.39 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.17 Total: 8.04 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -6.91 Total: -103.08 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -1.25 Total: -27.85 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.72 kcal Total: -66.18 0.40 -65.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646610304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.512 kcal (2) G-P(sol) polarization free energy of solvation -66.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds