Wall clock time and date at job start Tue Mar 31 2020 12:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00052 * 2 1 4 4 H 1.48501 * 109.46925 * 269.99934 * 3 2 1 5 5 H 1.48488 * 109.47130 * 29.99641 * 3 2 1 6 6 H 1.48501 * 109.46925 * 150.00083 * 3 2 1 7 7 C 1.37878 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99950 * 0.27518 * 7 2 1 10 10 H 1.09001 * 109.50146 * 59.72655 * 9 7 2 11 11 C 1.53048 * 109.49806 * 299.65783 * 9 7 2 12 12 C 1.53039 * 109.54092 * 178.68168 * 11 9 7 13 13 C 1.53192 * 109.31286 * 61.36494 * 12 11 9 14 14 N 1.46931 * 108.77942 * 305.37091 * 13 12 11 15 15 C 1.34771 * 120.62904 * 233.60718 * 14 13 12 16 16 O 1.21284 * 119.99968 * 175.62287 * 15 14 13 17 17 C 1.50701 * 120.00186 * 355.62439 * 15 14 13 18 18 H 1.09005 * 109.43790 * 37.87060 * 17 15 14 19 19 C 1.53124 * 109.44365 * 157.79494 * 17 15 14 20 20 C 1.53467 * 109.38077 * 189.79865 * 19 17 15 21 21 C 1.50798 * 108.08632 * 311.12825 * 20 19 17 22 22 N 1.29604 * 128.73566 * 195.93187 * 21 20 19 23 23 N 1.28868 * 109.79721 * 179.86404 * 22 21 20 24 24 C 1.31385 * 109.93036 * 0.02941 * 23 22 21 25 25 O 1.35532 * 126.58031 * 180.02562 * 24 23 22 26 26 N 1.35424 * 106.83956 * 0.04559 * 24 23 22 27 27 C 1.46210 * 129.14304 * 179.82064 * 26 24 23 28 28 C 1.46936 * 118.76479 * 53.57856 * 14 13 12 29 29 H 0.96996 * 120.00122 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46059 * 298.70915 * 11 9 7 31 31 H 1.09003 * 109.45619 * 58.67844 * 11 9 7 32 32 H 1.08999 * 109.49888 * 181.31938 * 12 11 9 33 33 H 1.09002 * 109.49962 * 301.38836 * 12 11 9 34 34 H 1.09003 * 109.58517 * 65.15175 * 13 12 11 35 35 H 1.08992 * 109.59294 * 185.43275 * 13 12 11 36 36 H 1.08998 * 109.48469 * 309.77133 * 19 17 15 37 37 H 1.09005 * 109.48108 * 69.82767 * 19 17 15 38 38 H 1.09003 * 109.74360 * 70.77152 * 20 19 17 39 39 H 1.08996 * 109.74093 * 191.47821 * 20 19 17 40 40 H 0.96703 * 113.99618 * 269.97503 * 25 24 23 41 41 H 1.08999 * 109.60024 * 77.33613 * 27 26 24 42 42 H 1.08997 * 109.60460 * 316.85190 * 27 26 24 43 43 H 1.08995 * 109.61526 * 186.64667 * 28 14 13 44 44 H 1.09003 * 109.55716 * 66.21996 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 -0.0052 10 1 0.6242 -2.5535 -0.8952 11 6 0.3722 -2.5870 1.2447 12 6 -0.4183 -3.8973 1.2236 13 6 0.5577 -5.0780 1.2348 14 7 1.4999 -4.9235 0.1180 15 6 1.6764 -5.9181 -0.7741 16 8 2.3963 -5.7498 -1.7355 17 6 0.9791 -7.2395 -0.5771 18 1 -0.0214 -7.0662 -0.1807 19 6 0.8760 -7.9667 -1.9207 20 6 -0.0416 -9.1875 -1.7700 21 6 0.3998 -9.9573 -0.5507 22 7 0.1059 -11.1722 -0.2083 23 7 0.6848 -11.4639 0.9055 24 6 1.3829 -10.4352 1.3303 25 8 2.1229 -10.3740 2.4642 26 7 1.2209 -9.4475 0.4181 27 6 1.7782 -8.0958 0.4124 28 6 2.2460 -3.6640 -0.0086 29 1 -0.4850 0.8400 -0.0004 30 1 1.0016 -2.5569 2.1341 31 1 -0.3205 -1.7455 1.2614 32 1 -1.0614 -3.9485 2.1022 33 1 -1.0297 -3.9388 0.3222 34 1 1.1063 -5.0896 2.1767 35 1 0.0047 -6.0105 1.1227 36 1 0.4620 -7.2909 -2.6691 37 1 1.8675 -8.2935 -2.2342 38 1 -1.0735 -8.8593 -1.6444 39 1 0.0391 -9.8202 -2.6539 40 1 1.6331 -10.0610 3.2370 41 1 2.8230 -8.1323 0.1038 42 1 1.7043 -7.6655 1.4111 43 1 2.8064 -3.6630 -0.9434 44 1 2.9326 -3.5605 0.8317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646610305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:16 Heat of formation + Delta-G solvation = 2.046167 kcal Electronic energy + Delta-G solvation = -27716.184846 eV Core-core repulsion = 23863.076121 eV Total energy + Delta-G solvation = -3853.108725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.50982 -40.29018 -38.05231 -37.53945 -36.61660 -33.71409 -33.60548 -31.75011 -31.30964 -30.18676 -28.98694 -25.81087 -25.24371 -24.56605 -23.27290 -22.60616 -21.89586 -20.79279 -19.55136 -19.24228 -18.52725 -17.53458 -17.09561 -16.40800 -16.37564 -15.72998 -15.50861 -14.91424 -14.70087 -14.60326 -14.52387 -13.97565 -13.84696 -13.58004 -13.00436 -12.91621 -12.84196 -12.62628 -12.30217 -12.17566 -12.05663 -11.95228 -11.54747 -11.34607 -11.08192 -10.98698 -10.82267 -10.52283 -10.49239 -10.42890 -10.09244 -9.98648 -9.69003 -9.51265 -9.28431 -8.97046 -8.51328 -8.14474 -6.13043 -4.20576 1.29611 1.76208 2.43994 2.62436 3.11698 3.22706 3.30005 3.33032 3.42732 3.85517 4.05964 4.13525 4.21851 4.33435 4.64956 4.67945 4.75575 4.91603 4.99829 5.15688 5.17847 5.22067 5.34148 5.38338 5.50816 5.55064 5.63655 5.66416 5.82817 5.90109 6.14551 6.17729 6.20316 6.28716 6.46944 6.59175 6.73647 6.98058 6.98613 7.16081 7.56299 7.67992 7.80780 7.93870 8.21226 8.32816 8.36712 8.82836 9.45201 10.92562 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.002928 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.411794 B = 9561.918156 C = 9806.488807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.030 0.970 11 C -0.113 4.113 12 C -0.135 4.135 13 C 0.105 3.895 14 N -0.598 5.598 15 C 0.517 3.483 16 O -0.537 6.537 17 C -0.126 4.126 18 H 0.108 0.892 19 C -0.108 4.108 20 C -0.034 4.034 21 C 0.195 3.805 22 N -0.276 5.276 23 N -0.289 5.289 24 C 0.351 3.649 25 O -0.435 6.435 26 N -0.480 5.480 27 C 0.121 3.879 28 C 0.116 3.884 29 H 0.261 0.739 30 H 0.036 0.964 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.406 0.594 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.081 0.919 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 -15.113 3.398 15.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.048 0.952 11 C -0.151 4.151 12 C -0.173 4.173 13 C -0.018 4.018 14 N -0.329 5.329 15 C 0.302 3.698 16 O -0.414 6.414 17 C -0.147 4.147 18 H 0.126 0.874 19 C -0.146 4.146 20 C -0.073 4.073 21 C -0.072 4.072 22 N -0.118 5.118 23 N -0.140 5.140 24 C 0.047 3.953 25 O -0.235 6.235 26 N -0.183 5.183 27 C -0.003 4.003 28 C -0.005 4.005 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.264 0.736 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.099 0.901 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.314 -16.443 2.689 16.714 hybrid contribution 0.707 2.511 0.812 2.732 sum -0.608 -13.932 3.501 14.378 Atomic orbital electron populations 1.69855 1.05919 1.26634 1.50273 1.24932 0.94865 0.99149 0.94792 0.86571 0.79845 0.83241 0.78231 1.20603 1.21207 1.19857 1.21049 0.92995 0.90211 1.51274 0.92449 1.18966 0.92894 0.91143 0.94825 0.95182 1.21646 0.99499 0.95313 0.98643 1.22007 0.97573 0.96557 1.01202 1.21853 0.91517 0.99185 0.89289 1.48369 1.41739 1.16221 1.26601 1.19896 0.82175 0.84732 0.82973 1.90713 1.39293 1.82011 1.29398 1.21732 1.01239 0.94019 0.97746 0.87443 1.21576 1.01475 0.95879 0.95704 1.20359 1.00483 0.94845 0.91609 1.24724 0.94806 0.92964 0.94733 1.74026 1.19868 1.10712 1.07196 1.74850 1.10297 1.21287 1.07523 1.21814 0.98113 0.86055 0.89323 1.84926 1.35432 1.87416 1.15703 1.46643 1.38344 1.13360 1.19952 1.21853 0.98924 0.77884 1.01602 1.22084 0.95105 0.81573 1.01712 0.92875 0.94497 0.88509 0.92304 0.92205 0.91656 0.91365 0.88529 0.89893 0.88057 0.87361 0.73624 0.88268 0.88119 0.90057 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.84 11.33 55.43 0.63 -23.21 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -13.22 8.56 -34.44 -0.29 -13.51 16 8 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.04 0.92 2.25 -91.65 -0.21 0.72 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.31 4.96 -26.69 -0.13 -2.44 16 12 C -0.14 -2.09 6.08 -26.61 -0.16 -2.26 16 13 C 0.10 1.31 6.00 -3.71 -0.02 1.29 16 14 N -0.60 -9.22 2.97 -172.76 -0.51 -9.74 16 15 C 0.52 7.53 6.80 -10.99 -0.07 7.46 16 16 O -0.54 -9.83 15.63 5.55 0.09 -9.75 16 17 C -0.13 -1.26 1.70 -91.54 -0.16 -1.42 16 18 H 0.11 0.94 6.19 -51.93 -0.32 0.62 16 19 C -0.11 -1.00 4.61 -26.43 -0.12 -1.12 16 20 C -0.03 -0.27 6.34 -27.59 -0.17 -0.44 16 21 C 0.19 2.16 7.78 -154.44 -1.20 0.96 16 22 N -0.28 -3.81 12.17 32.93 0.40 -3.41 16 23 N -0.29 -4.09 12.24 29.53 0.36 -3.73 16 24 C 0.35 4.06 9.30 -89.28 -0.83 3.23 16 25 O -0.44 -3.82 13.64 -18.29 -0.25 -4.07 16 26 N -0.48 -5.03 3.16 -115.38 -0.36 -5.39 16 27 C 0.12 1.10 6.27 -4.03 -0.03 1.08 16 28 C 0.12 2.23 5.66 -3.70 -0.02 2.21 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 2.30 6.06 -51.93 -0.31 1.99 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.65 5.39 -51.93 -0.28 0.37 16 36 H 0.10 0.92 8.11 -51.93 -0.42 0.49 16 37 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.41 1.35 9.06 45.56 0.41 1.77 16 41 H 0.10 0.97 8.12 -51.93 -0.42 0.55 16 42 H 0.10 0.74 7.82 -51.93 -0.41 0.34 16 43 H 0.08 1.70 7.00 -51.93 -0.36 1.34 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 350.68 15.07 5.28 5.28 Total: -1.00 -32.41 350.68 -8.36 -40.78 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.46 Total: 0.65 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.52 Total: -2.67 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.51 Total: -45.48 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.16 Total: -13.82 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.41 -8.36 -40.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646610305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.823 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds