Wall clock time and date at job start Tue Mar 31 2020 12:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00052 * 2 1 4 4 H 1.48501 * 109.46925 * 269.99934 * 3 2 1 5 5 H 1.48488 * 109.47130 * 29.99641 * 3 2 1 6 6 H 1.48501 * 109.46925 * 150.00083 * 3 2 1 7 7 C 1.37878 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99993 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99950 * 0.27518 * 7 2 1 10 10 H 1.09001 * 109.50146 * 59.72655 * 9 7 2 11 11 C 1.53048 * 109.49806 * 299.65783 * 9 7 2 12 12 C 1.53039 * 109.54092 * 178.68168 * 11 9 7 13 13 C 1.53192 * 109.31286 * 61.36494 * 12 11 9 14 14 N 1.46931 * 108.77942 * 305.37091 * 13 12 11 15 15 C 1.34771 * 120.62904 * 233.60718 * 14 13 12 16 16 O 1.21284 * 119.99968 * 175.62287 * 15 14 13 17 17 C 1.50701 * 120.00186 * 355.62439 * 15 14 13 18 18 H 1.09005 * 109.43790 * 37.87060 * 17 15 14 19 19 C 1.53124 * 109.44365 * 157.79494 * 17 15 14 20 20 C 1.53467 * 109.38077 * 189.79865 * 19 17 15 21 21 C 1.50798 * 108.08632 * 311.12825 * 20 19 17 22 22 N 1.29604 * 128.73566 * 195.93187 * 21 20 19 23 23 N 1.28868 * 109.79721 * 179.86404 * 22 21 20 24 24 C 1.31385 * 109.93036 * 0.02941 * 23 22 21 25 25 O 1.35532 * 126.58031 * 180.02562 * 24 23 22 26 26 N 1.35424 * 106.83956 * 0.04559 * 24 23 22 27 27 C 1.46210 * 129.14304 * 179.82064 * 26 24 23 28 28 C 1.46936 * 118.76479 * 53.57856 * 14 13 12 29 29 H 0.96996 * 120.00122 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.46059 * 298.70915 * 11 9 7 31 31 H 1.09003 * 109.45619 * 58.67844 * 11 9 7 32 32 H 1.08999 * 109.49888 * 181.31938 * 12 11 9 33 33 H 1.09002 * 109.49962 * 301.38836 * 12 11 9 34 34 H 1.09003 * 109.58517 * 65.15175 * 13 12 11 35 35 H 1.08992 * 109.59294 * 185.43275 * 13 12 11 36 36 H 1.08998 * 109.48469 * 309.77133 * 19 17 15 37 37 H 1.09005 * 109.48108 * 69.82767 * 19 17 15 38 38 H 1.09003 * 109.74360 * 70.77152 * 20 19 17 39 39 H 1.08996 * 109.74093 * 191.47821 * 20 19 17 40 40 H 0.96703 * 113.99618 * 269.97503 * 25 24 23 41 41 H 1.08999 * 109.60024 * 77.33613 * 27 26 24 42 42 H 1.08997 * 109.60460 * 316.85190 * 27 26 24 43 43 H 1.08995 * 109.61526 * 186.64667 * 28 14 13 44 44 H 1.09003 * 109.55716 * 66.21996 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 -0.0052 10 1 0.6242 -2.5535 -0.8952 11 6 0.3722 -2.5870 1.2447 12 6 -0.4183 -3.8973 1.2236 13 6 0.5577 -5.0780 1.2348 14 7 1.4999 -4.9235 0.1180 15 6 1.6764 -5.9181 -0.7741 16 8 2.3963 -5.7498 -1.7355 17 6 0.9791 -7.2395 -0.5771 18 1 -0.0214 -7.0662 -0.1807 19 6 0.8760 -7.9667 -1.9207 20 6 -0.0416 -9.1875 -1.7700 21 6 0.3998 -9.9573 -0.5507 22 7 0.1059 -11.1722 -0.2083 23 7 0.6848 -11.4639 0.9055 24 6 1.3829 -10.4352 1.3303 25 8 2.1229 -10.3740 2.4642 26 7 1.2209 -9.4475 0.4181 27 6 1.7782 -8.0958 0.4124 28 6 2.2460 -3.6640 -0.0086 29 1 -0.4850 0.8400 -0.0004 30 1 1.0016 -2.5569 2.1341 31 1 -0.3205 -1.7455 1.2614 32 1 -1.0614 -3.9485 2.1022 33 1 -1.0297 -3.9388 0.3222 34 1 1.1063 -5.0896 2.1767 35 1 0.0047 -6.0105 1.1227 36 1 0.4620 -7.2909 -2.6691 37 1 1.8675 -8.2935 -2.2342 38 1 -1.0735 -8.8593 -1.6444 39 1 0.0391 -9.8202 -2.6539 40 1 1.6331 -10.0610 3.2370 41 1 2.8230 -8.1323 0.1038 42 1 1.7043 -7.6655 1.4111 43 1 2.8064 -3.6630 -0.9434 44 1 2.9326 -3.5605 0.8317 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646610305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:16 Heat of formation + Delta-G solvation = -21.623277 kcal Electronic energy + Delta-G solvation = -27717.211230 eV Core-core repulsion = 23863.076121 eV Total energy + Delta-G solvation = -3854.135109 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.34023 -41.45848 -38.82353 -38.67039 -37.71364 -35.39941 -34.36866 -33.20677 -32.44239 -31.57608 -29.83506 -27.21208 -26.66908 -25.56917 -24.25827 -23.41448 -23.34061 -21.91901 -20.74191 -19.98507 -19.68229 -18.70431 -18.25145 -17.90585 -17.27008 -16.80516 -16.57924 -16.42606 -15.82986 -15.41834 -15.31311 -15.15517 -15.03413 -14.85728 -14.55892 -14.29909 -13.73369 -13.63518 -13.55608 -13.32282 -12.99560 -12.89235 -12.83789 -12.70161 -12.57553 -12.32214 -12.11311 -11.86513 -11.82057 -11.60398 -11.33624 -11.26469 -11.24888 -10.89850 -10.70030 -10.43153 -10.12182 -9.53204 -8.11369 -6.25837 0.53975 0.95420 1.40251 1.42378 1.49405 1.51609 1.61728 1.98018 2.42833 2.69092 3.10594 3.15992 3.21392 3.33727 3.44874 3.80516 3.87002 4.04952 4.10632 4.22718 4.25279 4.34396 4.35566 4.50559 4.58388 4.61352 4.64950 4.80406 4.83044 4.86177 4.93713 4.97326 4.99151 5.11631 5.11992 5.26856 5.47345 5.52820 5.54546 5.61806 5.94452 6.14878 6.34761 6.42424 6.49114 6.84371 7.11861 7.42660 7.51626 8.92000 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.026854 B = 0.002928 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.411794 B = 9561.918156 C = 9806.488807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.950 3.050 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.537 4.537 8 H 0.052 0.948 9 C 0.041 3.959 10 H -0.013 1.013 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.106 3.894 14 N -0.601 5.601 15 C 0.517 3.483 16 O -0.580 6.580 17 C -0.112 4.112 18 H 0.132 0.868 19 C -0.105 4.105 20 C -0.025 4.025 21 C 0.198 3.802 22 N -0.310 5.310 23 N -0.330 5.330 24 C 0.361 3.639 25 O -0.438 6.438 26 N -0.477 5.477 27 C 0.124 3.876 28 C 0.130 3.870 29 H 0.261 0.739 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.431 0.569 41 H 0.092 0.908 42 H 0.128 0.872 43 H 0.055 0.945 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 -16.201 4.874 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.207 1.207 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.071 0.929 9 C 0.022 3.978 10 H 0.005 0.995 11 C -0.145 4.145 12 C -0.167 4.167 13 C -0.016 4.016 14 N -0.332 5.332 15 C 0.305 3.695 16 O -0.460 6.460 17 C -0.133 4.133 18 H 0.150 0.850 19 C -0.144 4.144 20 C -0.064 4.064 21 C -0.070 4.070 22 N -0.150 5.150 23 N -0.180 5.180 24 C 0.055 3.945 25 O -0.241 6.241 26 N -0.181 5.181 27 C 0.001 3.999 28 C 0.007 3.993 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.292 0.708 41 H 0.110 0.890 42 H 0.146 0.854 43 H 0.074 0.926 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.679 -17.553 4.205 18.128 hybrid contribution 0.853 2.888 0.336 3.030 sum -0.825 -14.665 4.541 15.374 Atomic orbital electron populations 1.69991 1.07009 1.27139 1.50988 1.25642 0.95639 1.02124 0.94710 0.85672 0.78945 0.79713 0.78025 1.20725 1.20766 1.19144 1.21459 0.93101 0.91986 1.51014 0.92939 1.18870 0.93186 0.91613 0.94159 0.99455 1.21429 0.98783 0.97108 0.97211 1.21912 0.97854 0.94949 1.01982 1.22087 0.90767 0.99553 0.89145 1.48380 1.42031 1.14966 1.27826 1.20610 0.81389 0.85813 0.81695 1.90700 1.41173 1.82966 1.31135 1.21654 1.01713 0.91242 0.98729 0.85004 1.21536 1.01233 0.96301 0.95284 1.20471 1.01107 0.93877 0.90944 1.25223 0.94166 0.92476 0.95115 1.73945 1.21235 1.12150 1.07699 1.74758 1.12051 1.22823 1.08392 1.21832 0.97054 0.85687 0.89882 1.84896 1.35654 1.87605 1.15928 1.46657 1.38258 1.13527 1.19616 1.21907 0.98153 0.77153 1.02664 1.21577 0.94399 0.82557 1.00719 0.93003 0.94293 0.92253 0.89327 0.93545 0.89265 0.86981 0.88722 0.91183 0.85713 0.86021 0.70751 0.89004 0.85355 0.92636 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.29 11.33 21.45 0.24 -50.04 16 2 C 0.02 0.96 5.31 84.66 0.45 1.41 16 3 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.54 -28.23 8.56 25.60 0.22 -28.01 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 9 C 0.04 1.90 2.25 -11.46 -0.03 1.88 16 10 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 11 C -0.11 -4.37 4.96 30.62 0.15 -4.22 16 12 C -0.13 -3.68 6.08 30.67 0.19 -3.50 16 13 C 0.11 2.23 6.00 86.36 0.52 2.74 16 14 N -0.60 -17.44 2.97 -818.88 -2.43 -19.87 16 15 C 0.52 14.19 6.80 87.66 0.60 14.79 16 16 O -0.58 -21.22 15.63 -3.04 -0.05 -21.27 16 17 C -0.11 -1.89 1.70 -11.39 -0.02 -1.91 16 18 H 0.13 1.63 6.19 -2.38 -0.01 1.62 16 19 C -0.10 -1.71 4.61 30.79 0.14 -1.57 16 20 C -0.02 -0.32 6.34 30.04 0.19 -0.13 16 21 C 0.20 3.90 7.78 137.84 1.07 4.97 16 22 N -0.31 -8.06 12.17 -49.73 -0.61 -8.66 16 23 N -0.33 -8.89 12.24 -173.86 -2.13 -11.02 16 24 C 0.36 7.46 9.30 179.88 1.67 9.13 16 25 O -0.44 -6.39 13.64 -88.36 -1.21 -7.59 16 26 N -0.48 -8.56 3.16 -630.23 -1.99 -10.55 16 27 C 0.12 1.82 6.27 86.54 0.54 2.36 16 28 C 0.13 5.03 5.66 86.36 0.49 5.52 16 29 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 2.88 6.06 -2.39 -0.01 2.86 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 1.44 5.39 -2.39 -0.01 1.43 16 36 H 0.09 1.62 8.11 -2.39 -0.02 1.61 16 37 H 0.07 1.34 8.12 -2.38 -0.02 1.32 16 38 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.43 1.33 9.06 -74.06 -0.67 0.66 16 41 H 0.09 1.55 8.12 -2.39 -0.02 1.53 16 42 H 0.13 1.21 7.82 -2.39 -0.02 1.19 16 43 H 0.06 2.41 7.00 -2.39 -0.02 2.39 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -74.93 350.68 0.41 -74.52 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: 0.37 Total: 6.88 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 6.18 Total: 3.46 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -6.92 Total: -100.15 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.25 Total: -28.86 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -74.93 0.41 -74.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646610305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.901 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds