Wall clock time and date at job start Tue Mar 31 2020 12:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99895 * 2 1 4 4 H 1.48509 * 109.46973 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47269 * 299.99689 * 3 2 1 6 6 H 1.48492 * 109.47647 * 60.00199 * 3 2 1 7 7 C 1.37881 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99827 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99742 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.49747 * 60.06944 * 9 7 2 11 11 C 1.53040 * 109.49780 * 299.99643 * 9 7 2 12 12 C 1.53042 * 109.53565 * 178.64976 * 11 9 7 13 13 C 1.53192 * 109.31101 * 61.37310 * 12 11 9 14 14 N 1.46928 * 108.77293 * 305.36122 * 13 12 11 15 15 C 1.34777 * 120.62870 * 233.58593 * 14 13 12 16 16 O 1.21279 * 120.00176 * 4.35402 * 15 14 13 17 17 C 1.50707 * 119.99929 * 184.34691 * 15 14 13 18 18 H 1.08999 * 109.44447 * 322.14399 * 17 15 14 19 19 C 1.53123 * 109.44483 * 202.20840 * 17 15 14 20 20 C 1.53466 * 109.37644 * 170.19844 * 19 17 15 21 21 C 1.50799 * 108.08882 * 48.87367 * 20 19 17 22 22 N 1.29608 * 128.73787 * 164.13187 * 21 20 19 23 23 N 1.28869 * 109.79735 * 180.10131 * 22 21 20 24 24 C 1.31379 * 109.92633 * 359.97438 * 23 22 21 25 25 O 1.35536 * 126.57661 * 179.90691 * 24 23 22 26 26 N 1.35424 * 106.84784 * 0.16164 * 24 23 22 27 27 C 1.46206 * 129.14166 * 180.61547 * 26 24 23 28 28 C 1.46923 * 118.74012 * 53.85864 * 14 13 12 29 29 H 0.97000 * 120.00024 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.45737 * 58.63842 * 11 9 7 31 31 H 1.08995 * 109.45096 * 298.66705 * 11 9 7 32 32 H 1.08997 * 109.50159 * 301.41836 * 12 11 9 33 33 H 1.09003 * 109.49862 * 181.31853 * 12 11 9 34 34 H 1.09001 * 109.58930 * 185.57397 * 13 12 11 35 35 H 1.09003 * 109.58999 * 65.14587 * 13 12 11 36 36 H 1.08997 * 109.48558 * 50.22804 * 19 17 15 37 37 H 1.09002 * 109.50192 * 290.17885 * 19 17 15 38 38 H 1.08999 * 109.74377 * 289.22332 * 20 19 17 39 39 H 1.09000 * 109.73684 * 168.52158 * 20 19 17 40 40 H 0.96698 * 114.00380 * 90.02031 * 25 24 23 41 41 H 1.09000 * 109.74417 * 42.61609 * 27 26 24 42 42 H 1.08989 * 109.54696 * 282.23810 * 27 26 24 43 43 H 1.09009 * 109.58572 * 65.92904 * 28 14 13 44 44 H 1.09002 * 109.58886 * 186.35244 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6248 -2.5584 -0.8884 11 6 0.3715 -2.5800 1.2515 12 6 -0.4196 -3.8900 1.2367 13 6 0.5558 -5.0711 1.2548 14 7 1.4987 -4.9229 0.1377 15 6 1.6755 -5.9225 -0.7488 16 8 0.9970 -6.9251 -0.6756 17 6 2.7162 -5.7944 -1.8312 18 1 2.7387 -4.7665 -2.1932 19 6 2.3668 -6.7347 -2.9882 20 6 3.2783 -6.4302 -4.1847 21 6 4.7009 -6.3751 -3.6876 22 7 5.8012 -6.4249 -4.3707 23 7 6.8125 -6.3496 -3.5754 24 6 6.3982 -6.2464 -2.3329 25 8 7.1765 -6.1481 -1.2276 26 7 5.0445 -6.2629 -2.3678 27 6 4.0916 -6.1648 -1.2634 28 6 2.2495 -3.6666 0.0090 29 1 -0.4850 0.8400 0.0004 30 1 -0.3207 -1.7380 1.2635 31 1 1.0006 -2.5457 2.1409 32 1 -1.0302 -3.9362 0.3350 33 1 -1.0633 -3.9363 2.1152 34 1 0.0025 -6.0038 1.1447 35 1 1.1039 -5.0780 2.1970 36 1 1.3263 -6.5854 -3.2764 37 1 2.5125 -7.7682 -2.6738 38 1 3.0036 -5.4702 -4.6219 39 1 3.1797 -7.2174 -4.9322 40 1 7.3971 -5.2394 -0.9814 41 1 4.4174 -5.3956 -0.5631 42 1 4.0286 -7.1240 -0.7497 43 1 2.9329 -3.5613 0.8517 44 1 2.8141 -3.6722 -0.9234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646610306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:19 Heat of formation + Delta-G solvation = 0.158457 kcal Electronic energy + Delta-G solvation = -28022.907273 eV Core-core repulsion = 24169.716692 eV Total energy + Delta-G solvation = -3853.190582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.37866 -40.27205 -37.91783 -37.48380 -36.59420 -33.59769 -33.44678 -32.23934 -30.89015 -30.20700 -28.87314 -25.72874 -25.21891 -24.52604 -23.36645 -22.47765 -21.80163 -20.63313 -19.62441 -19.11109 -18.47150 -17.45221 -17.04493 -16.33953 -16.27124 -15.66709 -15.57052 -14.87115 -14.69038 -14.52600 -14.48713 -13.91134 -13.82168 -13.43532 -13.02360 -12.95376 -12.74573 -12.50111 -12.36962 -12.07631 -11.99343 -11.82783 -11.40886 -11.25816 -11.14616 -11.05307 -10.88478 -10.46938 -10.37463 -10.32854 -10.14094 -9.96505 -9.87988 -9.45813 -9.15234 -9.04548 -8.58246 -8.18161 -6.20627 -4.30056 1.42043 1.90093 2.55124 2.64853 3.13335 3.15576 3.25349 3.26981 3.54958 3.97296 4.16524 4.23480 4.26592 4.36125 4.77586 4.81185 4.90892 5.03512 5.09403 5.18520 5.31739 5.45534 5.46954 5.55803 5.63897 5.64876 5.73230 5.77290 5.85293 5.90920 5.98606 6.11846 6.27416 6.31914 6.36116 6.57905 6.71467 6.96832 7.11132 7.13411 7.48532 7.64215 7.69759 7.86905 8.13557 8.27760 8.49437 8.73250 9.36758 10.84430 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011982 B = 0.004242 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.291843 B = 6599.440357 C = 7907.830395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.032 0.968 11 C -0.113 4.113 12 C -0.134 4.134 13 C 0.114 3.886 14 N -0.597 5.597 15 C 0.521 3.479 16 O -0.549 6.549 17 C -0.127 4.127 18 H 0.115 0.885 19 C -0.106 4.106 20 C -0.034 4.034 21 C 0.195 3.805 22 N -0.277 5.277 23 N -0.289 5.289 24 C 0.352 3.648 25 O -0.437 6.437 26 N -0.479 5.479 27 C 0.121 3.879 28 C 0.105 3.895 29 H 0.262 0.738 30 H 0.096 0.904 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.408 0.592 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.062 0.938 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.542 -9.863 -1.025 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.050 0.950 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.009 4.009 14 N -0.328 5.328 15 C 0.307 3.693 16 O -0.428 6.428 17 C -0.148 4.148 18 H 0.132 0.868 19 C -0.144 4.144 20 C -0.074 4.074 21 C -0.072 4.072 22 N -0.119 5.119 23 N -0.140 5.140 24 C 0.048 3.952 25 O -0.236 6.236 26 N -0.182 5.182 27 C -0.002 4.002 28 C -0.016 4.016 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.265 0.735 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.058 -10.942 -1.954 12.212 hybrid contribution -0.224 1.807 1.520 2.372 sum 4.834 -9.135 -0.434 10.344 Atomic orbital electron populations 1.69871 1.05932 1.26678 1.49734 1.24928 0.94835 0.99167 0.94644 0.86544 0.80063 0.83667 0.77774 1.19780 1.20901 1.20907 1.21039 0.92842 0.90195 1.51947 0.92504 1.19053 0.92718 0.90791 0.95253 0.95038 1.21641 0.99483 0.95662 0.98330 1.21998 0.97730 0.96328 1.01190 1.21643 0.91350 0.99922 0.87936 1.48355 1.41754 1.15744 1.26993 1.19936 0.84072 0.83178 0.82068 1.90670 1.48051 1.30548 1.73514 1.21722 0.92705 1.03830 0.96566 0.86753 1.21552 1.00887 0.99742 0.92236 1.20356 0.83466 1.05234 0.98294 1.24696 0.98987 1.03836 0.79649 1.74013 0.94248 1.18708 1.24896 1.74837 1.21960 1.20897 0.96312 1.21797 0.79050 1.05267 0.89108 1.84896 1.65505 1.33827 1.39413 1.46596 1.07097 1.55095 1.09377 1.21822 0.86548 1.04567 0.87254 1.22368 0.95528 0.83074 1.00626 0.92788 0.88525 0.94518 0.92338 0.92359 0.90049 0.92011 0.88693 0.90093 0.87883 0.87449 0.73464 0.87933 0.88536 0.91985 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.05 11.31 55.43 0.63 -22.42 16 2 C 0.07 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -12.45 8.57 -34.44 -0.29 -12.74 16 8 H 0.06 1.32 7.74 -52.48 -0.41 0.92 16 9 C 0.04 0.86 2.26 -91.43 -0.21 0.66 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.31 4.96 -26.69 -0.13 -2.44 16 12 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 13 C 0.11 1.74 6.44 -3.71 -0.02 1.72 16 14 N -0.60 -9.24 2.97 -172.49 -0.51 -9.75 16 15 C 0.52 7.65 6.80 -10.98 -0.07 7.57 16 16 O -0.55 -9.42 15.63 5.56 0.09 -9.33 16 17 C -0.13 -1.47 1.70 -91.53 -0.16 -1.62 16 18 H 0.11 1.35 6.20 -51.93 -0.32 1.03 16 19 C -0.11 -1.08 4.61 -26.43 -0.12 -1.20 16 20 C -0.03 -0.32 6.34 -27.59 -0.17 -0.49 16 21 C 0.20 2.47 7.78 -154.44 -1.20 1.27 16 22 N -0.28 -4.23 12.17 32.93 0.40 -3.83 16 23 N -0.29 -4.54 12.24 29.53 0.36 -4.17 16 24 C 0.35 4.64 9.30 -89.29 -0.83 3.81 16 25 O -0.44 -4.51 13.64 -18.30 -0.25 -4.76 16 26 N -0.48 -5.81 3.16 -115.38 -0.37 -6.17 16 27 C 0.12 1.29 6.26 -4.03 -0.03 1.27 16 28 C 0.11 1.73 5.24 -3.49 -0.02 1.71 16 29 H 0.26 6.57 8.31 -40.82 -0.34 6.24 16 30 H 0.10 2.29 6.04 -51.93 -0.31 1.98 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.25 7.00 -51.93 -0.36 0.89 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 37 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.41 2.15 9.06 45.56 0.41 2.56 16 41 H 0.10 0.98 7.77 -51.93 -0.40 0.58 16 42 H 0.10 1.02 8.12 -51.93 -0.42 0.60 16 43 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 44 H 0.07 1.03 5.34 -51.93 -0.28 0.76 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -30.69 350.57 -8.36 -39.05 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.45 Total: 2.99 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.52 Total: -1.36 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.51 Total: -46.35 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.16 Total: -14.09 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.69 -8.36 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646610306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.207 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds