Wall clock time and date at job start Tue Mar 31 2020 12:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99895 * 2 1 4 4 H 1.48509 * 109.46973 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47269 * 299.99689 * 3 2 1 6 6 H 1.48492 * 109.47647 * 60.00199 * 3 2 1 7 7 C 1.37881 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99827 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99742 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.49747 * 60.06944 * 9 7 2 11 11 C 1.53040 * 109.49780 * 299.99643 * 9 7 2 12 12 C 1.53042 * 109.53565 * 178.64976 * 11 9 7 13 13 C 1.53192 * 109.31101 * 61.37310 * 12 11 9 14 14 N 1.46928 * 108.77293 * 305.36122 * 13 12 11 15 15 C 1.34777 * 120.62870 * 233.58593 * 14 13 12 16 16 O 1.21279 * 120.00176 * 4.35402 * 15 14 13 17 17 C 1.50707 * 119.99929 * 184.34691 * 15 14 13 18 18 H 1.08999 * 109.44447 * 322.14399 * 17 15 14 19 19 C 1.53123 * 109.44483 * 202.20840 * 17 15 14 20 20 C 1.53466 * 109.37644 * 170.19844 * 19 17 15 21 21 C 1.50799 * 108.08882 * 48.87367 * 20 19 17 22 22 N 1.29608 * 128.73787 * 164.13187 * 21 20 19 23 23 N 1.28869 * 109.79735 * 180.10131 * 22 21 20 24 24 C 1.31379 * 109.92633 * 359.97438 * 23 22 21 25 25 O 1.35536 * 126.57661 * 179.90691 * 24 23 22 26 26 N 1.35424 * 106.84784 * 0.16164 * 24 23 22 27 27 C 1.46206 * 129.14166 * 180.61547 * 26 24 23 28 28 C 1.46923 * 118.74012 * 53.85864 * 14 13 12 29 29 H 0.97000 * 120.00024 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.45737 * 58.63842 * 11 9 7 31 31 H 1.08995 * 109.45096 * 298.66705 * 11 9 7 32 32 H 1.08997 * 109.50159 * 301.41836 * 12 11 9 33 33 H 1.09003 * 109.49862 * 181.31853 * 12 11 9 34 34 H 1.09001 * 109.58930 * 185.57397 * 13 12 11 35 35 H 1.09003 * 109.58999 * 65.14587 * 13 12 11 36 36 H 1.08997 * 109.48558 * 50.22804 * 19 17 15 37 37 H 1.09002 * 109.50192 * 290.17885 * 19 17 15 38 38 H 1.08999 * 109.74377 * 289.22332 * 20 19 17 39 39 H 1.09000 * 109.73684 * 168.52158 * 20 19 17 40 40 H 0.96698 * 114.00380 * 90.02031 * 25 24 23 41 41 H 1.09000 * 109.74417 * 42.61609 * 27 26 24 42 42 H 1.08989 * 109.54696 * 282.23810 * 27 26 24 43 43 H 1.09009 * 109.58572 * 65.92904 * 28 14 13 44 44 H 1.09002 * 109.58886 * 186.35244 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6248 -2.5584 -0.8884 11 6 0.3715 -2.5800 1.2515 12 6 -0.4196 -3.8900 1.2367 13 6 0.5558 -5.0711 1.2548 14 7 1.4987 -4.9229 0.1377 15 6 1.6755 -5.9225 -0.7488 16 8 0.9970 -6.9251 -0.6756 17 6 2.7162 -5.7944 -1.8312 18 1 2.7387 -4.7665 -2.1932 19 6 2.3668 -6.7347 -2.9882 20 6 3.2783 -6.4302 -4.1847 21 6 4.7009 -6.3751 -3.6876 22 7 5.8012 -6.4249 -4.3707 23 7 6.8125 -6.3496 -3.5754 24 6 6.3982 -6.2464 -2.3329 25 8 7.1765 -6.1481 -1.2276 26 7 5.0445 -6.2629 -2.3678 27 6 4.0916 -6.1648 -1.2634 28 6 2.2495 -3.6666 0.0090 29 1 -0.4850 0.8400 0.0004 30 1 -0.3207 -1.7380 1.2635 31 1 1.0006 -2.5457 2.1409 32 1 -1.0302 -3.9362 0.3350 33 1 -1.0633 -3.9363 2.1152 34 1 0.0025 -6.0038 1.1447 35 1 1.1039 -5.0780 2.1970 36 1 1.3263 -6.5854 -3.2764 37 1 2.5125 -7.7682 -2.6738 38 1 3.0036 -5.4702 -4.6219 39 1 3.1797 -7.2174 -4.9322 40 1 7.3971 -5.2394 -0.9814 41 1 4.4174 -5.3956 -0.5631 42 1 4.0286 -7.1240 -0.7497 43 1 2.9329 -3.5613 0.8517 44 1 2.8141 -3.6722 -0.9234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646610306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:18 Heat of formation + Delta-G solvation = -20.974382 kcal Electronic energy + Delta-G solvation = -28023.823662 eV Core-core repulsion = 24169.716692 eV Total energy + Delta-G solvation = -3854.106970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.34634 -41.46408 -38.81578 -38.66747 -37.73554 -35.21804 -34.36949 -33.56342 -32.17773 -31.60651 -29.83026 -27.10465 -26.69174 -25.60684 -24.42158 -23.42483 -23.20651 -21.89807 -20.78804 -19.98979 -19.67419 -18.71480 -18.19270 -17.87255 -17.26939 -16.91992 -16.51242 -16.44301 -15.84447 -15.44452 -15.33624 -15.17107 -15.02734 -14.80533 -14.51908 -14.33484 -13.74596 -13.63711 -13.57143 -13.26755 -12.98339 -12.89783 -12.83332 -12.72055 -12.55168 -12.29956 -12.10774 -11.89537 -11.81512 -11.59161 -11.38009 -11.29103 -11.25533 -10.83860 -10.70657 -10.41908 -10.13089 -9.53394 -8.08483 -6.22928 0.51714 0.96799 1.41730 1.45826 1.48090 1.54283 1.60088 1.98401 2.44273 2.68095 3.10299 3.20268 3.21130 3.35377 3.45968 3.82296 3.90185 4.06337 4.14094 4.21718 4.24318 4.30081 4.34553 4.51432 4.53697 4.57826 4.62296 4.80031 4.82524 4.84838 4.95141 4.96092 4.97236 5.10136 5.10365 5.26857 5.42984 5.51372 5.60468 5.64577 5.94345 6.10428 6.33105 6.39060 6.44363 6.89486 7.07810 7.46618 7.50020 8.95141 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.011982 B = 0.004242 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.291843 B = 6599.440357 C = 7907.830395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.018 3.982 3 Si 0.946 3.054 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.527 4.527 8 H 0.064 0.936 9 C 0.037 3.963 10 H -0.004 1.004 11 C -0.108 4.108 12 C -0.125 4.125 13 C 0.116 3.884 14 N -0.601 5.601 15 C 0.525 3.475 16 O -0.572 6.572 17 C -0.120 4.120 18 H 0.116 0.884 19 C -0.100 4.100 20 C -0.028 4.028 21 C 0.198 3.802 22 N -0.310 5.310 23 N -0.329 5.329 24 C 0.359 3.641 25 O -0.437 6.437 26 N -0.478 5.478 27 C 0.125 3.875 28 C 0.120 3.880 29 H 0.259 0.741 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.430 0.570 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.075 0.925 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -10.509 -0.508 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.212 1.212 7 C -0.566 4.566 8 H 0.082 0.918 9 C 0.018 3.982 10 H 0.014 0.986 11 C -0.146 4.146 12 C -0.163 4.163 13 C -0.006 4.006 14 N -0.332 5.332 15 C 0.313 3.687 16 O -0.452 6.452 17 C -0.142 4.142 18 H 0.134 0.866 19 C -0.139 4.139 20 C -0.067 4.067 21 C -0.070 4.070 22 N -0.151 5.151 23 N -0.179 5.179 24 C 0.053 3.947 25 O -0.240 6.240 26 N -0.181 5.181 27 C 0.003 3.997 28 C -0.002 4.002 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.135 0.865 39 H 0.145 0.855 40 H 0.291 0.709 41 H 0.136 0.864 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.138 -11.580 -1.432 13.184 hybrid contribution -0.586 2.007 1.399 2.516 sum 5.551 -9.573 -0.033 11.066 Atomic orbital electron populations 1.70018 1.07206 1.26940 1.51249 1.25626 0.95425 1.02107 0.94943 0.85686 0.79471 0.80378 0.77169 1.18680 1.21412 1.21187 1.21463 0.93358 0.91315 1.50415 0.91824 1.18990 0.93276 0.92010 0.93941 0.98616 1.21461 0.98965 0.96112 0.98051 1.21872 0.97842 0.95405 1.01193 1.21634 0.91227 0.98817 0.88902 1.48364 1.41821 1.15620 1.27350 1.20332 0.84106 0.82396 0.81915 1.90666 1.49108 1.31413 1.74023 1.21674 0.92306 1.04298 0.95886 0.86641 1.21517 1.01160 0.99176 0.92008 1.20495 0.81281 1.06723 0.98197 1.25243 0.99577 1.02429 0.79766 1.73930 0.95002 1.20329 1.25796 1.74739 1.22839 1.22794 0.97547 1.21843 0.79582 1.04038 0.89195 1.84866 1.65015 1.35964 1.38164 1.46650 1.06936 1.54961 1.09537 1.21876 0.85598 1.05372 0.86895 1.22105 0.94274 0.81602 1.02187 0.93209 0.92258 0.94248 0.94208 0.90474 0.89776 0.90015 0.88488 0.90388 0.86517 0.85544 0.70858 0.86381 0.88120 0.90645 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.73 11.31 21.45 0.24 -48.49 16 2 C 0.02 0.91 5.30 84.66 0.45 1.36 16 3 Si 0.95 39.79 29.54 68.60 2.03 41.81 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.53 -24.79 8.57 25.60 0.22 -24.57 16 8 H 0.06 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.04 1.55 2.26 -11.32 -0.03 1.52 16 10 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 11 C -0.11 -4.39 4.96 30.62 0.15 -4.23 16 12 C -0.12 -4.15 6.08 30.67 0.19 -3.96 16 13 C 0.12 3.32 6.44 86.36 0.56 3.88 16 14 N -0.60 -17.28 2.97 -818.04 -2.43 -19.71 16 15 C 0.52 14.24 6.80 87.66 0.60 14.83 16 16 O -0.57 -18.52 15.63 -3.03 -0.05 -18.56 16 17 C -0.12 -2.49 1.70 -11.38 -0.02 -2.50 16 18 H 0.12 2.41 6.20 -2.39 -0.01 2.40 16 19 C -0.10 -1.82 4.61 30.79 0.14 -1.68 16 20 C -0.03 -0.45 6.34 30.04 0.19 -0.26 16 21 C 0.20 4.66 7.78 137.83 1.07 5.73 16 22 N -0.31 -9.18 12.17 -49.73 -0.61 -9.79 16 23 N -0.33 -10.05 12.24 -173.86 -2.13 -12.18 16 24 C 0.36 8.84 9.30 179.88 1.67 10.51 16 25 O -0.44 -8.01 13.64 -88.40 -1.21 -9.22 16 26 N -0.48 -10.54 3.16 -630.22 -1.99 -12.54 16 27 C 0.13 2.31 6.26 86.55 0.54 2.85 16 28 C 0.12 3.68 5.24 86.51 0.45 4.13 16 29 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 30 H 0.06 2.88 6.04 -2.39 -0.01 2.87 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.08 2.41 7.00 -2.39 -0.02 2.39 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.10 1.76 8.11 -2.39 -0.02 1.74 16 37 H 0.08 1.49 8.12 -2.39 -0.02 1.47 16 38 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.43 3.39 9.06 -74.06 -0.67 2.72 16 41 H 0.12 1.83 7.77 -2.39 -0.02 1.81 16 42 H 0.10 1.83 8.12 -2.39 -0.02 1.81 16 43 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 44 H 0.09 2.35 5.34 -2.39 -0.01 2.34 16 Total: -1.00 -66.85 350.57 0.41 -66.44 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.37 Total: 14.62 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.19 Total: 7.61 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -6.91 Total: -102.70 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -1.25 Total: -27.78 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.81 kcal Total: -66.85 0.41 -66.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646610306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.465 kcal (2) G-P(sol) polarization free energy of solvation -66.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds